Wall clock time and date at job start Tue Mar 31 2020 14:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00061 * 2 1 4 4 C 1.53008 * 109.46713 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47265 * 66.52852 * 4 3 2 6 6 C 1.46905 * 110.99761 * 286.52565 * 5 4 3 7 7 C 1.50699 * 109.47409 * 301.58115 * 6 5 4 8 8 H 1.08000 * 119.99941 * 4.36117 * 7 6 5 9 9 C 1.37874 * 120.00161 * 184.36752 * 7 6 5 10 10 N 1.31516 * 120.00085 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99917 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47262 * 90.00214 * 11 9 7 13 13 H 1.48497 * 109.47033 * 210.00431 * 11 9 7 14 14 H 1.48504 * 109.47300 * 330.00393 * 11 9 7 15 15 C 1.46898 * 110.99721 * 162.57833 * 5 4 3 16 16 C 1.50706 * 109.47136 * 189.99647 * 15 5 4 17 17 C 1.35183 * 125.47504 * 90.01146 * 16 15 5 18 18 C 1.40280 * 107.20769 * 179.74554 * 17 16 15 19 19 C 1.38005 * 106.52762 * 0.35567 * 18 17 16 20 20 C 1.41524 * 126.11276 * 179.91262 * 19 18 17 21 21 C 1.35747 * 120.00548 * 131.69687 * 20 19 18 22 22 C 1.41295 * 120.00046 * 350.23258 * 21 20 19 23 23 O 1.21712 * 119.99863 * 353.43076 * 22 21 20 24 24 O 1.34994 * 119.99957 * 173.42595 * 22 21 20 25 25 C 1.42903 * 116.99698 * 180.02562 * 24 22 21 26 26 O 1.34000 * 125.47995 * 269.97796 * 16 15 5 27 27 H 1.09005 * 109.46875 * 300.00661 * 1 2 3 28 28 H 1.09005 * 109.47125 * 59.99720 * 1 2 3 29 29 H 1.08991 * 109.47877 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47292 * 60.00079 * 3 2 1 31 31 H 1.08999 * 109.46931 * 299.99189 * 3 2 1 32 32 H 1.09006 * 109.46816 * 306.52736 * 4 3 2 33 33 H 1.09001 * 109.46708 * 186.53176 * 4 3 2 34 34 H 1.08999 * 109.47273 * 61.58400 * 6 5 4 35 35 H 1.09005 * 109.46833 * 181.57788 * 6 5 4 36 36 H 0.96999 * 119.99812 * 179.97438 * 10 9 7 37 37 H 1.08996 * 109.47912 * 70.00041 * 15 5 4 38 38 H 1.08999 * 109.47203 * 309.99492 * 15 5 4 39 39 H 1.07995 * 126.39948 * 359.96560 * 17 16 15 40 40 H 1.08000 * 126.74259 * 180.22958 * 18 17 16 41 41 H 1.08010 * 119.99590 * 311.97292 * 20 19 18 42 42 H 1.08006 * 120.00235 * 170.22900 * 21 20 19 43 43 H 1.09002 * 109.47445 * 300.00217 * 25 24 22 44 44 H 1.09005 * 109.47147 * 60.00472 * 25 24 22 45 45 H 1.09000 * 109.47258 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9796 0.5961 -1.2713 6 6 3.6728 -0.8396 -1.3222 7 6 4.3453 -1.5383 -0.1687 8 1 4.8824 -0.9639 0.5716 9 6 4.2751 -2.9108 -0.0585 10 7 4.8616 -3.5205 0.9485 11 14 3.3457 -3.9043 -1.3386 12 1 4.2710 -4.2884 -2.4347 13 1 2.7905 -5.1286 -0.7076 14 1 2.2366 -3.0857 -1.8911 15 6 5.4121 0.8364 -1.4904 16 6 5.7781 0.4413 -2.8980 17 6 5.7449 1.2569 -3.9755 18 6 6.1635 0.5014 -5.0809 19 6 6.4292 -0.7685 -4.6105 20 6 6.8787 -1.8666 -5.3819 21 6 7.9318 -2.6097 -4.9558 22 6 8.7077 -2.1719 -3.8591 23 8 8.5085 -1.0743 -3.3724 24 8 9.6698 -2.9711 -3.3512 25 6 10.4152 -2.4647 -2.2421 26 8 6.1895 -0.7746 -3.2824 27 1 -0.3633 0.5140 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 1.6887 1.8463 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8497 0.5458 0.8250 33 1 3.9784 2.1736 0.1163 34 1 2.5944 -0.9834 -1.2552 35 1 4.0371 -1.2559 -2.2615 36 1 4.8118 -4.4861 1.0262 37 1 5.9924 0.2429 -0.7840 38 1 5.6301 1.8939 -1.3416 39 1 5.4541 2.2970 -3.9833 40 1 6.2573 0.8453 -6.1004 41 1 6.3866 -2.1107 -6.3119 42 1 8.1766 -3.5356 -5.4551 43 1 10.9224 -1.5453 -2.5347 44 1 9.7381 -2.2582 -1.4132 45 1 11.1539 -3.2041 -1.9328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848885277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:37 Heat of formation + Delta-G solvation = -69.962651 kcal Electronic energy + Delta-G solvation = -28773.515866 eV Core-core repulsion = 24759.961713 eV Total energy + Delta-G solvation = -4013.554153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.00925 -40.19569 -37.89513 -36.61533 -36.08761 -33.99157 -32.54051 -32.18919 -30.42033 -28.98931 -28.01757 -26.90922 -25.79757 -24.69768 -23.10927 -22.35255 -21.26209 -20.59731 -19.54387 -19.24647 -17.83346 -17.04010 -16.66762 -16.17841 -16.09343 -15.73930 -15.38338 -15.16954 -14.48054 -14.27228 -14.13269 -13.95674 -13.83702 -13.64713 -13.10857 -12.96961 -12.46255 -12.36363 -12.27665 -12.20840 -11.88159 -11.73813 -11.38675 -11.25707 -11.16290 -10.91827 -10.67645 -10.59586 -10.48400 -10.29754 -9.94424 -9.88125 -9.81404 -9.39013 -9.29267 -8.99889 -8.38596 -7.59199 -7.17769 -5.95230 -3.90170 0.64699 2.33467 3.01567 3.15619 3.25488 3.38636 3.44183 3.51699 3.64972 4.39643 4.55384 4.88640 4.99767 5.10680 5.31013 5.33231 5.37972 5.41499 5.42195 5.46307 5.57021 5.68228 5.71539 5.77093 5.82667 5.88300 5.91594 5.99277 6.03032 6.06100 6.18762 6.23483 6.30234 6.46313 6.59470 6.67843 6.74941 6.99775 7.06559 7.45502 7.67621 7.77737 7.80287 8.03862 8.07572 8.12088 8.57358 9.04805 9.70155 11.18342 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.004931 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.365506 B = 5676.765909 C = 6639.642584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.073 3.927 4 C 0.053 3.947 5 N -0.527 5.527 6 C 0.147 3.853 7 C -0.529 4.529 8 H 0.071 0.929 9 C 0.075 3.925 10 N -0.905 5.905 11 Si 0.873 3.127 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.263 1.263 15 C 0.125 3.875 16 C 0.063 3.937 17 C -0.223 4.223 18 C -0.169 4.169 19 C -0.028 4.028 20 C 0.037 3.963 21 C -0.200 4.200 22 C 0.488 3.512 23 O -0.485 6.485 24 O -0.358 6.358 25 C 0.037 3.963 26 O -0.125 6.125 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.260 0.740 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.147 0.853 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 6.975 -10.455 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C -0.004 4.004 4 C -0.075 4.075 5 N -0.251 5.251 6 C 0.021 3.979 7 C -0.568 4.568 8 H 0.089 0.911 9 C -0.126 4.126 10 N -0.545 5.545 11 Si 0.700 3.300 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.187 1.187 15 C -0.003 4.003 16 C 0.009 3.991 17 C -0.243 4.243 18 C -0.188 4.188 19 C -0.078 4.078 20 C 0.019 3.981 21 C -0.219 4.219 22 C 0.334 3.666 23 O -0.374 6.374 24 O -0.275 6.275 25 C -0.058 4.058 26 O -0.018 6.018 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.165 0.835 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.561 6.934 -10.378 12.741 hybrid contribution -0.087 -0.748 0.080 0.757 sum 2.475 6.186 -10.297 12.265 Atomic orbital electron populations 1.22666 0.83297 1.02095 0.98773 1.88288 1.17594 1.26937 1.94815 1.22465 0.94194 0.85051 0.98668 1.22056 0.93060 0.98787 0.93565 1.62620 1.12729 1.17988 1.31793 1.20466 0.98766 0.82682 0.96017 1.21493 1.33326 0.92403 1.09572 0.91124 1.24812 0.94841 0.97785 0.95155 1.69924 1.44677 1.09148 1.30708 0.86878 0.81082 0.79785 0.82223 1.20546 1.21601 1.18708 1.20518 0.91635 0.99681 0.88420 1.22565 0.97681 0.81828 0.96977 1.21251 1.09943 1.01210 0.91858 1.21987 1.04344 0.92694 0.99788 1.19458 1.09436 0.96434 0.82496 1.20744 0.91878 0.88984 0.96525 1.21474 0.98341 1.03026 0.99097 1.19944 0.79513 0.83688 0.83440 1.90957 1.66348 1.21478 1.58582 1.86183 1.46890 1.47344 1.47053 1.22836 0.95346 1.00023 0.87548 1.84289 1.63200 1.32424 1.21927 0.94997 0.94897 0.90306 0.94112 0.93575 0.91275 0.91373 0.92138 0.96487 0.93061 0.91476 0.89589 0.83843 0.83842 0.82377 0.83478 0.92568 0.91675 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.36 -7.20 7.74 -35.23 -0.27 -7.47 16 3 C 0.07 1.25 6.24 37.16 0.23 1.48 16 4 C 0.05 1.00 5.35 -3.82 -0.02 0.98 16 5 N -0.53 -11.09 4.65 -237.51 -1.10 -12.20 16 6 C 0.15 3.69 3.65 -4.97 -0.02 3.68 16 7 C -0.53 -15.16 7.89 -34.44 -0.27 -15.43 16 8 H 0.07 2.17 6.20 -52.49 -0.33 1.84 16 9 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 10 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 11 Si 0.87 22.93 27.38 -169.99 -4.65 18.27 16 12 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 14 H -0.26 -6.70 6.67 56.52 0.38 -6.32 16 15 C 0.13 2.51 5.33 -4.97 -0.03 2.48 16 16 C 0.06 1.29 5.88 -35.39 -0.21 1.08 16 17 C -0.22 -3.86 10.76 -39.90 -0.43 -4.28 16 18 C -0.17 -2.71 10.90 -38.90 -0.42 -3.13 16 19 C -0.03 -0.50 4.95 -38.42 -0.19 -0.69 16 20 C 0.04 0.52 9.95 -39.22 -0.39 0.13 16 21 C -0.20 -2.86 9.99 -39.31 -0.39 -3.26 16 22 C 0.49 8.58 7.51 31.89 0.24 8.82 16 23 O -0.48 -9.94 12.64 -27.35 -0.35 -10.28 16 24 O -0.36 -5.77 10.46 -41.30 -0.43 -6.21 16 25 C 0.04 0.51 10.45 101.05 1.06 1.56 16 26 O -0.13 -2.78 7.80 -19.06 -0.15 -2.93 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.52 5.95 -51.93 -0.31 1.22 16 33 H 0.07 1.05 7.78 -51.93 -0.40 0.64 16 34 H 0.06 1.59 4.84 -51.93 -0.25 1.34 16 35 H 0.02 0.46 5.71 -51.93 -0.30 0.16 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.07 1.55 6.77 -51.93 -0.35 1.20 16 38 H 0.09 1.42 7.85 -51.93 -0.41 1.01 16 39 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 42 H 0.15 1.56 8.06 -52.48 -0.42 1.13 16 43 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 44 H 0.06 1.03 8.13 -51.93 -0.42 0.60 16 45 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -36.38 371.57 -6.99 -43.37 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.58 Total: 2.45 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 0.17 Total: -2.87 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: -0.33 Total: -39.94 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -1.20 Total: -26.89 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.65 Total: 18.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.38 -6.99 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848885277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.590 kcal (2) G-P(sol) polarization free energy of solvation -36.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds