Wall clock time and date at job start Tue Mar 31 2020 14:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00092 * 2 1 4 4 O 1.20826 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99640 * 180.02562 * 3 2 1 6 6 C 1.54415 * 129.01020 * 180.02562 * 5 3 2 7 7 C 1.54412 * 78.89139 * 180.64100 * 6 5 3 8 8 C 1.50707 * 129.01219 * 180.64195 * 7 6 5 9 9 O 1.20827 * 120.00012 * 0.02562 * 8 7 6 10 10 O 1.34225 * 119.99890 * 180.27488 * 8 7 6 11 11 C 1.45197 * 117.00245 * 179.72673 * 10 8 7 12 12 C 1.53040 * 109.46012 * 270.02790 * 11 10 8 13 13 C 1.53198 * 109.31086 * 178.59648 * 12 11 10 14 14 N 1.46928 * 108.76572 * 54.65721 * 13 12 11 15 15 C 1.36935 * 120.63098 * 126.35676 * 14 13 12 16 16 H 1.08004 * 120.00071 * 331.86100 * 15 14 13 17 17 C 1.38816 * 119.99827 * 151.85892 * 15 14 13 18 18 N 1.31611 * 120.00109 * 343.07497 * 17 15 14 19 19 Si 1.86798 * 119.99889 * 163.07458 * 17 15 14 20 20 H 1.48501 * 109.47024 * 60.00060 * 19 17 15 21 21 H 1.48498 * 109.47108 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47321 * 300.00078 * 19 17 15 23 23 C 1.46922 * 118.73721 * 306.38182 * 14 13 12 24 24 C 1.53042 * 109.46624 * 149.97249 * 11 10 8 25 25 C 1.54890 * 84.49540 * 43.15330 * 7 6 5 26 26 C 1.54886 * 84.49664 * 318.13083 * 7 6 5 27 27 H 1.09001 * 109.47110 * 300.00487 * 1 2 3 28 28 H 1.08999 * 109.47028 * 60.00026 * 1 2 3 29 29 H 1.09001 * 109.47963 * 179.97438 * 1 2 3 30 30 H 1.09000 * 114.93386 * 68.15364 * 6 5 3 31 31 H 1.08998 * 114.98906 * 293.12392 * 6 5 3 32 32 H 1.09007 * 109.45782 * 30.00236 * 11 10 8 33 33 H 1.08995 * 109.49451 * 298.56394 * 12 11 10 34 34 H 1.08999 * 109.49600 * 58.66195 * 12 11 10 35 35 H 1.08998 * 109.59718 * 294.87008 * 13 12 11 36 36 H 1.09005 * 109.70110 * 174.50554 * 13 12 11 37 37 H 0.97003 * 120.00177 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.58831 * 293.82044 * 23 14 13 39 39 H 1.09004 * 109.70471 * 173.46357 * 23 14 13 40 40 H 1.09008 * 109.49155 * 301.34122 * 24 11 10 41 41 H 1.09000 * 109.49554 * 61.42859 * 24 11 10 42 42 H 1.09004 * 114.97435 * 69.39295 * 25 7 6 43 43 H 1.08998 * 114.97534 * 204.56275 * 25 7 6 44 44 H 1.08996 * 114.97785 * 155.42942 * 26 7 6 45 45 H 1.08999 * 114.97834 * 290.61398 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.4743 2.5237 -0.0002 7 6 5.5249 1.3922 -0.0183 8 6 7.0285 1.4937 -0.0187 9 8 7.5608 2.5782 -0.0028 10 8 7.7763 0.3793 -0.0417 11 6 9.2179 0.5527 -0.0468 12 6 9.7160 0.6389 -1.4913 13 6 11.2324 0.8569 -1.4921 14 7 11.8633 -0.2068 -0.6989 15 6 12.8678 -0.9709 -1.2303 16 1 12.9122 -1.1392 -2.2962 17 6 13.8291 -1.5291 -0.3988 18 7 13.9850 -1.0731 0.8259 19 14 14.9015 -2.9276 -1.0183 20 1 15.6724 -2.4727 -2.2032 21 1 15.8416 -3.3427 0.0537 22 1 14.0435 -4.0786 -1.3980 23 6 11.3956 -0.4355 0.6749 24 6 9.8774 -0.6387 0.6515 25 6 4.5896 0.7434 -1.0687 26 6 4.5922 0.7124 1.0147 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 4.4474 3.1110 0.9177 31 1 4.4308 3.1249 -0.9083 32 1 9.4750 1.4710 0.4814 33 1 9.4813 -0.2890 -2.0129 34 1 9.2284 1.4734 -1.9951 35 1 11.4625 1.8268 -1.0513 36 1 11.6081 0.8219 -2.5148 37 1 14.6565 -1.4634 1.4070 38 1 11.6390 0.4290 1.2925 39 1 11.8769 -1.3239 1.0839 40 1 9.5045 -0.7136 1.6731 41 1 9.6411 -1.5544 0.1095 42 1 4.5513 1.2560 -2.0299 43 1 4.6706 -0.3406 -1.1499 44 1 4.6733 -0.3734 1.0634 45 1 4.5563 1.1962 1.9908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842738524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:25 Heat of formation + Delta-G solvation = -45.219783 kcal Electronic energy + Delta-G solvation = -27291.256035 eV Core-core repulsion = 23278.774814 eV Total energy + Delta-G solvation = -4012.481222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.71371 -40.51898 -39.94448 -37.42777 -36.86207 -35.85902 -32.72900 -30.43247 -29.71583 -28.93806 -26.97800 -26.33354 -26.18550 -25.20628 -23.76431 -22.31144 -21.87226 -20.46220 -19.44068 -18.96041 -17.93256 -17.57540 -17.13315 -16.78573 -16.71772 -15.78173 -15.43197 -14.86977 -14.75679 -14.73389 -14.19340 -13.77949 -13.67948 -13.60826 -13.20016 -13.06756 -12.80986 -12.62804 -12.52996 -12.02968 -11.92067 -11.67596 -11.56409 -11.27275 -11.26241 -11.17320 -11.10088 -10.85769 -10.79883 -10.76433 -10.74926 -10.46360 -10.26949 -10.21504 -9.92187 -9.69606 -9.49037 -8.51719 -6.75873 -5.84270 -3.27078 1.57079 2.05116 2.06719 2.69346 3.36759 3.42505 3.43731 3.55937 3.72058 3.78921 3.91483 4.03796 4.35742 4.45935 4.66757 4.74881 4.80621 5.06912 5.09365 5.15123 5.21414 5.28846 5.33638 5.36814 5.38522 5.45242 5.48332 5.49777 5.55787 5.69063 5.87748 5.96264 6.19137 6.30086 6.37541 6.46754 6.54633 6.69335 6.78729 6.91512 7.25031 7.28951 7.54799 7.75100 7.88027 8.39193 9.15090 9.77749 10.34327 11.24982 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.030653 B = 0.002234 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.234791 B =12527.906963 C =12876.068985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.530 3.470 4 O -0.496 6.496 5 C -0.153 4.153 6 C -0.059 4.059 7 C -0.139 4.139 8 C 0.522 3.478 9 O -0.497 6.497 10 O -0.348 6.348 11 C 0.098 3.902 12 C -0.146 4.146 13 C 0.149 3.851 14 N -0.592 5.592 15 C -0.255 4.255 16 H 0.067 0.933 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.905 3.095 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.174 3.826 24 C -0.135 4.135 25 C -0.069 4.069 26 C -0.069 4.069 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.061 0.939 37 H 0.256 0.744 38 H 0.022 0.978 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.699 1.607 -0.464 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.266 6.266 3 C 0.373 3.627 4 O -0.382 6.382 5 C -0.154 4.154 6 C -0.096 4.096 7 C -0.140 4.140 8 C 0.363 3.637 9 O -0.384 6.384 10 O -0.265 6.265 11 C 0.045 3.955 12 C -0.186 4.186 13 C 0.022 3.978 14 N -0.315 5.315 15 C -0.385 4.385 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.735 3.265 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.047 3.953 24 C -0.174 4.174 25 C -0.106 4.106 26 C -0.106 4.106 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.571 2.157 -0.339 24.668 hybrid contribution 0.373 -0.501 -0.241 0.669 sum -24.198 1.657 -0.580 24.262 Atomic orbital electron populations 1.23350 0.75631 1.04091 1.02774 1.86498 1.23727 1.32651 1.83753 1.21235 0.87996 0.81419 0.72096 1.90698 1.66202 1.36522 1.44818 1.23594 0.87276 1.01866 1.02695 1.23751 0.87894 0.93661 1.04344 1.23132 0.88569 1.00871 1.01468 1.21055 0.87013 0.82899 0.72687 1.90683 1.73575 1.29173 1.44983 1.86534 1.22502 1.34862 1.82555 1.23042 0.73028 1.01088 0.98371 1.22477 0.99724 1.01621 0.94760 1.20866 0.88905 0.91628 0.96413 1.44111 1.39856 1.35886 1.11638 1.19148 1.02428 1.24178 0.92715 0.91549 1.25072 0.97018 1.00559 0.96930 1.70003 1.35366 1.41461 1.07912 0.86333 0.79926 0.82501 0.77787 1.20835 1.21606 1.20944 1.20818 0.86491 1.01641 0.86301 1.22475 0.99691 0.96414 0.98856 1.24517 0.88466 1.01997 0.95649 1.24048 0.88596 1.01786 0.96192 0.91653 0.91660 0.87688 0.89040 0.88986 0.90182 0.91254 0.92629 0.96002 0.92022 0.93436 0.95947 0.88491 0.92312 0.91368 0.89101 0.88140 0.88103 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.97 10.56 -39.24 -0.41 -3.38 16 3 C 0.53 5.23 8.07 36.01 0.29 5.52 16 4 O -0.50 -6.08 16.84 -18.75 -0.32 -6.40 16 5 C -0.15 -1.36 3.61 -171.00 -0.62 -1.98 16 6 C -0.06 -0.57 7.77 -26.71 -0.21 -0.77 16 7 C -0.14 -1.49 3.47 -172.27 -0.60 -2.09 16 8 C 0.52 7.71 8.04 36.01 0.29 8.00 16 9 O -0.50 -8.74 16.31 -18.75 -0.31 -9.04 16 10 O -0.35 -5.55 9.88 -39.25 -0.39 -5.94 16 11 C 0.10 1.77 2.42 -26.69 -0.06 1.70 16 12 C -0.15 -2.66 5.72 -26.61 -0.15 -2.81 16 13 C 0.15 3.14 6.52 -3.71 -0.02 3.11 16 14 N -0.59 -14.66 2.99 -172.31 -0.52 -15.18 16 15 C -0.26 -6.88 9.58 -15.06 -0.14 -7.03 16 16 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 17 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 18 N -0.90 -25.74 11.19 55.49 0.62 -25.12 16 19 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 24 C -0.13 -2.56 5.74 -26.61 -0.15 -2.71 16 25 C -0.07 -0.59 7.95 -24.71 -0.20 -0.78 16 26 C -0.07 -0.59 7.84 -25.98 -0.20 -0.79 16 27 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 28 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.84 7.94 -51.93 -0.41 0.42 16 31 H 0.09 0.84 7.91 -51.93 -0.41 0.43 16 32 H 0.08 1.54 7.16 -51.93 -0.37 1.16 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 1.26 7.93 -51.93 -0.41 0.84 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 2.50 6.06 -51.93 -0.31 2.19 16 40 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.09 0.70 7.91 -51.93 -0.41 0.29 16 43 H 0.10 0.76 7.97 -51.93 -0.41 0.34 16 44 H 0.10 0.76 7.97 -51.93 -0.41 0.34 16 45 H 0.09 0.69 7.93 -51.93 -0.41 0.28 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -31.82 374.42 -8.45 -40.26 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.92 Total: -1.78 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.82 Total: 4.65 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.11 Total: -40.30 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.42 Total: -24.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.82 -8.45 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842738524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.956 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds