Wall clock time and date at job start Tue Mar 31 2020 14:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00100 * 2 1 4 4 O 1.42903 * 109.47142 * 84.52913 * 3 2 1 5 5 C 1.42904 * 113.99822 * 287.26733 * 4 3 2 6 6 C 1.50700 * 109.47485 * 204.53066 * 3 2 1 7 7 C 1.35125 * 125.62186 * 179.97438 * 6 3 2 8 8 C 1.40367 * 107.11797 * 179.97438 * 7 6 3 9 9 C 1.36544 * 106.70533 * 0.02562 * 8 7 6 10 10 C 1.46655 * 125.98651 * 179.97438 * 9 8 7 11 11 O 1.21702 * 120.00012 * 6.77289 * 10 9 8 12 12 N 1.34772 * 120.00367 * 186.78006 * 10 9 8 13 13 C 1.46929 * 120.62659 * 355.00208 * 12 10 9 14 14 C 1.53194 * 108.89049 * 126.46367 * 13 12 10 15 15 C 1.53039 * 109.31367 * 54.56503 * 14 13 12 16 16 C 1.53037 * 109.53713 * 298.62948 * 15 14 13 17 17 H 1.08996 * 109.49935 * 301.38946 * 16 15 14 18 18 C 1.50702 * 109.49951 * 181.31458 * 16 15 14 19 19 H 1.08000 * 119.99809 * 0.02562 * 18 16 15 20 20 C 1.37872 * 120.00057 * 180.02562 * 18 16 15 21 21 N 1.31517 * 120.00433 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99958 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47179 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47400 * 120.00165 * 22 20 18 25 25 H 1.48503 * 109.46746 * 240.00130 * 22 20 18 26 26 C 1.46962 * 120.65897 * 174.81705 * 12 10 9 27 27 O 1.33933 * 125.61229 * 0.24060 * 6 3 2 28 28 H 1.08996 * 109.46836 * 185.95025 * 1 2 3 29 29 H 1.08998 * 109.46940 * 305.95110 * 1 2 3 30 30 H 1.08997 * 109.47078 * 65.94916 * 1 2 3 31 31 H 1.09002 * 109.47032 * 324.52815 * 3 2 1 32 32 H 1.09001 * 109.47277 * 313.21107 * 5 4 3 33 33 H 1.09002 * 109.46917 * 73.21084 * 5 4 3 34 34 H 1.08998 * 109.46550 * 193.20783 * 5 4 3 35 35 H 1.08003 * 126.43643 * 359.97438 * 7 6 3 36 36 H 1.07993 * 126.64642 * 179.97438 * 8 7 6 37 37 H 1.08998 * 109.58811 * 6.60176 * 13 12 10 38 38 H 1.09002 * 109.58429 * 246.31977 * 13 12 10 39 39 H 1.09004 * 109.49261 * 174.51158 * 14 13 12 40 40 H 1.08994 * 109.49698 * 294.60528 * 14 13 12 41 41 H 1.08999 * 109.46157 * 58.65430 * 15 14 13 42 42 H 1.09000 * 109.45719 * 178.62805 * 15 14 13 43 43 H 0.96998 * 120.00567 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.46360 * 113.74668 * 26 12 10 45 45 H 1.08997 * 109.70768 * 353.47147 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 2.0867 1.7928 1.3412 5 6 0.8242 2.1671 1.8964 6 6 3.3954 1.2387 -0.5899 7 6 4.2355 2.2854 -0.7463 8 6 5.4119 1.7877 -1.3283 9 6 5.2274 0.4457 -1.5001 10 6 6.1972 -0.4904 -2.0779 11 8 7.3241 -0.1138 -2.3412 12 7 5.8406 -1.7679 -2.3174 13 6 4.5213 -2.2665 -1.9055 14 6 3.8273 -2.8939 -3.1185 15 6 4.7399 -3.9605 -3.7282 16 6 6.0426 -3.3106 -4.1998 17 1 5.8181 -2.5351 -4.9321 18 6 6.9272 -4.3558 -4.8292 19 1 6.5937 -5.3814 -4.8875 20 6 8.1621 -4.0029 -5.3304 21 7 8.5685 -2.7542 -5.2589 22 14 9.2583 -5.2985 -6.1111 23 1 8.5753 -6.6163 -6.0675 24 1 9.5329 -4.9292 -7.5229 25 1 10.5384 -5.3800 -5.3627 26 6 6.7618 -2.6879 -2.9991 27 8 3.9947 0.1328 -1.0500 28 1 -0.3633 -1.0221 0.1065 29 1 -0.3633 0.6033 0.8319 30 1 -0.3633 0.4188 -0.9384 31 1 1.3935 1.9778 -0.5964 32 1 0.2782 2.7784 1.1779 33 1 0.2471 1.2707 2.1235 34 1 0.9845 2.7376 2.8112 35 1 4.0387 3.3120 -0.4747 36 1 6.2919 2.3561 -1.5903 37 1 3.9199 -1.4397 -1.5275 38 1 4.6420 -3.0174 -1.1247 39 1 2.8902 -3.3534 -2.8041 40 1 3.6235 -2.1220 -3.8606 41 1 4.9633 -4.7191 -2.9781 42 1 4.2383 -4.4255 -4.5769 43 1 9.4372 -2.5058 -5.6118 44 1 7.0675 -3.4738 -2.3083 45 1 7.6401 -2.1413 -3.3423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857302483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:05 Heat of formation + Delta-G solvation = -112.217271 kcal Electronic energy + Delta-G solvation = -28402.452850 eV Core-core repulsion = 24387.066400 eV Total energy + Delta-G solvation = -4015.386451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.92301 -40.89022 -40.16223 -38.49252 -37.11690 -35.42493 -34.30379 -33.52591 -32.24369 -31.52305 -29.11726 -27.27034 -26.92632 -26.75873 -25.51049 -23.64211 -23.06881 -22.56875 -21.53554 -20.48012 -18.89597 -18.56787 -18.35700 -18.09981 -17.86179 -17.29007 -17.01095 -16.44816 -15.84943 -15.79304 -15.40659 -15.29284 -15.22912 -14.60487 -14.56494 -14.54540 -14.30024 -14.17036 -14.09379 -13.79463 -13.46570 -13.41203 -12.99046 -12.91240 -12.61405 -12.34470 -12.33014 -12.21558 -11.77545 -11.64885 -11.41519 -11.19065 -11.06346 -11.01832 -10.84145 -10.80513 -10.55027 -9.87170 -9.46035 -8.12154 -6.29154 -0.13495 1.10780 1.32991 1.40871 1.42119 1.54302 2.01013 2.14088 2.39880 2.42515 2.92649 3.16300 3.39325 3.57257 3.81475 3.82797 4.06990 4.10857 4.24950 4.27656 4.38113 4.42261 4.48981 4.52443 4.57332 4.57522 4.70929 4.76346 4.79454 4.80960 4.97695 5.01733 5.04452 5.20520 5.23106 5.26487 5.29828 5.48739 5.57972 5.73311 5.84478 5.91738 5.94046 6.00737 6.29673 6.45866 6.82565 7.01579 7.41106 8.92258 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.003155 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.571952 B = 8873.837698 C = 9833.228302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.412 6.412 3 C 0.329 3.671 4 O -0.406 6.406 5 C 0.012 3.988 6 C -0.004 4.004 7 C -0.171 4.171 8 C -0.124 4.124 9 C -0.081 4.081 10 C 0.580 3.420 11 O -0.567 6.567 12 N -0.597 5.597 13 C 0.089 3.911 14 C -0.120 4.120 15 C -0.105 4.105 16 C 0.039 3.961 17 H -0.011 1.011 18 C -0.534 4.534 19 H 0.065 0.935 20 C 0.009 3.991 21 N -0.916 5.916 22 Si 0.961 3.039 23 H -0.260 1.260 24 H -0.282 1.282 25 H -0.283 1.283 26 C 0.125 3.875 27 O -0.141 6.141 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.195 0.805 36 H 0.168 0.832 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.261 0.739 44 H 0.042 0.958 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.655 10.785 13.657 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.333 6.333 3 C 0.234 3.766 4 O -0.327 6.327 5 C -0.082 4.082 6 C -0.055 4.055 7 C -0.189 4.189 8 C -0.145 4.145 9 C -0.133 4.133 10 C 0.368 3.632 11 O -0.449 6.449 12 N -0.327 5.327 13 C -0.032 4.032 14 C -0.158 4.158 15 C -0.142 4.142 16 C 0.020 3.980 17 H 0.008 0.992 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.191 4.191 21 N -0.555 5.555 22 Si 0.786 3.214 23 H -0.184 1.184 24 H -0.208 1.208 25 H -0.209 1.209 26 C 0.003 3.997 27 O -0.038 6.038 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.212 0.788 36 H 0.185 0.815 37 H 0.133 0.867 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.787 10.582 13.562 26.982 hybrid contribution 0.910 -0.322 -0.746 1.220 sum -19.878 10.260 12.815 25.780 Atomic orbital electron populations 1.23457 0.78130 1.05167 1.02254 1.88101 1.22788 1.28431 1.93980 1.21246 0.85833 0.84932 0.84577 1.88079 1.33060 1.82514 1.29057 1.23352 0.84268 1.00402 1.00208 1.22576 0.96085 0.85283 1.01576 1.21754 0.91811 1.01515 1.03860 1.22198 1.00818 0.91988 0.99496 1.22052 0.85353 0.96053 1.09865 1.17224 0.85745 0.81729 0.78478 1.90838 1.20898 1.77719 1.55428 1.48505 1.18147 1.09914 1.56129 1.22486 0.82339 1.00741 0.97597 1.21861 0.99102 0.98305 0.96570 1.21534 0.95463 0.97450 0.99780 1.18912 0.93075 0.94292 0.91731 0.99241 1.21514 1.01895 0.95412 1.38375 0.91709 1.25925 0.99613 0.97215 0.96312 1.70079 1.20589 1.18337 1.46517 0.85460 0.78486 0.79580 0.77863 1.18388 1.20763 1.20873 1.21898 0.93753 0.90788 0.93233 1.84214 1.24461 1.34062 1.61035 0.88233 0.90987 0.91915 0.85987 0.91007 0.92278 0.87795 0.78812 0.81462 0.86701 0.90439 0.87854 0.93190 0.92295 0.92325 0.93000 0.94013 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 10.65 113.37 1.21 1.26 16 2 O -0.41 -8.31 10.37 -121.02 -1.25 -9.57 16 3 C 0.33 6.00 3.29 71.24 0.23 6.23 16 4 O -0.41 -7.27 10.58 -126.21 -1.34 -8.61 16 5 C 0.01 0.10 9.82 113.37 1.11 1.22 16 6 C 0.00 -0.09 6.72 24.97 0.17 0.08 16 7 C -0.17 -3.95 10.76 22.07 0.24 -3.71 16 8 C -0.12 -3.80 10.63 22.39 0.24 -3.56 16 9 C -0.08 -2.99 6.86 24.07 0.17 -2.83 16 10 C 0.58 26.79 7.66 86.44 0.66 27.45 16 11 O -0.57 -30.65 16.31 -4.35 -0.07 -30.72 16 12 N -0.60 -26.97 2.98 -823.54 -2.45 -29.42 16 13 C 0.09 3.16 6.32 86.36 0.55 3.71 16 14 C -0.12 -4.06 6.08 30.67 0.19 -3.87 16 15 C -0.10 -4.25 5.11 30.62 0.16 -4.09 16 16 C 0.04 2.04 2.25 -11.46 -0.03 2.02 16 17 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 18 C -0.53 -29.85 8.56 25.60 0.22 -29.63 16 19 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 20 C 0.01 0.49 5.30 84.65 0.45 0.94 16 21 N -0.92 -56.42 11.40 21.45 0.24 -56.17 16 22 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 26 C 0.12 6.56 5.38 86.36 0.46 7.03 16 27 O -0.14 -4.50 6.83 7.65 0.05 -4.45 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.45 4.59 -2.39 -0.01 0.44 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.12 1.32 7.64 -2.39 -0.02 1.30 16 32 H 0.07 0.25 7.88 -2.39 -0.02 0.23 16 33 H 0.06 0.43 5.94 -2.39 -0.01 0.42 16 34 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.17 4.84 8.06 -2.91 -0.02 4.82 16 37 H 0.12 3.84 3.73 -58.76 -0.22 3.63 16 38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 43 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.08 5.05 5.17 -2.39 -0.01 5.04 16 Total: -1.00 -77.51 363.26 4.02 -73.49 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.79 Total: 16.38 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 6.02 Total: 2.24 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -2.21 Total: -85.59 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -2.61 Total: -53.35 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -77.51 4.02 -73.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857302483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.724 kcal (2) G-P(sol) polarization free energy of solvation -77.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds