Wall clock time and date at job start Tue Mar 31 2020 14:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00119 * 2 1 4 4 O 1.42898 * 109.46976 * 74.99873 * 3 2 1 5 5 C 1.42893 * 114.00332 * 75.00361 * 4 3 2 6 6 C 1.53000 * 109.47257 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.47044 * 179.97438 * 6 5 4 8 8 N 1.46494 * 109.46938 * 179.97438 * 7 6 5 9 9 C 1.34784 * 119.99938 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99845 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99892 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.46735 * 180.02562 * 11 9 8 13 13 C 1.38305 * 119.93408 * 89.99836 * 12 11 9 14 14 C 1.38101 * 120.07071 * 179.97438 * 13 12 11 15 15 C 1.38876 * 119.92956 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06861 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53840 * 16 15 14 18 18 H 1.08003 * 120.00029 * 354.94359 * 17 16 15 19 19 C 1.38659 * 120.00122 * 174.94542 * 17 16 15 20 20 N 1.31558 * 119.99705 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00035 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47181 * 89.99980 * 21 19 17 23 23 H 1.48498 * 109.47260 * 210.00361 * 21 19 17 24 24 H 1.48502 * 109.47130 * 330.00179 * 21 19 17 25 25 C 1.38880 * 119.86555 * 0.27954 * 15 14 13 26 26 C 1.38102 * 119.92551 * 359.44514 * 25 15 14 27 27 H 1.08995 * 109.47114 * 60.00208 * 1 2 3 28 28 H 1.09000 * 109.46943 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47482 * 300.00002 * 1 2 3 30 30 H 1.08996 * 109.47063 * 315.00022 * 3 2 1 31 31 H 1.09000 * 109.47232 * 194.99813 * 3 2 1 32 32 H 1.09003 * 109.47198 * 59.99630 * 5 4 3 33 33 H 1.09004 * 109.47171 * 299.99670 * 5 4 3 34 34 H 1.08997 * 109.47389 * 60.00108 * 6 5 4 35 35 H 1.08996 * 109.47385 * 299.99556 * 6 5 4 36 36 H 1.09003 * 109.47040 * 60.00153 * 7 6 5 37 37 H 1.08996 * 109.46932 * 300.00158 * 7 6 5 38 38 H 0.97005 * 120.00412 * 0.02562 * 8 7 6 39 39 H 1.08986 * 109.47293 * 59.99986 * 11 9 8 40 40 H 1.09005 * 109.47046 * 299.99669 * 11 9 8 41 41 H 1.07999 * 119.96326 * 0.02562 * 13 12 11 42 42 H 1.07997 * 120.03156 * 180.02562 * 14 13 12 43 43 H 0.96997 * 119.99350 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.04097 * 179.72435 * 25 15 14 45 45 H 1.07997 * 119.96688 * 180.27743 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8854 1.8824 1.3013 5 6 2.7911 1.3426 2.2658 6 6 2.5697 2.0306 3.6144 7 6 3.5391 1.4521 4.6472 8 7 3.3275 2.1113 5.9383 9 6 4.0738 1.7604 7.0044 10 8 4.9209 0.8992 6.8947 11 6 3.8558 2.4381 8.3327 12 6 4.8107 1.8684 9.3499 13 6 6.0574 2.4416 9.5230 14 6 6.9344 1.9221 10.4548 15 6 6.5636 0.8227 11.2180 16 8 7.4233 0.3101 12.1350 17 6 8.5744 0.9822 12.3376 18 1 8.8150 1.8383 11.7246 19 6 9.4495 0.5743 13.3329 20 7 10.5725 1.2304 13.5308 21 14 9.0331 -0.9059 14.3935 22 1 9.5723 -2.1361 13.7601 23 1 9.6375 -0.7363 15.7392 24 1 7.5584 -1.0221 14.5243 25 6 5.3134 0.2455 11.0373 26 6 4.4387 0.7731 10.1080 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.4942 1.9329 -0.7266 31 1 3.0649 1.2336 -0.2659 32 1 3.8162 1.5115 1.9361 33 1 2.6149 0.2720 2.3705 34 1 1.5447 1.8620 3.9444 35 1 2.7463 3.1010 3.5095 36 1 4.5644 1.6204 4.3175 37 1 3.3622 0.3817 4.7520 38 1 2.6499 2.7998 6.0262 39 1 2.8306 2.2702 8.6622 40 1 4.0332 3.5085 8.2279 41 1 6.3450 3.2968 8.9295 42 1 7.9076 2.3704 10.5898 43 1 11.1844 0.9452 14.2273 44 1 5.0238 -0.6123 11.6261 45 1 3.4647 0.3274 9.9701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848170433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:56 Heat of formation + Delta-G solvation = -166.780966 kcal Electronic energy + Delta-G solvation = -25500.126141 eV Core-core repulsion = 21482.373631 eV Total energy + Delta-G solvation = -4017.752510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13513 -40.46239 -39.83986 -38.36652 -37.53238 -36.19034 -34.51853 -33.35961 -32.38610 -31.79470 -28.78727 -28.29421 -27.18126 -26.25426 -24.94827 -23.70340 -22.79268 -22.40600 -21.15987 -19.81343 -19.11072 -18.38758 -17.93758 -17.83017 -17.18650 -16.98872 -16.87326 -16.55601 -16.18769 -15.81448 -15.67005 -15.51697 -15.35474 -15.05617 -14.74571 -14.54671 -14.47962 -14.30514 -14.10115 -14.03525 -13.05474 -13.01192 -12.91263 -12.74478 -12.54322 -12.49407 -12.41685 -12.29325 -12.19084 -11.92573 -11.83250 -11.27517 -11.18631 -10.97312 -10.89086 -10.80698 -10.06335 -9.78121 -8.97567 -8.50353 -6.22854 0.59284 0.62453 1.30274 1.35219 1.51053 1.74643 2.14149 2.27928 2.71588 2.83321 2.89752 3.08022 3.18374 3.85683 3.94902 3.96740 4.04913 4.09486 4.16692 4.27972 4.30663 4.37294 4.46298 4.50422 4.51666 4.54315 4.58738 4.59749 4.70505 4.72388 4.83272 4.85982 4.99198 5.09896 5.10941 5.26436 5.38230 5.49259 5.57334 5.74699 5.78101 5.80284 5.91734 6.24243 6.25693 6.64974 6.83872 7.37867 7.58756 8.61413 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.030335 B = 0.001628 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.818277 B =17195.178847 C =17277.394381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.428 6.428 3 C 0.206 3.794 4 O -0.413 6.413 5 C 0.063 3.937 6 C -0.114 4.114 7 C 0.123 3.877 8 N -0.718 5.718 9 C 0.509 3.491 10 O -0.582 6.582 11 C -0.079 4.079 12 C -0.139 4.139 13 C -0.065 4.065 14 C -0.239 4.239 15 C 0.117 3.883 16 O -0.247 6.247 17 C -0.401 4.401 18 H 0.079 0.921 19 C 0.010 3.990 20 N -0.923 5.923 21 Si 0.972 3.028 22 H -0.268 1.268 23 H -0.265 1.265 24 H -0.263 1.263 25 C -0.195 4.195 26 C -0.060 4.060 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.419 0.581 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.106 0.894 43 H 0.285 0.715 44 H 0.128 0.872 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.947 4.138 -25.554 35.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.349 6.349 3 C 0.092 3.908 4 O -0.334 6.334 5 C -0.013 4.013 6 C -0.152 4.152 7 C -0.001 4.001 8 N -0.373 5.373 9 C 0.297 3.703 10 O -0.461 6.461 11 C -0.118 4.118 12 C -0.140 4.140 13 C -0.083 4.083 14 C -0.259 4.259 15 C 0.068 3.932 16 O -0.154 6.154 17 C -0.477 4.477 18 H 0.097 0.903 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.794 3.206 22 H -0.193 1.193 23 H -0.189 1.189 24 H -0.187 1.187 25 C -0.214 4.214 26 C -0.078 4.078 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.257 0.743 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.146 0.854 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -24.200 3.338 -25.355 35.208 hybrid contribution 0.637 -0.117 0.441 0.784 sum -23.563 3.221 -24.913 34.442 Atomic orbital electron populations 1.22894 0.79466 1.03523 1.00985 1.87990 1.22150 1.30720 1.94018 1.24241 0.99709 0.82519 0.84283 1.87942 1.61178 1.62537 1.21745 1.22396 0.92881 0.97451 0.88622 1.21532 1.00157 1.01554 0.91967 1.21100 0.99269 0.96959 0.82801 1.45818 1.39993 1.42415 1.09030 1.21199 0.80143 0.82272 0.86678 1.90760 1.35612 1.34130 1.85637 1.20556 1.01157 1.01781 0.88321 1.19342 0.95628 0.98740 1.00247 1.20923 0.92938 0.99082 0.95360 1.21256 1.01749 1.00679 1.02176 1.19690 0.90521 0.93206 0.89745 1.83505 1.28360 1.49444 1.54140 1.20717 0.94537 1.13164 1.19270 0.90350 1.25290 0.94283 1.01466 0.97810 1.69733 1.10791 1.41699 1.34198 0.85200 0.79337 0.78199 0.77849 1.19284 1.18908 1.18687 1.20511 0.92017 1.04030 1.04799 1.20957 0.99164 0.94448 0.93185 0.92368 0.89036 0.93702 0.87111 0.87996 0.92097 0.93137 0.89712 0.89296 0.92530 0.92608 0.74296 0.84623 0.85421 0.84875 0.87605 0.90563 0.85448 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.89 113.37 1.23 1.49 16 2 O -0.43 -6.17 10.76 -126.21 -1.36 -7.53 16 3 C 0.21 2.13 7.07 113.37 0.80 2.93 16 4 O -0.41 -5.56 10.40 -126.21 -1.31 -6.88 16 5 C 0.06 0.77 5.82 71.98 0.42 1.19 16 6 C -0.11 -1.14 5.70 30.60 0.17 -0.97 16 7 C 0.12 1.87 5.67 86.38 0.49 2.36 16 8 N -0.72 -10.40 5.56 -463.04 -2.57 -12.97 16 9 C 0.51 11.73 7.82 87.66 0.69 12.42 16 10 O -0.58 -20.61 16.03 -3.05 -0.05 -20.66 16 11 C -0.08 -1.46 5.83 29.10 0.17 -1.29 16 12 C -0.14 -4.26 4.38 -19.83 -0.09 -4.35 16 13 C -0.06 -2.39 9.69 22.25 0.22 -2.18 16 14 C -0.24 -11.27 9.17 22.39 0.21 -11.06 16 15 C 0.12 5.85 6.65 22.58 0.15 6.00 16 16 O -0.25 -14.13 8.59 -22.72 -0.20 -14.33 16 17 C -0.40 -24.65 9.95 67.92 0.68 -23.98 16 18 H 0.08 5.06 5.44 -2.91 -0.02 5.05 16 19 C 0.01 0.58 5.49 84.83 0.47 1.05 16 20 N -0.92 -56.63 13.96 21.61 0.30 -56.33 16 21 Si 0.97 46.98 28.62 68.60 1.96 48.95 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 25 C -0.19 -7.96 9.99 22.39 0.22 -7.74 16 26 C -0.06 -1.94 9.69 22.25 0.22 -1.72 16 27 H 0.06 0.35 8.11 -2.39 -0.02 0.33 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.45 8.03 -2.39 -0.02 0.43 16 30 H 0.11 0.66 8.01 -2.39 -0.02 0.64 16 31 H 0.10 0.78 8.01 -2.39 -0.02 0.76 16 32 H 0.06 0.66 8.11 -2.39 -0.02 0.64 16 33 H 0.05 0.71 8.03 -2.39 -0.02 0.69 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.42 2.78 8.47 -92.70 -0.79 2.00 16 39 H 0.14 1.51 8.08 -2.39 -0.02 1.50 16 40 H 0.13 1.64 8.08 -2.38 -0.02 1.62 16 41 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.11 5.45 5.64 -2.91 -0.02 5.43 16 43 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 44 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 45 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -82.54 386.26 3.03 -79.52 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.21 Total: 16.07 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 6.04 Total: -25.85 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -2.27 Total: -69.30 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -2.91 Total: -49.39 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.96 Total: 48.95 kcal Total: -82.54 3.03 -79.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848170433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.266 kcal (2) G-P(sol) polarization free energy of solvation -82.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds