Wall clock time and date at job start Tue Mar 31 2020 14:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.29803 * 2 1 4 4 C 1.52803 * 109.30310 * 119.59033 * 2 1 3 5 5 C 1.53326 * 108.48302 * 171.27854 * 4 2 1 6 6 C 1.52821 * 108.43857 * 290.31538 * 5 4 2 7 7 C 1.50346 * 110.46725 * 50.73808 * 6 5 4 8 8 C 1.40072 * 118.66676 * 162.90321 * 7 6 5 9 9 N 1.38534 * 120.43579 * 359.84712 * 8 7 6 10 10 C 1.46495 * 119.99863 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.46855 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47136 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46827 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00613 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99582 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00300 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99711 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47148 * 90.00213 * 17 15 13 19 19 H 1.48506 * 109.46867 * 210.00014 * 17 15 13 20 20 H 1.48498 * 109.47100 * 329.99477 * 17 15 13 21 21 N 1.32822 * 119.13465 * 180.11299 * 8 7 6 22 22 C 1.31908 * 120.47571 * 359.44600 * 21 8 7 23 23 Cl 1.73603 * 119.14511 * 180.34318 * 22 21 8 24 24 N 1.31701 * 121.71280 * 0.37433 * 22 21 8 25 25 C 1.33146 * 121.27597 * 0.02562 * 24 22 21 26 26 H 1.08996 * 109.47139 * 300.40623 * 1 2 3 27 27 H 1.09002 * 109.47197 * 60.41763 * 1 2 3 28 28 H 1.09000 * 109.46861 * 180.40801 * 1 2 3 29 29 H 1.09003 * 109.46756 * 179.58820 * 3 2 1 30 30 H 1.09000 * 109.46923 * 299.58765 * 3 2 1 31 31 H 1.08998 * 109.47048 * 59.58911 * 3 2 1 32 32 H 1.09004 * 109.63465 * 51.57942 * 4 2 1 33 33 H 1.08996 * 109.63294 * 290.97967 * 4 2 1 34 34 H 1.09000 * 109.64028 * 170.63199 * 5 4 2 35 35 H 1.09004 * 109.81568 * 50.10103 * 5 4 2 36 36 H 1.09002 * 109.30410 * 290.43552 * 6 5 4 37 37 H 1.09000 * 109.30813 * 171.04469 * 6 5 4 38 38 H 0.97005 * 119.99516 * 359.97438 * 9 8 7 39 39 H 1.09003 * 109.47265 * 299.98872 * 10 9 8 40 40 H 1.08998 * 109.47397 * 59.99520 * 10 9 8 41 41 H 1.09008 * 109.47244 * 299.99693 * 11 10 9 42 42 H 1.08998 * 109.47222 * 59.99766 * 11 10 9 43 43 H 1.09002 * 109.46676 * 299.99555 * 12 11 10 44 44 H 1.08998 * 109.47225 * 59.99806 * 12 11 10 45 45 H 0.97001 * 120.00359 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0357 1.4441 0.0000 4 6 2.0351 -0.7121 1.2540 5 6 3.5524 -0.8958 1.1309 6 6 3.8272 -1.9287 0.0387 7 6 3.0813 -1.5760 -1.2181 8 6 3.4735 -2.1740 -2.4225 9 7 4.5302 -3.0694 -2.4500 10 6 4.9320 -3.6897 -3.7148 11 6 6.1144 -4.6291 -3.4692 12 6 6.5337 -5.2775 -4.7901 13 6 7.6979 -6.2032 -4.5479 14 1 8.0990 -6.3174 -3.5518 15 6 8.2511 -6.9045 -5.5984 16 7 7.7624 -6.7658 -6.8114 17 14 9.6947 -8.0514 -5.2984 18 1 9.1890 -9.4113 -4.9818 19 1 10.5420 -8.1096 -6.5165 20 1 10.5006 -7.5451 -4.1585 21 7 2.8225 -1.8673 -3.5389 22 6 1.8126 -1.0192 -3.5129 23 17 0.9803 -0.6499 -4.9910 24 7 1.4195 -0.4447 -2.3948 25 6 2.0279 -0.6962 -1.2375 26 1 -0.3633 0.5201 0.8863 27 1 -0.3634 0.5073 -0.8937 28 1 -0.3633 -1.0277 0.0073 29 1 3.1257 1.4473 0.0074 30 1 1.6768 1.9546 -0.8937 31 1 1.6648 1.9589 0.8863 32 1 1.5541 -1.6864 1.3409 33 1 1.8093 -0.1093 2.1336 34 1 3.9568 -1.2490 2.0794 35 1 4.0189 0.0526 0.8641 36 1 3.5070 -2.9119 0.3838 37 1 4.8963 -1.9547 -0.1720 38 1 5.0041 -3.2856 -1.6316 39 1 4.0956 -4.2571 -4.1231 40 1 5.2253 -2.9144 -4.4227 41 1 6.9508 -4.0615 -3.0611 42 1 5.8216 -5.4044 -2.7612 43 1 5.6972 -5.8452 -5.1977 44 1 6.8264 -4.5025 -5.4984 45 1 8.1518 -7.2589 -7.5505 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848662932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:03 Heat of formation + Delta-G solvation = 7.488343 kcal Electronic energy + Delta-G solvation = -24885.070249 eV Core-core repulsion = 21347.876539 eV Total energy + Delta-G solvation = -3537.193710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.58842 -38.39644 -37.23189 -36.42929 -34.52427 -33.30832 -32.50080 -31.51674 -29.91788 -27.54189 -26.89028 -26.63454 -24.20115 -23.97980 -22.58357 -21.36417 -20.52719 -19.63647 -17.82689 -17.43985 -16.32424 -15.92497 -15.56978 -15.25141 -15.05431 -14.67644 -14.59717 -14.47591 -14.09566 -13.84432 -13.75822 -13.21764 -12.62749 -12.45990 -12.34387 -12.08176 -11.92189 -11.87774 -11.81333 -11.48057 -11.43351 -11.32483 -11.11711 -11.09808 -10.91693 -10.77369 -10.62561 -10.60742 -10.40164 -9.88362 -9.56534 -9.47890 -9.19861 -9.12295 -8.40469 -8.03106 -6.04902 -4.08277 0.83665 1.26832 1.45311 3.12851 3.28496 3.35086 3.37708 3.65800 3.88162 4.32957 4.39195 4.41866 4.47040 4.55609 4.76902 4.88665 4.96183 5.09207 5.22541 5.24372 5.30957 5.40341 5.47765 5.52485 5.58210 5.61059 5.62176 5.68297 5.71462 5.73683 5.84287 5.89174 6.05898 6.09474 6.13879 6.19020 6.53167 6.57634 6.68496 6.92505 7.11325 7.53413 7.59497 7.71534 7.93375 8.10800 8.34154 8.98224 9.56121 11.06345 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002705 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.863069 B =10350.193706 C =11832.185013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.011 4.011 3 C -0.137 4.137 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.247 4.247 8 C 0.458 3.542 9 N -0.696 5.696 10 C 0.122 3.878 11 C -0.122 4.122 12 C 0.026 3.974 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.564 5.564 22 C 0.406 3.594 23 Cl 0.014 6.986 24 N -0.551 5.551 25 C 0.226 3.774 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.411 0.589 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.871 15.675 16.849 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.012 4.012 3 C -0.195 4.195 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.104 4.104 7 C -0.257 4.257 8 C 0.210 3.790 9 N -0.327 5.327 10 C 0.000 4.000 11 C -0.160 4.160 12 C -0.012 4.012 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 N -0.292 5.292 22 C 0.110 3.890 23 Cl 0.042 6.958 24 N -0.273 5.273 25 C 0.087 3.913 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.249 0.751 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.295 15.740 15.502 26.314 hybrid contribution 1.376 -1.051 0.619 1.839 sum -12.918 14.690 16.121 25.349 Atomic orbital electron populations 1.21784 0.92506 1.02134 1.02604 1.19389 0.96755 0.95244 0.89788 1.21900 1.01207 0.93716 1.02643 1.21708 0.95838 1.00884 0.96375 1.21611 0.96260 0.99497 0.98418 1.20171 0.99058 0.99696 0.91472 1.20391 1.03469 1.05825 0.96065 1.18380 0.86443 0.86630 0.87497 1.45042 1.31263 1.43582 1.12776 1.21739 0.98319 0.96243 0.83728 1.21912 0.94758 0.97012 1.02315 1.19009 0.96451 0.95400 0.90328 1.21188 1.15553 1.25167 0.94279 0.92675 1.25025 0.97239 0.96984 0.95165 1.69959 1.41582 1.42128 0.99526 0.86585 0.82475 0.81188 0.77694 1.20635 1.21167 1.19893 1.67335 1.11367 1.20591 1.29928 1.22372 0.88709 0.89489 0.88450 1.98420 1.75349 1.92697 1.29345 1.67750 1.33047 1.29022 0.97522 1.20648 0.88419 0.89963 0.92294 0.92294 0.90880 0.92888 0.92360 0.91750 0.91698 0.91240 0.90601 0.90888 0.91107 0.90494 0.90844 0.75067 0.91496 0.91503 0.92746 0.92741 0.96236 0.96229 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.15 37.16 0.30 -0.81 16 2 C -0.01 -0.09 0.72 -155.87 -0.11 -0.21 16 3 C -0.14 -1.08 8.23 37.16 0.31 -0.78 16 4 C -0.11 -0.77 4.69 -26.66 -0.13 -0.89 16 5 C -0.12 -0.84 5.93 -26.65 -0.16 -1.00 16 6 C -0.07 -0.58 4.94 -28.15 -0.14 -0.72 16 7 C -0.25 -3.00 5.75 -104.46 -0.60 -3.60 16 8 C 0.46 6.71 7.48 -154.76 -1.16 5.55 16 9 N -0.70 -9.78 5.59 -60.19 -0.34 -10.11 16 10 C 0.12 2.08 5.72 -4.04 -0.02 2.06 16 11 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 12 C 0.03 0.64 4.97 -27.88 -0.14 0.51 16 13 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 N -0.56 -9.26 9.67 -10.83 -0.10 -9.37 16 22 C 0.41 6.19 8.18 -92.14 -0.75 5.44 16 23 Cl 0.01 0.19 29.27 -51.86 -1.52 -1.33 16 24 N -0.55 -7.66 9.38 -8.16 -0.08 -7.74 16 25 C 0.23 2.73 5.41 -82.49 -0.45 2.28 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 6.45 -51.93 -0.33 0.13 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.08 0.41 8.12 -51.93 -0.42 -0.02 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.51 6.29 -51.93 -0.33 0.18 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.61 7.15 -51.93 -0.37 0.24 16 38 H 0.41 4.79 6.68 -40.82 -0.27 4.52 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -30.78 372.26 -11.47 -42.25 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.16 Total: -1.82 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.60 Total: -7.90 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.22 Total: -53.13 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -1.52 Total: -1.33 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.78 -11.47 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848662932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.735 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds