Wall clock time and date at job start Tue Mar 31 2020 14:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99502 * 2 1 4 4 C 1.53005 * 109.46821 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47324 * 65.00329 * 4 3 2 6 6 C 1.46497 * 119.99571 * 270.00024 * 5 4 3 7 7 C 1.50705 * 109.47142 * 269.99736 * 6 5 4 8 8 H 1.07999 * 119.99865 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00087 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00195 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00170 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46837 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47541 * 119.99314 * 11 9 7 14 14 H 1.48502 * 109.47175 * 240.00024 * 11 9 7 15 15 C 1.34771 * 120.00342 * 89.99327 * 5 4 3 16 16 O 1.21512 * 119.99760 * 0.02562 * 15 5 4 17 17 O 1.34641 * 120.00348 * 179.97438 * 15 5 4 18 18 C 1.45193 * 117.00047 * 180.02562 * 17 15 5 19 19 C 1.50703 * 109.46904 * 180.02562 * 18 17 15 20 20 C 1.38290 * 119.97179 * 269.97863 * 19 18 17 21 21 C 1.38246 * 120.11140 * 180.02562 * 20 19 18 22 22 C 1.38169 * 120.05594 * 359.67998 * 21 20 19 23 23 C 1.38709 * 119.93896 * 0.61802 * 22 21 20 24 24 O 1.35905 * 120.05570 * 179.67527 * 23 22 21 25 25 C 1.42901 * 116.99604 * 359.72908 * 24 23 22 26 26 C 1.38119 * 119.97324 * 90.00388 * 19 18 17 27 27 H 1.08995 * 109.47334 * 299.99615 * 1 2 3 28 28 H 1.09003 * 109.47415 * 60.00530 * 1 2 3 29 29 H 1.09003 * 109.46946 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47298 * 60.00564 * 3 2 1 31 31 H 1.09000 * 109.47206 * 300.00058 * 3 2 1 32 32 H 1.08997 * 109.46925 * 305.00197 * 4 3 2 33 33 H 1.09001 * 109.46817 * 185.00039 * 4 3 2 34 34 H 1.09004 * 109.47702 * 29.99901 * 6 5 4 35 35 H 1.09008 * 109.47111 * 149.99714 * 6 5 4 36 36 H 0.96996 * 120.00293 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46821 * 60.01308 * 18 17 15 38 38 H 1.08994 * 109.47673 * 300.00501 * 18 17 15 39 39 H 1.08001 * 119.94690 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.97049 * 179.97438 * 21 20 19 41 41 H 1.07997 * 120.02760 * 180.29730 * 22 21 20 42 42 H 1.08996 * 109.47352 * 299.99771 * 25 24 23 43 43 H 1.08999 * 109.47144 * 59.99795 * 25 24 23 44 44 H 1.08995 * 109.47253 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.02943 * 0.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.1052 -0.8918 -1.3428 7 6 5.5011 -1.2975 -0.9449 8 1 6.2196 -0.5457 -0.6537 9 6 5.8607 -2.6285 -0.9527 10 7 4.9856 -3.5442 -1.3068 11 14 7.5906 -3.1315 -0.4589 12 1 8.3761 -1.9216 -0.1058 13 1 7.5263 -4.0400 0.7140 14 1 8.2451 -3.8324 -1.5928 15 6 4.2614 1.3339 -2.3218 16 8 4.1542 2.5420 -2.2470 17 8 4.6665 0.7640 -3.4724 18 6 4.9573 1.6539 -4.5822 19 6 5.3921 0.8430 -5.7757 20 6 6.7309 0.5503 -5.9614 21 6 7.1331 -0.1929 -7.0555 22 6 6.1971 -0.6508 -7.9629 23 6 4.8544 -0.3533 -7.7821 24 8 3.9325 -0.7969 -8.6768 25 6 4.4173 -1.5596 -9.7837 26 6 4.4533 0.3932 -6.6834 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9784 2.1766 0.0889 34 1 3.3853 -1.3628 -0.6734 35 1 3.9120 -1.2112 -2.3669 36 1 5.2385 -4.4805 -1.3119 37 1 5.7555 2.3398 -4.2983 38 1 4.0628 2.2225 -4.8361 39 1 7.4635 0.9029 -5.2505 40 1 8.1792 -0.4198 -7.1986 41 1 6.5112 -1.2354 -8.8149 42 1 5.1190 -0.9571 -10.3605 43 1 4.9223 -2.4529 -9.4160 44 1 3.5806 -1.8509 -10.4185 45 1 3.4079 0.6227 -6.5384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858944620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:23 Heat of formation + Delta-G solvation = -152.112336 kcal Electronic energy + Delta-G solvation = -27639.260758 eV Core-core repulsion = 23622.144327 eV Total energy + Delta-G solvation = -4017.116431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56092 -41.02993 -39.15969 -38.57964 -37.46403 -36.61546 -34.59005 -33.03328 -31.51049 -31.21222 -29.00850 -28.29610 -27.44685 -26.92945 -24.88965 -24.22788 -23.58077 -22.17357 -21.33988 -19.07682 -18.92466 -18.50792 -17.98950 -17.60924 -17.16968 -17.11208 -16.95365 -16.75798 -16.63810 -16.40765 -15.83236 -15.47612 -15.17577 -14.90407 -14.53687 -14.40784 -13.98203 -13.85682 -13.60711 -13.42967 -13.36360 -13.09770 -12.84160 -12.77109 -12.72115 -12.62261 -12.55563 -12.15134 -12.02405 -11.92685 -11.84202 -11.67201 -11.60277 -11.51200 -10.61580 -10.53922 -9.99785 -9.56800 -9.22782 -8.15932 -6.30152 0.07167 0.42105 1.41238 1.41446 1.48677 1.55731 1.84721 2.31784 2.42390 2.70041 2.94302 3.14509 3.23668 3.68384 3.78875 3.98532 4.11820 4.12808 4.17535 4.24889 4.31588 4.35587 4.38316 4.40254 4.50189 4.52745 4.55675 4.58906 4.67883 4.72763 4.85003 4.87509 4.95906 4.99440 5.22914 5.32169 5.35233 5.39471 5.53668 5.66031 5.71016 5.81458 6.10499 6.28950 6.41293 6.51976 6.80105 7.33231 7.45408 8.91478 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008774 B = 0.004187 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.638384 B = 6686.142359 C = 8206.953353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.052 3.948 4 C 0.130 3.870 5 N -0.576 5.576 6 C 0.270 3.730 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.016 3.984 10 N -0.924 5.924 11 Si 0.962 3.038 12 H -0.268 1.268 13 H -0.274 1.274 14 H -0.279 1.279 15 C 0.645 3.355 16 O -0.615 6.615 17 O -0.365 6.365 18 C 0.125 3.875 19 C -0.068 4.068 20 C -0.141 4.141 21 C -0.083 4.083 22 C -0.196 4.196 23 C 0.112 3.888 24 O -0.338 6.338 25 C 0.017 3.983 26 C -0.146 4.146 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.033 0.967 35 H 0.006 0.994 36 H 0.266 0.734 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.119 0.881 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 6.772 -11.026 13.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.025 4.025 4 C 0.009 3.991 5 N -0.313 5.313 6 C 0.149 3.851 7 C -0.582 4.582 8 H 0.071 0.929 9 C -0.183 4.183 10 N -0.563 5.563 11 Si 0.787 3.213 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.204 1.204 15 C 0.400 3.600 16 O -0.509 6.509 17 O -0.279 6.279 18 C 0.051 3.949 19 C -0.068 4.068 20 C -0.160 4.160 21 C -0.100 4.100 22 C -0.215 4.215 23 C 0.067 3.933 24 O -0.252 6.252 25 C -0.077 4.077 26 C -0.164 4.164 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.051 0.949 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.151 0.849 40 H 0.176 0.824 41 H 0.177 0.823 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.137 0.863 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.506 6.785 -11.095 13.092 hybrid contribution 0.526 -0.332 0.121 0.634 sum -0.980 6.453 -10.974 12.768 Atomic orbital electron populations 1.22874 0.79942 1.03317 1.00691 1.88017 1.21249 1.28375 1.95503 1.23005 0.93365 0.84826 1.01300 1.21636 0.93097 0.99742 0.84648 1.47093 1.66051 1.08593 1.09526 1.18905 0.96093 0.73769 0.96308 1.21723 0.97913 0.92662 1.45923 0.92909 1.25730 1.01443 0.96238 0.94922 1.70067 1.36299 1.01417 1.48553 0.85447 0.79503 0.78298 0.78044 1.19197 1.19946 1.20422 1.18161 0.76756 0.83686 0.81364 1.90838 1.61968 1.13261 1.84835 1.86490 1.79770 1.41071 1.20554 1.21783 1.01739 0.90095 0.81327 1.19322 0.94129 0.99474 0.93909 1.21256 0.95030 1.00483 0.99181 1.21290 1.00962 0.95103 0.92676 1.21621 0.91451 1.05058 1.03326 1.19049 0.89008 0.94965 0.90303 1.86048 1.34901 1.68387 1.35831 1.23377 1.02914 0.94876 0.86518 1.20395 1.00150 1.01398 0.94504 0.91999 0.94131 0.89440 0.89013 0.94162 0.89054 0.87870 0.94912 0.97564 0.92498 0.89673 0.90101 0.84889 0.82421 0.82325 0.90962 0.92006 0.86291 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -15.09 9.53 -148.98 -1.42 -16.51 16 3 C 0.05 1.70 6.28 71.98 0.45 2.15 16 4 C 0.13 4.90 5.81 86.38 0.50 5.40 16 5 N -0.58 -26.84 2.42 -956.52 -2.31 -29.15 16 6 C 0.27 14.67 4.99 85.64 0.43 15.10 16 7 C -0.54 -30.98 9.39 25.60 0.24 -30.74 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.02 0.91 5.46 84.65 0.46 1.38 16 10 N -0.92 -55.12 13.29 21.45 0.28 -54.83 16 11 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 15 C 0.65 30.04 8.39 129.79 1.09 31.13 16 16 O -0.61 -28.12 15.71 19.80 0.31 -27.81 16 17 O -0.37 -16.75 9.03 -55.51 -0.50 -17.25 16 18 C 0.12 4.46 5.60 71.24 0.40 4.86 16 19 C -0.07 -2.25 5.52 -19.88 -0.11 -2.36 16 20 C -0.14 -4.17 9.70 22.28 0.22 -3.95 16 21 C -0.08 -2.01 10.04 22.26 0.22 -1.79 16 22 C -0.20 -4.65 9.04 22.37 0.20 -4.45 16 23 C 0.11 3.19 6.69 22.51 0.15 3.34 16 24 O -0.34 -8.76 10.50 -92.48 -0.97 -9.73 16 25 C 0.02 0.26 9.81 113.37 1.11 1.38 16 26 C -0.15 -4.69 9.64 22.37 0.22 -4.47 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 3.44 8.07 -2.39 -0.02 3.42 16 33 H 0.10 3.56 7.42 -2.39 -0.02 3.54 16 34 H 0.03 1.88 7.12 -2.38 -0.02 1.87 16 35 H 0.01 0.38 7.38 -2.38 -0.02 0.36 16 36 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 37 H 0.09 2.82 8.08 -2.39 -0.02 2.80 16 38 H 0.08 2.69 8.08 -2.39 -0.02 2.67 16 39 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.16 2.63 6.30 -2.91 -0.02 2.62 16 42 H 0.07 0.84 7.67 -2.39 -0.02 0.82 16 43 H 0.06 0.88 7.65 -2.39 -0.02 0.86 16 44 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -74.09 385.59 5.22 -68.86 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.98 Total: 21.24 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 6.83 Total: 18.95 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -2.03 Total: -83.98 kcal Atomic # 8 Polarization: -68.72 SS G_CDS: -2.58 Total: -71.30 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -74.09 5.22 -68.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858944620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.249 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds