Wall clock time and date at job start Tue Mar 31 2020 14:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35992 * 116.99917 * 2 1 4 4 C 1.38541 * 120.04545 * 0.02562 * 3 2 1 5 5 C 1.38661 * 119.94885 * 179.97438 * 4 3 2 6 6 O 1.35980 * 119.98414 * 180.02562 * 5 4 3 7 7 C 1.38695 * 120.03400 * 0.02562 * 5 4 3 8 8 C 1.50703 * 119.95668 * 179.97438 * 7 5 4 9 9 N 1.46905 * 109.47212 * 76.46719 * 8 7 5 10 10 C 1.48715 * 111.01033 * 80.07611 * 9 8 7 11 11 C 1.54384 * 104.51589 * 158.97027 * 10 9 8 12 12 C 1.54260 * 105.14527 * 336.26745 * 11 10 9 13 13 O 1.42910 * 110.32415 * 241.05272 * 12 11 10 14 14 C 1.50699 * 110.32356 * 118.85035 * 12 11 10 15 15 H 1.08005 * 120.00166 * 359.30288 * 14 12 11 16 16 C 1.37871 * 120.00065 * 179.31129 * 14 12 11 17 17 N 1.31520 * 120.00123 * 187.35322 * 16 14 12 18 18 Si 1.86799 * 120.00378 * 7.35382 * 16 14 12 19 19 H 1.48500 * 109.47273 * 94.50794 * 18 16 14 20 20 H 1.48493 * 109.47473 * 214.51232 * 18 16 14 21 21 H 1.48502 * 109.46790 * 334.51228 * 18 16 14 22 22 C 1.48562 * 110.99888 * 195.58592 * 9 8 7 23 23 C 1.38229 * 120.09210 * 0.25200 * 7 5 4 24 24 C 1.38529 * 120.05095 * 359.49171 * 23 7 5 25 25 O 1.36076 * 120.02071 * 180.27261 * 24 23 7 26 26 C 1.42896 * 117.00038 * 0.23564 * 25 24 23 27 27 H 1.08994 * 109.47552 * 299.99807 * 1 2 3 28 28 H 1.09001 * 109.47096 * 59.99961 * 1 2 3 29 29 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.02264 * 359.95026 * 4 3 2 31 31 H 0.96694 * 113.99993 * 265.12273 * 6 5 4 32 32 H 1.09004 * 109.47084 * 316.47409 * 8 7 5 33 33 H 1.08999 * 109.47503 * 196.47128 * 8 7 5 34 34 H 1.08999 * 110.38984 * 40.24803 * 10 9 8 35 35 H 1.08997 * 110.51258 * 277.75250 * 10 9 8 36 36 H 1.08998 * 110.32237 * 217.32449 * 11 10 9 37 37 H 1.08995 * 110.32754 * 95.21334 * 11 10 9 38 38 H 0.96696 * 113.99867 * 298.55349 * 13 12 11 39 39 H 0.96995 * 119.99994 * 179.97438 * 17 16 14 40 40 H 1.08998 * 110.41152 * 82.18487 * 22 9 8 41 41 H 1.08993 * 110.41423 * 319.73702 * 22 9 8 42 42 H 1.07998 * 119.97305 * 179.72281 * 23 7 5 43 43 H 1.08998 * 109.47772 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.47255 * 300.00205 * 26 25 24 45 45 H 1.09011 * 109.47117 * 59.99649 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2927 2.3742 0.0005 5 6 1.9243 3.6086 0.0011 6 8 1.1853 4.7501 0.0021 7 6 3.3094 3.6797 0.0005 8 6 3.9940 5.0223 0.0005 9 7 3.9283 5.6055 1.3472 10 6 4.9699 5.0206 2.2330 11 6 5.1418 6.0566 3.3646 12 6 4.6656 7.3944 2.7620 13 8 5.7321 8.3457 2.7603 14 6 3.4883 7.9280 3.5369 15 1 3.0966 7.3712 4.3755 16 6 2.9112 9.1267 3.1754 17 7 1.9808 9.6639 3.9341 18 14 3.4505 9.9880 1.6080 19 1 2.5409 9.6092 0.4969 20 1 3.4009 11.4584 1.8089 21 1 4.8385 9.5808 1.2720 22 6 4.2465 7.0563 1.3152 23 6 4.0629 2.5208 -0.0058 24 6 3.4357 1.2856 -0.0010 25 8 4.1781 0.1452 -0.0016 26 6 5.5991 0.2961 -0.0021 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2141 2.3189 0.0001 31 1 1.0342 5.1216 -0.8777 32 1 3.4950 5.6846 -0.7069 33 1 5.0369 4.8984 -0.2913 34 1 5.9052 4.8947 1.6876 35 1 4.6342 4.0664 2.6390 36 1 6.1890 6.1255 3.6590 37 1 4.5252 5.7868 4.2219 38 1 6.0671 8.5626 3.6411 39 1 1.5750 10.5075 3.6799 40 1 3.3663 7.6323 1.0299 41 1 5.0685 7.2501 0.6262 42 1 5.1413 2.5785 -0.0107 43 1 6.0690 -0.6874 -0.0021 44 1 5.9058 0.8457 -0.8920 45 1 5.9065 0.8453 0.8880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843425288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:47 Heat of formation + Delta-G solvation = -141.290988 kcal Electronic energy + Delta-G solvation = -28516.709451 eV Core-core repulsion = 24500.062269 eV Total energy + Delta-G solvation = -4016.647182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74910 -40.30178 -39.42760 -39.25624 -36.99887 -36.19430 -34.41672 -33.04985 -30.89148 -30.45999 -29.93153 -28.33043 -28.04572 -26.57872 -25.36555 -23.26840 -22.84689 -21.94605 -21.27459 -19.81081 -19.08822 -18.75510 -18.09569 -17.53497 -17.26208 -17.07374 -16.88845 -16.24214 -16.13949 -15.83072 -15.52576 -15.43360 -15.31201 -15.07012 -14.82529 -14.45159 -14.29143 -13.76961 -13.61708 -13.46968 -13.36845 -13.26811 -12.96681 -12.60648 -12.45313 -12.37546 -12.21790 -12.09799 -12.06083 -11.87679 -11.63301 -11.55460 -11.41869 -10.95788 -10.74098 -10.20758 -9.72165 -9.27223 -8.69123 -8.30886 -6.40455 0.18344 0.28362 1.36590 1.41939 1.66924 2.29686 2.35305 2.42401 2.47907 3.02014 3.19826 3.31935 3.69583 3.72044 3.79843 3.98369 4.14981 4.17416 4.23986 4.31091 4.38355 4.38735 4.40858 4.43637 4.44474 4.50166 4.62767 4.66311 4.72134 4.72514 4.76908 4.89539 4.97750 5.05789 5.06189 5.27171 5.39394 5.47384 5.53512 5.62892 5.96277 6.07065 6.15824 6.22057 6.54684 6.68550 6.94459 7.20187 7.39151 8.84542 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.003733 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.549659 B = 7498.405411 C = 8334.910544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.102 3.898 4 C -0.204 4.204 5 C 0.125 3.875 6 O -0.498 6.498 7 C -0.106 4.106 8 C 0.092 3.908 9 N -0.505 5.505 10 C 0.046 3.954 11 C -0.136 4.136 12 C 0.214 3.786 13 O -0.581 6.581 14 C -0.533 4.533 15 H 0.029 0.971 16 C 0.030 3.970 17 N -0.943 5.943 18 Si 0.936 3.064 19 H -0.285 1.285 20 H -0.304 1.304 21 H -0.208 1.208 22 C 0.058 3.942 23 C -0.142 4.142 24 C 0.076 3.924 25 O -0.326 6.326 26 C 0.017 3.983 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.154 0.846 31 H 0.401 0.599 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.375 0.625 39 H 0.264 0.736 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.158 0.842 43 H 0.119 0.881 44 H 0.067 0.933 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 -19.040 -13.466 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.056 3.944 4 C -0.223 4.223 5 C 0.080 3.920 6 O -0.310 6.310 7 C -0.108 4.108 8 C -0.035 4.035 9 N -0.229 5.229 10 C -0.081 4.081 11 C -0.174 4.174 12 C 0.174 3.826 13 O -0.389 6.389 14 C -0.570 4.570 15 H 0.048 0.952 16 C -0.169 4.169 17 N -0.582 5.582 18 Si 0.762 3.238 19 H -0.212 1.212 20 H -0.232 1.232 21 H -0.130 1.130 22 C -0.070 4.070 23 C -0.161 4.161 24 C 0.030 3.970 25 O -0.241 6.241 26 C -0.077 4.077 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.171 0.829 31 H 0.258 0.742 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.223 0.777 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.175 0.825 43 H 0.137 0.863 44 H 0.085 0.915 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.335 -19.520 -13.288 24.008 hybrid contribution 0.148 1.374 -0.249 1.404 sum 4.484 -18.146 -13.537 23.078 Atomic orbital electron populations 1.23346 0.76651 1.05612 1.02066 1.86134 1.23118 1.25565 1.88984 1.18187 0.89431 0.85175 1.01622 1.21347 1.01299 0.90507 1.09135 1.18035 0.88952 0.85533 0.99509 1.84966 1.72581 1.38763 1.34696 1.19864 0.92957 0.94904 1.03065 1.21028 0.99138 0.92498 0.90851 1.65265 1.45879 1.01983 1.09804 1.23058 0.93249 0.97689 0.94150 1.22875 1.00818 0.95545 0.98180 1.19622 0.84797 0.86177 0.92011 1.86451 1.53620 1.64396 1.34404 1.21591 1.14963 1.05566 1.14902 0.95246 1.25794 0.93836 0.97551 0.99701 1.70099 1.28935 1.19496 1.39706 0.86068 0.82021 0.75956 0.79799 1.21180 1.23176 1.12960 1.23015 0.97915 0.89478 0.96606 1.20964 1.01056 0.89382 1.04732 1.18301 0.88437 0.86472 1.03767 1.86143 1.20550 1.28058 1.89322 1.23350 0.76793 1.05423 1.02177 0.92466 0.91514 0.85992 0.82893 0.74160 0.90067 0.91898 0.92103 0.90703 0.89839 0.93174 0.77668 0.92706 0.92657 0.93799 0.82499 0.86277 0.91481 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.32 -8.07 10.28 -79.52 -0.82 -8.89 16 3 C 0.10 2.72 6.70 22.56 0.15 2.87 16 4 C -0.20 -5.30 8.97 22.44 0.20 -5.10 16 5 C 0.13 3.62 6.67 22.48 0.15 3.77 16 6 O -0.50 -15.12 12.80 -93.32 -1.19 -16.31 16 7 C -0.11 -2.93 5.23 -19.76 -0.10 -3.04 16 8 C 0.09 2.67 4.63 85.56 0.40 3.06 16 9 N -0.50 -18.88 5.29 -885.60 -4.68 -23.56 16 10 C 0.05 1.53 6.29 86.42 0.54 2.08 16 11 C -0.14 -5.27 6.43 31.49 0.20 -5.06 16 12 C 0.21 9.79 0.90 -10.64 -0.01 9.78 16 13 O -0.58 -24.93 10.09 -148.98 -1.50 -26.43 16 14 C -0.53 -30.64 8.81 25.60 0.23 -30.42 16 15 H 0.03 1.91 7.60 -2.91 -0.02 1.89 16 16 C 0.03 1.77 5.43 84.65 0.46 2.23 16 17 N -0.94 -60.17 13.96 21.45 0.30 -59.87 16 18 Si 0.94 45.98 24.10 68.60 1.65 47.63 16 19 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 20 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 21 H -0.21 -9.51 5.18 99.48 0.52 -8.99 16 22 C 0.06 2.45 4.09 86.45 0.35 2.80 16 23 C -0.14 -3.40 8.65 22.34 0.19 -3.20 16 24 C 0.08 1.96 6.70 22.56 0.15 2.11 16 25 O -0.33 -7.85 10.28 -80.47 -0.83 -8.67 16 26 C 0.02 0.24 9.81 113.37 1.11 1.36 16 27 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 28 H 0.07 0.88 7.66 -2.39 -0.02 0.87 16 29 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 30 H 0.15 3.37 6.30 -2.91 -0.02 3.35 16 31 H 0.40 8.04 9.06 -74.06 -0.67 7.37 16 32 H 0.08 2.27 7.82 -2.38 -0.02 2.25 16 33 H 0.06 1.52 7.46 -2.39 -0.02 1.51 16 34 H 0.06 1.68 7.68 -2.39 -0.02 1.66 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.08 2.75 7.98 -2.39 -0.02 2.73 16 37 H 0.05 2.15 7.42 -2.39 -0.02 2.13 16 38 H 0.37 14.04 9.08 -74.06 -0.67 13.37 16 39 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.06 2.63 4.97 -2.39 -0.01 2.62 16 41 H 0.04 1.71 7.93 -2.39 -0.02 1.69 16 42 H 0.16 2.91 6.24 -2.91 -0.02 2.89 16 43 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 0.78 7.65 -2.39 -0.02 0.77 16 45 H 0.06 0.82 7.67 -2.38 -0.02 0.80 16 Total: -1.00 -78.61 358.24 -2.43 -81.05 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -0.50 Total: 30.44 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 5.14 Total: -15.38 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -4.38 Total: -83.43 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -4.34 Total: -60.31 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.65 Total: 47.63 kcal Total: -78.61 -2.43 -81.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.245 kcal (2) G-P(sol) polarization free energy of solvation -78.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds