Wall clock time and date at job start Tue Mar 31 2020 14:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99869 * 2 1 4 4 O 1.42898 * 109.47616 * 74.99846 * 3 2 1 5 5 C 1.42900 * 114.00084 * 74.99726 * 4 3 2 6 6 C 1.53000 * 109.47466 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47283 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47128 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00119 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00124 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99954 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97567 * 12 11 9 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96947 * 89.99413 * 12 11 9 27 27 H 1.08995 * 109.47357 * 60.00746 * 1 2 3 28 28 H 1.09005 * 109.46740 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47455 * 299.99877 * 1 2 3 30 30 H 1.09004 * 109.46890 * 314.99781 * 3 2 1 31 31 H 1.09005 * 109.46898 * 194.99968 * 3 2 1 32 32 H 1.09007 * 109.47009 * 60.00355 * 5 4 3 33 33 H 1.09003 * 109.47217 * 300.00513 * 5 4 3 34 34 H 1.09007 * 109.46913 * 60.00056 * 6 5 4 35 35 H 1.09003 * 109.47125 * 300.00329 * 6 5 4 36 36 H 1.09007 * 109.47155 * 60.00137 * 7 6 5 37 37 H 1.09003 * 109.47254 * 300.00184 * 7 6 5 38 38 H 0.97009 * 119.99766 * 0.02562 * 8 7 6 39 39 H 1.08993 * 109.47200 * 59.99691 * 11 9 8 40 40 H 1.09003 * 109.46989 * 299.99567 * 11 9 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 44 44 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.03594 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8826 1.3013 5 6 2.7911 1.3427 2.2658 6 6 2.5690 2.0299 3.6147 7 6 3.5391 1.4523 4.6472 8 7 3.3268 2.1107 5.9386 9 6 4.0743 1.7612 7.0041 10 8 4.9224 0.9012 6.8941 11 6 3.8555 2.4381 8.3327 12 6 4.8112 1.8693 9.3497 13 6 4.4409 0.7737 10.1086 14 6 5.3148 0.2492 11.0432 15 6 6.5632 0.8141 11.2168 16 6 6.9357 1.9174 10.4605 17 8 8.1597 2.4785 10.6332 18 6 8.9191 1.9943 11.6366 19 1 8.5803 1.1424 12.2074 20 6 10.1349 2.5900 11.9355 21 7 10.8756 2.1178 12.9149 22 14 10.7205 4.0638 10.9485 23 1 10.2338 5.3127 11.5877 24 1 12.2050 4.0744 10.9083 25 1 10.1886 3.9761 9.5649 26 6 6.0553 2.4424 9.5232 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.4941 1.9329 -0.7267 31 1 3.0648 1.2336 -0.2660 32 1 3.8162 1.5117 1.9361 33 1 2.6148 0.2721 2.3705 34 1 1.5438 1.8606 3.9443 35 1 2.7449 3.1005 3.5104 36 1 4.5641 1.6220 4.3174 37 1 3.3636 0.3816 4.7516 38 1 2.6482 2.7983 6.0267 39 1 2.8308 2.2681 8.6627 40 1 4.0307 3.5089 8.2281 41 1 3.4672 0.3271 9.9710 42 1 5.0226 -0.6060 11.6346 43 1 7.2472 0.4007 11.9432 44 1 11.7263 2.5343 13.1237 45 1 6.3436 3.2983 8.9308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848169200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:53 Heat of formation + Delta-G solvation = -140.900471 kcal Electronic energy + Delta-G solvation = -25668.184561 eV Core-core repulsion = 21651.554314 eV Total energy + Delta-G solvation = -4016.630248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.90794 -39.34969 -38.88594 -37.05229 -36.60878 -35.35356 -32.56397 -32.30866 -31.67297 -29.40358 -28.07305 -27.45360 -25.91912 -25.10747 -24.40528 -22.16899 -21.76192 -21.10950 -20.06523 -17.87780 -17.66510 -17.39039 -17.12377 -16.96994 -16.57381 -16.10787 -15.86646 -15.30623 -15.08511 -14.74919 -14.58535 -14.29562 -14.01008 -13.82265 -13.53589 -13.48188 -13.39408 -12.60845 -12.50872 -12.36493 -12.29342 -12.11393 -12.01007 -11.76904 -11.50117 -11.37554 -11.26455 -10.80227 -10.76586 -10.68834 -10.66981 -10.37091 -10.11866 -9.78989 -9.34038 -9.18945 -8.82331 -8.09546 -7.30443 -6.36218 -4.02720 2.05539 2.34009 2.73504 2.88309 3.25313 3.28418 3.28885 3.41611 3.44620 4.28440 4.47607 4.49352 4.54504 4.60838 4.75759 4.76913 4.78532 4.91807 4.95640 4.99945 5.07362 5.12394 5.13440 5.23264 5.24469 5.32851 5.38903 5.59798 5.68320 5.71965 5.74693 5.89276 6.17132 6.23214 6.30031 6.31006 6.58082 6.71580 6.84215 7.15169 7.26412 7.36571 7.40717 7.66308 7.86306 8.09781 8.27475 8.99444 9.62844 10.71683 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.001848 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.406345 B =15148.405331 C =15984.099079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.405 6.405 3 C 0.214 3.786 4 O -0.402 6.402 5 C 0.065 3.935 6 C -0.129 4.129 7 C 0.122 3.878 8 N -0.739 5.739 9 C 0.513 3.487 10 O -0.518 6.518 11 C -0.093 4.093 12 C -0.036 4.036 13 C -0.188 4.188 14 C -0.076 4.076 15 C -0.217 4.217 16 C 0.160 3.840 17 O -0.220 6.220 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.882 5.882 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.174 4.174 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.400 0.600 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.278 0.722 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.180 1.074 -22.371 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.325 6.325 3 C 0.099 3.901 4 O -0.322 6.322 5 C -0.011 4.011 6 C -0.167 4.167 7 C -0.002 4.002 8 N -0.394 5.394 9 C 0.299 3.701 10 O -0.392 6.392 11 C -0.133 4.133 12 C -0.037 4.037 13 C -0.207 4.207 14 C -0.095 4.095 15 C -0.236 4.236 16 C 0.108 3.892 17 O -0.125 6.125 18 C -0.464 4.464 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.194 4.194 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.233 0.767 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.220 0.607 -22.400 30.861 hybrid contribution 0.040 0.838 -0.316 0.896 sum -21.180 1.445 -22.716 31.092 Atomic orbital electron populations 1.22775 0.80408 1.02841 1.00465 1.88020 1.20937 1.29596 1.93943 1.23950 0.98759 0.82729 0.84634 1.87969 1.60940 1.62288 1.21050 1.22390 0.92584 0.97929 0.88231 1.21681 1.00573 1.01349 0.93109 1.21123 0.99226 0.97423 0.82407 1.45983 1.40594 1.42922 1.09853 1.20776 0.80829 0.83067 0.85415 1.90769 1.32603 1.31212 1.84604 1.20585 1.00674 1.01004 0.91051 1.18663 0.93507 0.95948 0.95540 1.20422 1.00152 0.99183 1.00909 1.20739 0.93403 0.98314 0.97010 1.21296 0.98141 0.99431 1.04767 1.19013 0.85135 0.91585 0.93454 1.83567 1.22557 1.56845 1.49544 1.20765 1.00669 1.15543 1.09382 0.87666 1.24449 0.94984 0.98529 0.96049 1.69648 1.12927 1.41241 1.28175 0.86191 0.77512 0.81791 0.81473 1.19938 1.20830 1.18382 1.19938 0.93395 1.03546 1.02475 0.93908 0.89668 0.93251 0.89057 0.89009 0.92614 0.92136 0.90464 0.90381 0.91294 0.91325 0.76652 0.88262 0.88216 0.87726 0.87170 0.84993 0.91143 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.89 101.05 1.10 1.27 16 2 O -0.40 -3.19 10.76 -59.04 -0.64 -3.83 16 3 C 0.21 1.31 7.07 101.05 0.71 2.02 16 4 O -0.40 -3.15 10.40 -59.04 -0.61 -3.77 16 5 C 0.07 0.47 5.82 37.16 0.22 0.68 16 6 C -0.13 -0.85 5.70 -26.73 -0.15 -1.00 16 7 C 0.12 1.09 5.67 -4.04 -0.02 1.07 16 8 N -0.74 -6.97 5.56 -60.29 -0.33 -7.31 16 9 C 0.51 7.04 7.82 -10.99 -0.09 6.95 16 10 O -0.52 -9.83 16.03 5.56 0.09 -9.74 16 11 C -0.09 -1.16 5.83 -29.03 -0.17 -1.33 16 12 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 13 C -0.19 -3.32 9.70 -39.53 -0.38 -3.70 16 14 C -0.08 -1.47 10.04 -39.61 -0.40 -1.86 16 15 C -0.22 -4.93 9.17 -39.39 -0.36 -5.29 16 16 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 17 O -0.22 -6.02 8.59 0.05 0.00 -6.02 16 18 C -0.39 -11.25 9.95 30.89 0.31 -10.94 16 19 H 0.11 3.11 5.44 -52.49 -0.29 2.83 16 20 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 21 N -0.88 -25.95 13.96 55.48 0.77 -25.18 16 22 Si 0.90 22.20 28.62 -169.99 -4.86 17.33 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.17 -3.63 9.65 -39.40 -0.38 -4.01 16 27 H 0.04 0.17 8.11 -51.93 -0.42 -0.25 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.28 8.03 -51.93 -0.42 -0.13 16 30 H 0.09 0.38 8.01 -51.93 -0.42 -0.03 16 31 H 0.09 0.44 8.01 -51.93 -0.42 0.02 16 32 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 33 H 0.06 0.46 8.03 -51.93 -0.42 0.04 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.40 2.43 8.47 -40.82 -0.35 2.09 16 39 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 41 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 43 H 0.13 3.11 5.64 -52.49 -0.30 2.82 16 44 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.11 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -35.51 386.27 -6.99 -42.50 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.79 Total: 2.10 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -0.43 Total: -11.91 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.44 Total: -32.49 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -1.16 Total: -23.35 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.86 Total: 17.33 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.51 -6.99 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848169200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.404 kcal (2) G-P(sol) polarization free energy of solvation -35.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds