Wall clock time and date at job start Tue Mar 31 2020 14:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.29803 * 2 1 4 4 C 1.52803 * 109.30310 * 119.59033 * 2 1 3 5 5 C 1.53326 * 108.48302 * 171.27854 * 4 2 1 6 6 C 1.52821 * 108.43857 * 290.31538 * 5 4 2 7 7 C 1.50346 * 110.46725 * 50.73808 * 6 5 4 8 8 C 1.40072 * 118.66676 * 162.90321 * 7 6 5 9 9 N 1.38534 * 120.43579 * 359.84712 * 8 7 6 10 10 C 1.46495 * 119.99863 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.46855 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47136 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46827 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00613 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99582 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00300 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99711 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47148 * 90.00213 * 17 15 13 19 19 H 1.48506 * 109.46867 * 210.00014 * 17 15 13 20 20 H 1.48498 * 109.47100 * 329.99477 * 17 15 13 21 21 N 1.32822 * 119.13465 * 180.11299 * 8 7 6 22 22 C 1.31908 * 120.47571 * 359.44600 * 21 8 7 23 23 Cl 1.73603 * 119.14511 * 180.34318 * 22 21 8 24 24 N 1.31701 * 121.71280 * 0.37433 * 22 21 8 25 25 C 1.33146 * 121.27597 * 0.02562 * 24 22 21 26 26 H 1.08996 * 109.47139 * 300.40623 * 1 2 3 27 27 H 1.09002 * 109.47197 * 60.41763 * 1 2 3 28 28 H 1.09000 * 109.46861 * 180.40801 * 1 2 3 29 29 H 1.09003 * 109.46756 * 179.58820 * 3 2 1 30 30 H 1.09000 * 109.46923 * 299.58765 * 3 2 1 31 31 H 1.08998 * 109.47048 * 59.58911 * 3 2 1 32 32 H 1.09004 * 109.63465 * 51.57942 * 4 2 1 33 33 H 1.08996 * 109.63294 * 290.97967 * 4 2 1 34 34 H 1.09000 * 109.64028 * 170.63199 * 5 4 2 35 35 H 1.09004 * 109.81568 * 50.10103 * 5 4 2 36 36 H 1.09002 * 109.30410 * 290.43552 * 6 5 4 37 37 H 1.09000 * 109.30813 * 171.04469 * 6 5 4 38 38 H 0.97005 * 119.99516 * 359.97438 * 9 8 7 39 39 H 1.09003 * 109.47265 * 299.98872 * 10 9 8 40 40 H 1.08998 * 109.47397 * 59.99520 * 10 9 8 41 41 H 1.09008 * 109.47244 * 299.99693 * 11 10 9 42 42 H 1.08998 * 109.47222 * 59.99766 * 11 10 9 43 43 H 1.09002 * 109.46676 * 299.99555 * 12 11 10 44 44 H 1.08998 * 109.47225 * 59.99806 * 12 11 10 45 45 H 0.97001 * 120.00359 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0357 1.4441 0.0000 4 6 2.0351 -0.7121 1.2540 5 6 3.5524 -0.8958 1.1309 6 6 3.8272 -1.9287 0.0387 7 6 3.0813 -1.5760 -1.2181 8 6 3.4735 -2.1740 -2.4225 9 7 4.5302 -3.0694 -2.4500 10 6 4.9320 -3.6897 -3.7148 11 6 6.1144 -4.6291 -3.4692 12 6 6.5337 -5.2775 -4.7901 13 6 7.6979 -6.2032 -4.5479 14 1 8.0990 -6.3174 -3.5518 15 6 8.2511 -6.9045 -5.5984 16 7 7.7624 -6.7658 -6.8114 17 14 9.6947 -8.0514 -5.2984 18 1 9.1890 -9.4113 -4.9818 19 1 10.5420 -8.1096 -6.5165 20 1 10.5006 -7.5451 -4.1585 21 7 2.8225 -1.8673 -3.5389 22 6 1.8126 -1.0192 -3.5129 23 17 0.9803 -0.6499 -4.9910 24 7 1.4195 -0.4447 -2.3948 25 6 2.0279 -0.6962 -1.2375 26 1 -0.3633 0.5201 0.8863 27 1 -0.3634 0.5073 -0.8937 28 1 -0.3633 -1.0277 0.0073 29 1 3.1257 1.4473 0.0074 30 1 1.6768 1.9546 -0.8937 31 1 1.6648 1.9589 0.8863 32 1 1.5541 -1.6864 1.3409 33 1 1.8093 -0.1093 2.1336 34 1 3.9568 -1.2490 2.0794 35 1 4.0189 0.0526 0.8641 36 1 3.5070 -2.9119 0.3838 37 1 4.8963 -1.9547 -0.1720 38 1 5.0041 -3.2856 -1.6316 39 1 4.0956 -4.2571 -4.1231 40 1 5.2253 -2.9144 -4.4227 41 1 6.9508 -4.0615 -3.0611 42 1 5.8216 -5.4044 -2.7612 43 1 5.6972 -5.8452 -5.1977 44 1 6.8264 -4.5025 -5.4984 45 1 8.1518 -7.2589 -7.5505 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848662932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:02 Heat of formation + Delta-G solvation = -8.404771 kcal Electronic energy + Delta-G solvation = -24885.759426 eV Core-core repulsion = 21347.876539 eV Total energy + Delta-G solvation = -3537.882887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.57267 -39.22347 -38.39674 -37.55376 -35.99318 -34.68369 -33.65616 -32.93516 -31.09661 -28.41742 -28.16243 -27.54220 -25.53904 -24.98441 -24.01669 -22.31050 -21.99676 -20.53710 -19.00551 -18.51117 -18.24792 -16.93072 -16.67558 -16.49980 -16.20141 -16.03573 -15.87334 -15.53589 -15.08257 -14.56006 -14.45942 -14.30230 -14.05999 -13.90531 -13.73310 -13.16342 -13.00969 -12.77192 -12.65200 -12.58481 -12.55267 -12.47796 -12.41908 -12.38749 -12.15332 -12.02737 -11.77019 -11.61367 -11.51925 -11.35082 -11.21941 -11.13465 -10.56887 -10.54617 -10.23725 -9.13386 -8.20829 -6.32436 -0.20940 0.19831 0.36632 1.40730 1.41976 1.52880 1.97773 2.41044 2.59330 2.98218 3.13083 3.45250 3.59155 3.71934 3.88302 3.90930 4.13027 4.16931 4.19124 4.24509 4.43327 4.49595 4.53812 4.58990 4.81146 4.83135 4.91592 4.92267 4.95357 4.99264 5.05547 5.08178 5.13762 5.15988 5.22601 5.27058 5.39033 5.46679 5.48881 5.56053 5.62320 5.68454 5.82465 5.89928 6.21205 6.49684 6.84948 7.02740 7.37311 8.91279 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002705 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.863069 B =10350.193706 C =11832.185013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.011 4.011 3 C -0.134 4.134 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.069 4.069 7 C -0.237 4.237 8 C 0.438 3.562 9 N -0.689 5.689 10 C 0.142 3.858 11 C -0.103 4.103 12 C 0.026 3.974 13 C -0.541 4.541 14 H 0.066 0.934 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.260 1.260 21 N -0.595 5.595 22 C 0.386 3.614 23 Cl 0.017 6.983 24 N -0.552 5.552 25 C 0.215 3.785 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.424 0.576 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.067 0.933 43 H -0.008 1.008 44 H -0.008 1.008 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.261 15.987 20.425 29.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.012 4.012 3 C -0.191 4.191 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.107 4.107 7 C -0.247 4.247 8 C 0.192 3.808 9 N -0.323 5.323 10 C 0.018 3.982 11 C -0.140 4.140 12 C -0.011 4.011 13 C -0.579 4.579 14 H 0.084 0.916 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.184 1.184 21 N -0.324 5.324 22 C 0.090 3.910 23 Cl 0.044 6.956 24 N -0.275 5.275 25 C 0.076 3.924 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.265 0.735 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.698 16.073 19.121 28.488 hybrid contribution 1.105 -1.084 -0.497 1.626 sum -12.593 14.989 18.624 27.020 Atomic orbital electron populations 1.21760 0.92254 1.01727 1.02970 1.19581 0.96938 0.95654 0.89074 1.21889 1.01181 0.93028 1.03013 1.21736 0.95695 1.01036 0.95954 1.21634 0.96337 0.98857 0.98589 1.20337 0.98957 1.00938 0.90447 1.20772 1.03046 1.04402 0.96444 1.18667 0.86664 0.87249 0.88197 1.44681 1.31731 1.43849 1.12030 1.21226 0.96849 0.95223 0.84861 1.21603 0.95848 0.97451 0.99142 1.18905 0.95056 0.94412 0.92752 1.21673 1.16097 1.25340 0.94808 0.91563 1.26017 1.00351 0.98842 0.94845 1.70107 1.43350 1.43443 1.00611 0.85428 0.78714 0.78908 0.77889 1.19810 1.21051 1.18382 1.67250 1.12249 1.21501 1.31425 1.22534 0.89116 0.90147 0.89170 1.98406 1.75205 1.92668 1.29273 1.67835 1.33159 1.28664 0.97820 1.21382 0.88224 0.89926 0.92867 0.89737 0.92673 0.93697 0.92388 0.93547 0.89141 0.91359 0.88050 0.88562 0.91139 0.89399 0.90095 0.73503 0.93148 0.93160 0.91484 0.91469 0.98985 0.98970 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.15 71.98 0.59 -1.35 16 2 C -0.01 -0.18 0.72 -53.06 -0.04 -0.21 16 3 C -0.13 -1.80 8.23 71.98 0.59 -1.21 16 4 C -0.11 -1.09 4.69 30.64 0.14 -0.94 16 5 C -0.12 -1.19 5.93 30.64 0.18 -1.01 16 6 C -0.07 -1.02 4.94 29.68 0.15 -0.87 16 7 C -0.24 -5.46 5.75 -19.76 -0.11 -5.57 16 8 C 0.44 12.79 7.48 133.33 1.00 13.79 16 9 N -0.69 -19.03 5.59 -344.34 -1.93 -20.96 16 10 C 0.14 4.95 5.72 86.38 0.49 5.44 16 11 C -0.10 -3.90 5.27 30.60 0.16 -3.74 16 12 C 0.03 1.37 4.97 29.85 0.15 1.52 16 13 C -0.54 -30.06 9.11 25.60 0.23 -29.82 16 14 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 15 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 16 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 17 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 21 N -0.60 -20.14 9.67 -188.19 -1.82 -21.96 16 22 C 0.39 12.12 8.18 180.88 1.48 13.60 16 23 Cl 0.02 0.47 29.27 -2.72 -0.08 0.39 16 24 N -0.55 -15.46 9.38 -179.72 -1.69 -17.15 16 25 C 0.21 4.98 5.41 42.06 0.23 5.21 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 1.02 7.68 -2.39 -0.02 1.00 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.79 6.45 -2.39 -0.02 0.77 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.75 8.09 -2.38 -0.02 0.73 16 33 H 0.10 0.58 8.12 -2.39 -0.02 0.56 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.76 6.29 -2.38 -0.01 0.74 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.11 7.15 -2.39 -0.02 1.09 16 38 H 0.42 9.18 6.68 -92.70 -0.62 8.56 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -68.56 372.26 2.88 -65.68 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.37 Total: 10.03 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 5.70 Total: -4.88 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -5.15 Total: -116.88 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -0.08 Total: 0.39 kcal Total: -68.56 2.88 -65.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848662932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.279 kcal (2) G-P(sol) polarization free energy of solvation -68.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds