Wall clock time and date at job start Tue Mar 31 2020 14:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35991 * 116.99947 * 2 1 4 4 C 1.38547 * 120.04393 * 0.02562 * 3 2 1 5 5 C 1.38665 * 119.94624 * 180.02562 * 4 3 2 6 6 O 1.35978 * 119.97712 * 179.97438 * 5 4 3 7 7 C 1.38698 * 120.03675 * 359.97438 * 5 4 3 8 8 C 1.50703 * 119.95281 * 180.02562 * 7 5 4 9 9 N 1.46899 * 109.47066 * 284.50585 * 8 7 5 10 10 C 1.47440 * 110.99994 * 164.42799 * 9 8 7 11 11 C 1.54317 * 107.23470 * 123.25282 * 10 9 8 12 12 C 1.55139 * 103.01923 * 22.28679 * 11 10 9 13 13 O 1.42899 * 110.99135 * 82.47300 * 12 11 10 14 14 C 1.50704 * 110.99387 * 206.25306 * 12 11 10 15 15 H 1.07996 * 119.99711 * 118.54187 * 14 12 11 16 16 C 1.37876 * 119.99555 * 298.54765 * 14 12 11 17 17 N 1.31512 * 120.00510 * 359.97438 * 16 14 12 18 18 Si 1.86807 * 119.99714 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47019 * 89.99560 * 18 16 14 20 20 H 1.48494 * 109.46960 * 210.00021 * 18 16 14 21 21 H 1.48509 * 109.46853 * 329.99954 * 18 16 14 22 22 C 1.47850 * 110.99717 * 285.26759 * 9 8 7 23 23 C 1.38225 * 120.09101 * 359.97438 * 7 5 4 24 24 C 1.38532 * 120.05056 * 359.76666 * 23 7 5 25 25 O 1.36082 * 120.01769 * 180.25395 * 24 23 7 26 26 C 1.42904 * 116.99772 * 0.25373 * 25 24 23 27 27 H 1.08998 * 109.46816 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47680 * 59.99667 * 1 2 3 29 29 H 1.09004 * 109.46998 * 299.99513 * 1 2 3 30 30 H 1.07995 * 120.02366 * 359.97438 * 4 3 2 31 31 H 0.96698 * 114.00502 * 90.00216 * 6 5 4 32 32 H 1.08999 * 109.46974 * 44.50116 * 8 7 5 33 33 H 1.08996 * 109.47237 * 164.50523 * 8 7 5 34 34 H 1.08995 * 109.88951 * 242.66106 * 10 9 8 35 35 H 1.08999 * 109.88903 * 3.85041 * 10 9 8 36 36 H 1.09008 * 110.70414 * 140.66498 * 11 10 9 37 37 H 1.08993 * 110.71124 * 263.72833 * 11 10 9 38 38 H 0.96702 * 113.99986 * 61.45841 * 13 12 11 39 39 H 0.97000 * 119.99929 * 179.97438 * 17 16 14 40 40 H 1.08998 * 110.37531 * 332.46944 * 22 9 8 41 41 H 1.09001 * 110.37049 * 94.81436 * 22 9 8 42 42 H 1.07994 * 119.97280 * 180.02562 * 23 7 5 43 43 H 1.09003 * 109.46561 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.46813 * 299.99689 * 26 25 24 45 45 H 1.08998 * 109.47036 * 59.99919 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2926 2.3742 0.0005 5 6 1.9242 3.6087 0.0000 6 8 1.1851 4.7500 0.0000 7 6 3.3094 3.6798 -0.0005 8 6 3.9939 5.0224 -0.0005 9 7 3.9067 5.6165 -1.3412 10 6 4.2232 7.0560 -1.3029 11 6 5.3937 7.2929 -2.2803 12 6 5.2999 6.0769 -3.2392 13 8 4.3277 6.3049 -4.2614 14 6 6.6450 5.7574 -3.8390 15 1 7.1041 4.7974 -3.6546 16 6 7.2893 6.6906 -4.6231 17 7 6.7300 7.8595 -4.8480 18 14 8.9569 6.2948 -5.3661 19 1 8.7688 5.6697 -6.6998 20 1 9.7432 7.5460 -5.5123 21 1 9.6844 5.3541 -4.4766 22 6 4.8409 4.9538 -2.2761 23 6 4.0628 2.5209 0.0000 24 6 3.4357 1.2857 0.0060 25 8 4.1781 0.1453 0.0117 26 6 5.5991 0.2963 0.0169 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 0.2141 2.3190 0.0005 31 1 0.9717 5.0805 0.8833 32 1 3.5062 5.6788 0.7201 33 1 5.0412 4.8963 0.2735 34 1 3.3549 7.6351 -1.6169 35 1 4.5186 7.3440 -0.2940 36 1 5.2566 8.2261 -2.8268 37 1 6.3452 7.2954 -1.7488 38 1 4.5253 7.0614 -4.8304 39 1 7.1835 8.5161 -5.3993 40 1 5.6943 4.5460 -1.7344 41 1 4.3293 4.1657 -2.8287 42 1 5.1412 2.5785 0.0000 43 1 6.0689 -0.6872 0.0207 44 1 5.9095 0.8434 -0.8733 45 1 5.9026 0.8479 0.9066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843425287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:45 Heat of formation + Delta-G solvation = -124.707449 kcal Electronic energy + Delta-G solvation = -28432.551760 eV Core-core repulsion = 24416.623695 eV Total energy + Delta-G solvation = -4015.928065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.69463 -38.72326 -38.45260 -37.86013 -35.52487 -34.52103 -32.10597 -31.50866 -29.55003 -29.04404 -28.04744 -27.31464 -27.07626 -25.22378 -23.83476 -22.19628 -21.31381 -20.02111 -19.50235 -18.76066 -17.74001 -17.05076 -16.96173 -16.46506 -16.06810 -15.29115 -15.23199 -14.87515 -14.74576 -14.68885 -14.52985 -14.12448 -13.81290 -13.68695 -13.15166 -12.76930 -12.46693 -12.43497 -12.34622 -11.96506 -11.65587 -11.53154 -11.31646 -11.23778 -11.21930 -11.07983 -10.87716 -10.77031 -10.49892 -10.44175 -10.35635 -10.19844 -9.82662 -9.15316 -8.65215 -8.57266 -8.04002 -7.63065 -7.49682 -6.19016 -4.27251 1.25658 1.39087 3.19551 3.22563 3.28054 3.29650 3.32036 3.59063 4.30210 4.31631 4.68266 4.83083 4.95498 4.97773 5.04689 5.08581 5.11709 5.19616 5.23272 5.33495 5.37482 5.50857 5.54232 5.67349 5.71905 5.84284 5.98047 6.04956 6.10201 6.16487 6.26293 6.50396 6.53587 6.64250 6.73720 6.92683 7.00206 7.12059 7.44962 7.50692 7.52396 7.70320 7.80608 7.84501 7.88754 8.20851 8.74855 9.41475 9.57466 10.87764 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.003624 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.433711 B = 7725.008484 C = 8738.156270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.108 3.892 4 C -0.203 4.203 5 C 0.134 3.866 6 O -0.477 6.477 7 C -0.088 4.088 8 C 0.098 3.902 9 N -0.512 5.512 10 C 0.046 3.954 11 C -0.145 4.145 12 C 0.252 3.748 13 O -0.578 6.578 14 C -0.535 4.535 15 H 0.059 0.941 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.063 3.937 23 C -0.149 4.149 24 C 0.089 3.911 25 O -0.309 6.309 26 C 0.025 3.975 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.138 0.862 31 H 0.379 0.621 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.376 0.624 39 H 0.266 0.734 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 -9.918 13.840 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.062 3.938 4 C -0.222 4.222 5 C 0.088 3.912 6 O -0.286 6.286 7 C -0.089 4.089 8 C -0.030 4.030 9 N -0.236 5.236 10 C -0.082 4.082 11 C -0.184 4.184 12 C 0.211 3.789 13 O -0.385 6.385 14 C -0.574 4.574 15 H 0.077 0.923 16 C -0.131 4.131 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.064 4.064 23 C -0.168 4.168 24 C 0.044 3.956 25 O -0.223 6.223 26 C -0.070 4.070 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.156 0.844 31 H 0.234 0.766 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.225 0.775 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.155 0.845 43 H 0.117 0.883 44 H 0.077 0.923 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.983 -10.772 13.254 19.298 hybrid contribution 1.998 0.876 0.067 2.183 sum -6.984 -9.896 13.321 18.005 Atomic orbital electron populations 1.23043 0.78799 1.03726 1.01284 1.86161 1.20843 1.25851 1.89186 1.17943 0.88901 0.84771 1.02188 1.21233 1.00313 0.91103 1.09550 1.17765 0.88577 0.85037 0.99832 1.84994 1.72176 1.39307 1.32078 1.19929 0.92832 0.95175 1.01003 1.21010 0.97275 0.91833 0.92855 1.63577 1.51622 1.02788 1.05624 1.22826 0.98869 0.88593 0.97888 1.23256 0.95183 1.02532 0.97396 1.19536 0.86262 0.88528 0.84552 1.86168 1.50763 1.54466 1.47106 1.21546 1.03126 1.01220 1.31510 0.92253 1.24993 0.97971 0.94641 0.95454 1.69741 1.39077 1.05922 1.38593 0.86501 0.83433 0.77799 0.79694 1.20430 1.21126 1.19893 1.23003 0.92340 0.97793 0.93256 1.20891 1.00364 0.90225 1.05326 1.18136 0.88128 0.86000 1.03358 1.86151 1.18651 1.28127 1.89322 1.23075 0.78657 1.03709 1.01565 0.88377 0.92601 0.92882 0.84385 0.76601 0.90770 0.94426 0.91540 0.94738 0.90450 0.92741 0.77549 0.92422 0.93952 0.91493 0.84496 0.88345 0.92308 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.16 10.28 -34.29 -0.35 -4.51 16 3 C 0.11 1.56 6.70 -39.13 -0.26 1.30 16 4 C -0.20 -2.72 8.97 -39.31 -0.35 -3.08 16 5 C 0.13 1.96 6.67 -39.25 -0.26 1.70 16 6 O -0.48 -6.58 12.81 -19.67 -0.25 -6.83 16 7 C -0.09 -1.36 5.06 -104.46 -0.53 -1.89 16 8 C 0.10 1.58 4.42 -4.98 -0.02 1.56 16 9 N -0.51 -10.24 5.11 -232.69 -1.19 -11.43 16 10 C 0.05 0.91 6.84 -2.84 -0.02 0.89 16 11 C -0.14 -3.36 5.37 -24.91 -0.13 -3.49 16 12 C 0.25 6.38 0.87 -89.63 -0.08 6.30 16 13 O -0.58 -15.64 13.16 -35.23 -0.46 -16.11 16 14 C -0.54 -14.51 8.27 -34.44 -0.28 -14.79 16 15 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 16 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 17 N -0.89 -24.02 10.75 55.43 0.60 -23.43 16 18 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.06 1.42 5.52 -2.29 -0.01 1.41 16 23 C -0.15 -2.18 8.65 -39.48 -0.34 -2.53 16 24 C 0.09 1.34 6.70 -39.14 -0.26 1.07 16 25 O -0.31 -4.44 10.28 -34.58 -0.36 -4.79 16 26 C 0.03 0.26 9.81 101.05 0.99 1.26 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.14 1.52 6.30 -52.49 -0.33 1.19 16 31 H 0.38 3.18 9.06 45.56 0.41 3.59 16 32 H 0.07 1.05 7.71 -51.93 -0.40 0.65 16 33 H 0.04 0.59 7.50 -51.93 -0.39 0.20 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.03 0.60 7.47 -51.93 -0.39 0.21 16 36 H 0.08 1.91 7.54 -51.92 -0.39 1.52 16 37 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 38 H 0.38 10.15 7.56 45.56 0.34 10.50 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.04 0.91 7.42 -51.93 -0.39 0.53 16 41 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.14 1.83 6.23 -52.49 -0.33 1.50 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 45 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -32.29 366.34 -7.29 -39.58 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.10 Total: 13.53 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -0.67 Total: -7.24 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.59 Total: -34.86 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.42 Total: -32.24 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.29 -7.29 -39.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.131 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds