Wall clock time and date at job start Tue Mar 31 2020 14:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99502 * 2 1 4 4 C 1.53005 * 109.46821 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47324 * 65.00329 * 4 3 2 6 6 C 1.46497 * 119.99571 * 270.00024 * 5 4 3 7 7 C 1.50705 * 109.47142 * 269.99736 * 6 5 4 8 8 H 1.07999 * 119.99865 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00087 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00195 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00170 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46837 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47541 * 119.99314 * 11 9 7 14 14 H 1.48502 * 109.47175 * 240.00024 * 11 9 7 15 15 C 1.34771 * 120.00342 * 89.99327 * 5 4 3 16 16 O 1.21512 * 119.99760 * 0.02562 * 15 5 4 17 17 O 1.34641 * 120.00348 * 179.97438 * 15 5 4 18 18 C 1.45193 * 117.00047 * 180.02562 * 17 15 5 19 19 C 1.50703 * 109.46904 * 180.02562 * 18 17 15 20 20 C 1.38290 * 119.97179 * 269.97863 * 19 18 17 21 21 C 1.38246 * 120.11140 * 180.02562 * 20 19 18 22 22 C 1.38169 * 120.05594 * 359.67998 * 21 20 19 23 23 C 1.38709 * 119.93896 * 0.61802 * 22 21 20 24 24 O 1.35905 * 120.05570 * 179.67527 * 23 22 21 25 25 C 1.42901 * 116.99604 * 359.72908 * 24 23 22 26 26 C 1.38119 * 119.97324 * 90.00388 * 19 18 17 27 27 H 1.08995 * 109.47334 * 299.99615 * 1 2 3 28 28 H 1.09003 * 109.47415 * 60.00530 * 1 2 3 29 29 H 1.09003 * 109.46946 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47298 * 60.00564 * 3 2 1 31 31 H 1.09000 * 109.47206 * 300.00058 * 3 2 1 32 32 H 1.08997 * 109.46925 * 305.00197 * 4 3 2 33 33 H 1.09001 * 109.46817 * 185.00039 * 4 3 2 34 34 H 1.09004 * 109.47702 * 29.99901 * 6 5 4 35 35 H 1.09008 * 109.47111 * 149.99714 * 6 5 4 36 36 H 0.96996 * 120.00293 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46821 * 60.01308 * 18 17 15 38 38 H 1.08994 * 109.47673 * 300.00501 * 18 17 15 39 39 H 1.08001 * 119.94690 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.97049 * 179.97438 * 21 20 19 41 41 H 1.07997 * 120.02760 * 180.29730 * 22 21 20 42 42 H 1.08996 * 109.47352 * 299.99771 * 25 24 23 43 43 H 1.08999 * 109.47144 * 59.99795 * 25 24 23 44 44 H 1.08995 * 109.47253 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.02943 * 0.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.1052 -0.8918 -1.3428 7 6 5.5011 -1.2975 -0.9449 8 1 6.2196 -0.5457 -0.6537 9 6 5.8607 -2.6285 -0.9527 10 7 4.9856 -3.5442 -1.3068 11 14 7.5906 -3.1315 -0.4589 12 1 8.3761 -1.9216 -0.1058 13 1 7.5263 -4.0400 0.7140 14 1 8.2451 -3.8324 -1.5928 15 6 4.2614 1.3339 -2.3218 16 8 4.1542 2.5420 -2.2470 17 8 4.6665 0.7640 -3.4724 18 6 4.9573 1.6539 -4.5822 19 6 5.3921 0.8430 -5.7757 20 6 6.7309 0.5503 -5.9614 21 6 7.1331 -0.1929 -7.0555 22 6 6.1971 -0.6508 -7.9629 23 6 4.8544 -0.3533 -7.7821 24 8 3.9325 -0.7969 -8.6768 25 6 4.4173 -1.5596 -9.7837 26 6 4.4533 0.3932 -6.6834 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9784 2.1766 0.0889 34 1 3.3853 -1.3628 -0.6734 35 1 3.9120 -1.2112 -2.3669 36 1 5.2385 -4.4805 -1.3119 37 1 5.7555 2.3398 -4.2983 38 1 4.0628 2.2225 -4.8361 39 1 7.4635 0.9029 -5.2505 40 1 8.1792 -0.4198 -7.1986 41 1 6.5112 -1.2354 -8.8149 42 1 5.1190 -0.9571 -10.3605 43 1 4.9223 -2.4529 -9.4160 44 1 3.5806 -1.8509 -10.4185 45 1 3.4079 0.6227 -6.5384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858944620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:24 Heat of formation + Delta-G solvation = -131.100940 kcal Electronic energy + Delta-G solvation = -27638.349635 eV Core-core repulsion = 23622.144327 eV Total energy + Delta-G solvation = -4016.205308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18459 -39.66383 -37.84148 -37.40553 -35.92203 -34.79163 -32.50108 -31.84769 -30.41713 -29.70306 -27.46427 -27.02069 -26.26881 -25.63062 -22.86124 -22.74948 -22.48450 -21.05021 -19.67734 -17.89489 -17.18809 -16.57306 -16.41215 -16.28235 -15.97613 -15.82403 -15.76972 -15.52735 -15.29847 -14.66560 -14.37494 -14.20993 -13.76323 -13.66995 -13.31208 -12.81498 -12.72278 -12.38729 -12.21704 -12.01371 -11.84324 -11.72708 -11.46271 -11.42727 -11.33077 -11.08597 -10.86473 -10.82407 -10.76455 -10.52623 -10.06097 -10.03838 -9.72478 -9.60372 -9.32037 -8.86968 -8.38762 -8.15340 -7.72385 -6.00281 -4.05162 1.22946 1.52508 2.99981 3.24832 3.31208 3.38556 3.43064 3.61539 3.88666 4.18078 4.44980 4.69066 4.78461 4.96707 5.00032 5.03834 5.14091 5.28510 5.33633 5.34000 5.40684 5.40903 5.50353 5.52970 5.65137 5.67187 5.69802 5.71088 5.76667 5.89067 6.02318 6.06641 6.30321 6.35196 6.46756 6.66469 6.76151 6.84140 7.04856 7.38986 7.49595 7.54282 7.67603 7.94493 8.26384 8.38285 8.94625 9.17792 9.59672 11.07450 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008774 B = 0.004187 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.638384 B = 6686.142359 C = 8206.953353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.045 3.955 4 C 0.138 3.862 5 N -0.570 5.570 6 C 0.245 3.755 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.891 5.891 11 Si 0.894 3.106 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.649 3.351 16 O -0.611 6.611 17 O -0.341 6.341 18 C 0.127 3.873 19 C -0.049 4.049 20 C -0.125 4.125 21 C -0.085 4.085 22 C -0.201 4.201 23 C 0.120 3.880 24 O -0.318 6.318 25 C 0.028 3.972 26 C -0.123 4.123 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.098 0.902 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 6.911 -10.498 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.033 4.033 4 C 0.015 3.985 5 N -0.307 5.307 6 C 0.126 3.874 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.722 3.278 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.404 3.596 16 O -0.505 6.505 17 O -0.255 6.255 18 C 0.051 3.949 19 C -0.050 4.050 20 C -0.143 4.143 21 C -0.103 4.103 22 C -0.220 4.220 23 C 0.075 3.925 24 O -0.232 6.232 25 C -0.067 4.067 26 C -0.142 4.142 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.676 6.898 -10.562 12.896 hybrid contribution 0.957 -0.363 0.068 1.026 sum -1.719 6.535 -10.493 12.481 Atomic orbital electron populations 1.22682 0.82138 1.02444 0.99129 1.88074 1.18694 1.27296 1.95196 1.23065 0.95203 0.85075 0.99909 1.21360 0.91107 0.99569 0.86446 1.47074 1.65689 1.09810 1.08095 1.19476 0.97203 0.71724 0.99013 1.21524 0.97337 0.92349 1.45663 0.92408 1.24889 0.97298 0.96365 0.95229 1.69951 1.34190 1.00957 1.47882 0.86510 0.84659 0.78533 0.78123 1.19796 1.20974 1.21006 1.18076 0.76751 0.83669 0.81148 1.90865 1.61614 1.13405 1.84639 1.86502 1.79955 1.39192 1.19809 1.21532 1.01098 0.90101 0.82127 1.19324 0.93227 0.98279 0.94128 1.21033 0.95468 0.99751 0.98043 1.20899 0.99253 0.96403 0.93707 1.21234 0.92338 1.05742 1.02642 1.18909 0.87990 0.95230 0.90381 1.86068 1.34267 1.67925 1.34910 1.23027 1.01321 0.94868 0.87470 1.20295 1.00283 1.00208 0.93428 0.94707 0.94665 0.89835 0.92916 0.93327 0.88800 0.89190 0.93169 0.94228 0.92855 0.90482 0.90800 0.85411 0.85567 0.85564 0.92835 0.92587 0.88387 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.84 9.53 -35.23 -0.34 -7.18 16 3 C 0.05 0.75 6.28 37.16 0.23 0.98 16 4 C 0.14 2.59 5.81 -4.04 -0.02 2.57 16 5 N -0.57 -12.95 2.42 -180.86 -0.44 -13.39 16 6 C 0.24 6.41 4.99 -5.19 -0.03 6.38 16 7 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 11 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.65 14.72 8.39 54.05 0.45 15.18 16 16 O -0.61 -13.87 15.71 -19.28 -0.30 -14.17 16 17 O -0.34 -7.53 9.03 -40.33 -0.36 -7.89 16 18 C 0.13 2.18 5.60 36.01 0.20 2.38 16 19 C -0.05 -0.79 5.52 -104.64 -0.58 -1.37 16 20 C -0.12 -1.85 9.70 -39.56 -0.38 -2.24 16 21 C -0.08 -1.11 10.04 -39.60 -0.40 -1.51 16 22 C -0.20 -2.58 9.04 -39.43 -0.36 -2.94 16 23 C 0.12 1.73 6.69 -39.22 -0.26 1.47 16 24 O -0.32 -4.25 10.50 -19.44 -0.20 -4.45 16 25 C 0.03 0.25 9.81 101.05 0.99 1.24 16 26 C -0.12 -1.92 9.64 -39.43 -0.38 -2.30 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.75 8.07 -51.93 -0.42 1.33 16 33 H 0.09 1.58 7.42 -51.93 -0.39 1.19 16 34 H 0.05 1.38 7.12 -51.93 -0.37 1.01 16 35 H 0.04 1.13 7.38 -51.92 -0.38 0.75 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 38 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 39 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.13 1.27 6.30 -52.49 -0.33 0.94 16 42 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 43 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 385.59 15.07 5.81 5.81 Total: -1.00 -33.93 385.59 -6.83 -40.76 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.87 Total: 1.41 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 0.17 Total: 7.99 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.30 Total: -38.88 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -1.21 Total: -33.70 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.93 -6.83 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858944620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.342 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds