Wall clock time and date at job start Tue Mar 31 2020 14:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00092 * 2 1 4 4 O 1.20826 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99640 * 180.02562 * 3 2 1 6 6 C 1.54415 * 129.01020 * 180.02562 * 5 3 2 7 7 C 1.54412 * 78.89139 * 180.64100 * 6 5 3 8 8 C 1.50707 * 129.01219 * 180.64195 * 7 6 5 9 9 O 1.20827 * 120.00012 * 0.02562 * 8 7 6 10 10 O 1.34225 * 119.99890 * 180.27488 * 8 7 6 11 11 C 1.45197 * 117.00245 * 179.72673 * 10 8 7 12 12 C 1.53040 * 109.46012 * 270.02790 * 11 10 8 13 13 C 1.53198 * 109.31086 * 178.59648 * 12 11 10 14 14 N 1.46928 * 108.76572 * 54.65721 * 13 12 11 15 15 C 1.36935 * 120.63098 * 126.35676 * 14 13 12 16 16 H 1.08004 * 120.00071 * 331.86100 * 15 14 13 17 17 C 1.38816 * 119.99827 * 151.85892 * 15 14 13 18 18 N 1.31611 * 120.00109 * 343.07497 * 17 15 14 19 19 Si 1.86798 * 119.99889 * 163.07458 * 17 15 14 20 20 H 1.48501 * 109.47024 * 60.00060 * 19 17 15 21 21 H 1.48498 * 109.47108 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47321 * 300.00078 * 19 17 15 23 23 C 1.46922 * 118.73721 * 306.38182 * 14 13 12 24 24 C 1.53042 * 109.46624 * 149.97249 * 11 10 8 25 25 C 1.54890 * 84.49540 * 43.15330 * 7 6 5 26 26 C 1.54886 * 84.49664 * 318.13083 * 7 6 5 27 27 H 1.09001 * 109.47110 * 300.00487 * 1 2 3 28 28 H 1.08999 * 109.47028 * 60.00026 * 1 2 3 29 29 H 1.09001 * 109.47963 * 179.97438 * 1 2 3 30 30 H 1.09000 * 114.93386 * 68.15364 * 6 5 3 31 31 H 1.08998 * 114.98906 * 293.12392 * 6 5 3 32 32 H 1.09007 * 109.45782 * 30.00236 * 11 10 8 33 33 H 1.08995 * 109.49451 * 298.56394 * 12 11 10 34 34 H 1.08999 * 109.49600 * 58.66195 * 12 11 10 35 35 H 1.08998 * 109.59718 * 294.87008 * 13 12 11 36 36 H 1.09005 * 109.70110 * 174.50554 * 13 12 11 37 37 H 0.97003 * 120.00177 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.58831 * 293.82044 * 23 14 13 39 39 H 1.09004 * 109.70471 * 173.46357 * 23 14 13 40 40 H 1.09008 * 109.49155 * 301.34122 * 24 11 10 41 41 H 1.09000 * 109.49554 * 61.42859 * 24 11 10 42 42 H 1.09004 * 114.97435 * 69.39295 * 25 7 6 43 43 H 1.08998 * 114.97534 * 204.56275 * 25 7 6 44 44 H 1.08996 * 114.97785 * 155.42942 * 26 7 6 45 45 H 1.08999 * 114.97834 * 290.61398 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.4743 2.5237 -0.0002 7 6 5.5249 1.3922 -0.0183 8 6 7.0285 1.4937 -0.0187 9 8 7.5608 2.5782 -0.0028 10 8 7.7763 0.3793 -0.0417 11 6 9.2179 0.5527 -0.0468 12 6 9.7160 0.6389 -1.4913 13 6 11.2324 0.8569 -1.4921 14 7 11.8633 -0.2068 -0.6989 15 6 12.8678 -0.9709 -1.2303 16 1 12.9122 -1.1392 -2.2962 17 6 13.8291 -1.5291 -0.3988 18 7 13.9850 -1.0731 0.8259 19 14 14.9015 -2.9276 -1.0183 20 1 15.6724 -2.4727 -2.2032 21 1 15.8416 -3.3427 0.0537 22 1 14.0435 -4.0786 -1.3980 23 6 11.3956 -0.4355 0.6749 24 6 9.8774 -0.6387 0.6515 25 6 4.5896 0.7434 -1.0687 26 6 4.5922 0.7124 1.0147 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 4.4474 3.1110 0.9177 31 1 4.4308 3.1249 -0.9083 32 1 9.4750 1.4710 0.4814 33 1 9.4813 -0.2890 -2.0129 34 1 9.2284 1.4734 -1.9951 35 1 11.4625 1.8268 -1.0513 36 1 11.6081 0.8219 -2.5148 37 1 14.6565 -1.4634 1.4070 38 1 11.6390 0.4290 1.2925 39 1 11.8769 -1.3239 1.0839 40 1 9.5045 -0.7136 1.6731 41 1 9.6411 -1.5544 0.1095 42 1 4.5513 1.2560 -2.0299 43 1 4.6706 -0.3406 -1.1499 44 1 4.6733 -0.3734 1.0634 45 1 4.5563 1.1962 1.9908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842738524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:24 Heat of formation + Delta-G solvation = -61.549686 kcal Electronic energy + Delta-G solvation = -27291.964153 eV Core-core repulsion = 23278.774814 eV Total energy + Delta-G solvation = -4013.189339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.47444 -41.49496 -40.96097 -39.01702 -37.58092 -37.32040 -34.58933 -32.17228 -31.48382 -29.56270 -27.96776 -26.99463 -26.88925 -26.82465 -24.90382 -23.95802 -23.42108 -21.42298 -21.03352 -19.97505 -18.86733 -18.69714 -18.43239 -18.00228 -17.45088 -17.09042 -16.81774 -16.38578 -15.66406 -15.47453 -15.40823 -15.39086 -14.96626 -14.77618 -14.57043 -14.32733 -14.23889 -13.95211 -13.30262 -13.19120 -13.04884 -12.81369 -12.75618 -12.58810 -12.57194 -12.49824 -12.31943 -12.19413 -12.05191 -11.98731 -11.85300 -11.83447 -11.56259 -11.48640 -11.45733 -11.28508 -11.07109 -10.54853 -8.75305 -7.89699 -5.35699 0.81865 0.96757 1.26947 1.49808 1.51793 1.58826 1.68029 2.51679 2.85091 2.94508 3.09078 3.17444 3.26482 3.27113 3.49407 3.62200 3.78821 3.83978 3.87540 4.15385 4.30288 4.34601 4.37058 4.44538 4.47522 4.57061 4.59630 4.73137 4.74264 4.75582 4.77146 4.83064 4.83476 4.85048 4.89313 4.96628 5.04891 5.22383 5.23389 5.39095 5.46216 5.63073 5.68843 6.36904 6.59179 6.65680 7.11876 7.80313 8.33235 9.17883 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.030653 B = 0.002234 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.234791 B =12527.906963 C =12876.068985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.535 3.465 4 O -0.526 6.526 5 C -0.147 4.147 6 C -0.063 4.063 7 C -0.159 4.159 8 C 0.523 3.477 9 O -0.529 6.529 10 O -0.342 6.342 11 C 0.105 3.895 12 C -0.133 4.133 13 C 0.146 3.854 14 N -0.610 5.610 15 C -0.266 4.266 16 H 0.070 0.930 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.970 3.030 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.276 1.276 23 C 0.179 3.821 24 C -0.120 4.120 25 C -0.057 4.057 26 C -0.057 4.057 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.134 0.866 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.013 0.987 36 H 0.066 0.934 37 H 0.252 0.748 38 H 0.000 1.000 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.714 0.342 -1.260 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.379 3.621 4 O -0.415 6.415 5 C -0.149 4.149 6 C -0.100 4.100 7 C -0.160 4.160 8 C 0.367 3.633 9 O -0.418 6.418 10 O -0.258 6.258 11 C 0.051 3.949 12 C -0.172 4.172 13 C 0.020 3.980 14 N -0.334 5.334 15 C -0.396 4.396 16 H 0.087 0.913 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.798 3.202 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.201 1.201 23 C 0.053 3.947 24 C -0.159 4.159 25 C -0.094 4.094 26 C -0.094 4.094 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.152 0.848 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.018 0.982 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -26.624 0.883 -1.153 26.663 hybrid contribution 0.922 -0.041 0.004 0.923 sum -25.702 0.842 -1.149 25.741 Atomic orbital electron populations 1.23653 0.73988 1.06084 1.02855 1.86489 1.25352 1.31719 1.83199 1.21298 0.88163 0.81402 0.71269 1.90690 1.66863 1.37526 1.46395 1.23380 0.86941 1.01294 1.03249 1.23839 0.87616 0.93960 1.04589 1.23088 0.86006 1.02653 1.04220 1.21728 0.88391 0.81941 0.71223 1.90673 1.74492 1.30176 1.46498 1.86525 1.21046 1.35467 1.82791 1.22694 0.74569 0.99788 0.97858 1.22280 0.97361 1.02417 0.95147 1.20965 0.90763 0.90267 0.96019 1.44369 1.39972 1.36807 1.12218 1.19485 1.02813 1.24263 0.93037 0.91253 1.25842 0.98571 1.02844 0.97207 1.70159 1.36148 1.42716 1.09053 0.85302 0.78153 0.79658 0.77077 1.20200 1.22072 1.20145 1.20601 0.89276 0.99322 0.85480 1.22178 0.96509 0.96858 1.00401 1.24570 0.86557 1.02883 0.95351 1.24100 0.86767 1.02636 0.95935 0.91624 0.91618 0.84774 0.88994 0.88835 0.91601 0.90768 0.91131 0.96864 0.91512 0.93901 0.98165 0.91266 0.90292 0.91118 0.88278 0.86572 0.86510 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.43 16 2 O -0.35 -5.12 10.56 -51.35 -0.54 -5.67 16 3 C 0.54 9.53 8.07 71.24 0.57 10.11 16 4 O -0.53 -12.29 16.84 21.97 0.37 -11.92 16 5 C -0.15 -2.28 3.61 -62.86 -0.23 -2.50 16 6 C -0.06 -1.10 7.77 30.61 0.24 -0.87 16 7 C -0.16 -3.07 3.47 -63.69 -0.22 -3.29 16 8 C 0.52 14.70 8.04 71.24 0.57 15.28 16 9 O -0.53 -18.31 16.31 21.96 0.36 -17.96 16 10 O -0.34 -10.26 9.88 -51.37 -0.51 -10.76 16 11 C 0.11 3.69 2.42 30.62 0.07 3.76 16 12 C -0.13 -4.67 5.72 30.67 0.18 -4.49 16 13 C 0.15 6.13 6.52 86.36 0.56 6.69 16 14 N -0.61 -30.51 2.99 -699.08 -2.09 -32.60 16 15 C -0.27 -14.42 9.58 84.03 0.81 -13.61 16 16 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 17 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16 18 N -0.94 -54.51 11.19 21.65 0.24 -54.27 16 19 Si 0.97 44.01 29.59 68.60 2.03 46.04 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 23 C 0.18 8.53 5.30 86.36 0.46 8.99 16 24 C -0.12 -4.48 5.74 30.67 0.18 -4.30 16 25 C -0.06 -0.80 7.95 31.90 0.25 -0.55 16 26 C -0.06 -0.82 7.84 31.08 0.24 -0.58 16 27 H 0.06 0.58 8.13 -2.39 -0.02 0.57 16 28 H 0.07 0.58 8.13 -2.39 -0.02 0.56 16 29 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.09 1.58 7.94 -2.39 -0.02 1.56 16 31 H 0.09 1.59 7.91 -2.39 -0.02 1.57 16 32 H 0.07 2.52 7.16 -2.38 -0.02 2.51 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 35 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 2.69 7.93 -2.38 -0.02 2.67 16 37 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 38 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.07 3.67 6.06 -2.38 -0.01 3.66 16 40 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 41 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.10 1.26 7.91 -2.38 -0.02 1.24 16 43 H 0.12 1.32 7.97 -2.39 -0.02 1.30 16 44 H 0.12 1.33 7.97 -2.39 -0.02 1.31 16 45 H 0.10 1.25 7.93 -2.39 -0.02 1.23 16 Total: -1.00 -68.93 374.42 6.15 -62.78 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.99 Total: 10.56 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 5.30 Total: 13.79 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -1.85 Total: -86.87 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.32 Total: -46.30 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -68.93 6.15 -62.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842738524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.234 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds