Wall clock time and date at job start Tue Mar 31 2020 13:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.47202 * 2 1 4 4 C 1.46495 * 120.00210 * 270.00241 * 3 2 1 5 5 C 1.50703 * 109.47052 * 270.00033 * 4 3 2 6 6 H 1.07996 * 119.99979 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00149 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00203 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99721 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47600 * 89.99687 * 9 7 5 11 11 H 1.48504 * 109.46915 * 209.99605 * 9 7 5 12 12 H 1.48499 * 109.47156 * 329.99177 * 9 7 5 13 13 C 1.34780 * 119.99433 * 90.00265 * 3 2 1 14 14 O 1.21280 * 119.99200 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00200 * 0.02562 * 13 3 2 16 16 O 1.45202 * 109.46692 * 180.02562 * 15 13 3 17 17 C 1.34232 * 116.99480 * 179.97438 * 16 15 13 18 18 O 1.20821 * 120.00006 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99792 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47505 * 179.97438 * 19 17 16 21 21 H 1.09007 * 109.46636 * 54.99863 * 20 19 17 22 22 C 1.52999 * 109.47169 * 295.00341 * 20 19 17 23 23 C 1.50697 * 109.47363 * 174.99579 * 20 19 17 24 24 C 1.34515 * 125.79159 * 239.99820 * 23 20 19 25 25 C 1.41385 * 106.84000 * 180.02562 * 24 23 20 26 26 C 1.34507 * 106.84104 * 0.02562 * 25 24 23 27 27 O 1.34300 * 108.42410 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46809 * 299.99630 * 1 2 3 29 29 H 1.08999 * 109.47133 * 59.99780 * 1 2 3 30 30 H 1.09000 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46809 * 240.00370 * 2 1 3 32 32 H 1.08999 * 109.47133 * 120.00220 * 2 1 3 33 33 H 1.09006 * 109.47304 * 29.99593 * 4 3 2 34 34 H 1.08997 * 109.47441 * 150.00075 * 4 3 2 35 35 H 0.97002 * 119.99665 * 180.02562 * 8 7 5 36 36 H 1.08990 * 109.47277 * 60.00040 * 15 13 3 37 37 H 1.09000 * 109.46734 * 299.99590 * 15 13 3 38 38 H 1.09003 * 109.47680 * 59.99558 * 19 17 16 39 39 H 1.09002 * 109.47017 * 299.99844 * 19 17 16 40 40 H 1.09003 * 109.47255 * 179.97438 * 22 20 19 41 41 H 1.09007 * 109.46496 * 299.99609 * 22 20 19 42 42 H 1.08996 * 109.47143 * 59.99368 * 22 20 19 43 43 H 1.08001 * 126.57671 * 0.29417 * 24 23 20 44 44 H 1.08003 * 126.57418 * 180.02562 * 25 24 23 45 45 H 1.08001 * 125.78847 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0962 7 6 4.1492 2.3897 -2.8779 8 7 5.3914 2.1835 -3.2574 9 14 3.0128 3.4353 -3.9291 10 1 3.1162 4.8556 -3.5080 11 1 3.4058 3.3122 -5.3559 12 1 1.6131 2.9692 -3.7592 13 6 2.2431 2.0165 1.1673 14 8 2.6478 3.1598 1.1672 15 6 1.9925 1.3058 2.4723 16 8 2.3064 2.1956 3.5760 17 6 2.1352 1.7119 4.8163 18 8 1.7360 0.5826 4.9745 19 6 2.4400 2.5777 6.0115 20 6 2.1618 1.7923 7.2946 21 1 2.7252 0.8593 7.2788 22 6 0.6663 1.4834 7.3894 23 6 2.5820 2.6126 8.4869 24 6 3.5069 2.2602 9.3978 25 6 3.5824 3.3164 10.3346 26 6 2.6986 4.2507 9.9406 27 8 2.0957 3.8192 8.8208 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0956 3.1411 -1.1383 35 1 5.7173 2.5740 -4.0833 36 1 2.6230 0.4186 2.5298 37 1 0.9446 1.0113 2.5302 38 1 1.8099 3.4668 5.9863 39 1 3.4885 2.8748 5.9870 40 1 0.4682 0.9234 8.3034 41 1 0.1030 2.4165 7.4052 42 1 0.3625 0.8900 6.5271 43 1 4.0845 1.3477 9.4086 44 1 4.2261 3.3638 11.2006 45 1 2.5070 5.1892 10.4396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859817342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:13 Heat of formation + Delta-G solvation = -106.480315 kcal Electronic energy + Delta-G solvation = -26870.090341 eV Core-core repulsion = 22854.952663 eV Total energy + Delta-G solvation = -4015.137678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.87963 -40.72861 -39.14110 -36.89212 -35.49042 -35.28812 -33.21406 -32.78099 -30.51856 -29.95804 -29.05007 -28.25464 -26.82212 -23.66299 -23.07059 -22.36065 -22.04345 -21.07620 -20.07519 -18.68888 -18.12703 -17.31643 -17.04972 -16.79346 -16.69891 -16.24220 -16.05177 -15.33413 -15.13939 -14.70374 -14.43262 -13.88775 -13.68960 -13.57618 -13.49689 -13.10772 -12.99689 -12.95159 -12.77805 -12.43673 -12.40066 -12.23909 -11.88625 -11.79532 -11.66006 -11.48060 -11.35867 -11.04679 -10.90881 -10.62671 -10.54249 -10.48697 -10.20275 -10.19191 -9.58063 -9.13644 -8.76596 -8.61573 -7.84485 -6.11251 -4.10636 1.42364 2.06872 2.26990 2.43638 2.72106 3.14463 3.27543 3.33332 3.35443 3.72560 4.27314 4.31783 4.37157 4.57885 4.70848 4.74722 4.77563 4.86941 5.01505 5.11015 5.13483 5.21974 5.27957 5.29130 5.31445 5.47490 5.48808 5.55260 5.63635 5.64473 5.76424 5.79423 5.90799 5.98990 6.08248 6.20004 6.32663 6.35030 6.63895 6.85392 6.87895 7.22541 7.56271 7.62241 8.08952 8.42409 8.79706 8.92206 9.48249 11.02001 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.002305 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.730991 B =12143.594164 C =12867.385178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.328 6.328 17 C 0.465 3.535 18 O -0.510 6.510 19 C -0.112 4.112 20 C 0.005 3.995 21 H 0.111 0.889 22 C -0.157 4.157 23 C -0.004 4.004 24 C -0.207 4.207 25 C -0.214 4.214 26 C -0.042 4.042 27 O -0.172 6.172 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.651 -2.301 23.851 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.393 6.393 15 C -0.027 4.027 16 O -0.243 6.243 17 C 0.309 3.691 18 O -0.399 6.399 19 C -0.150 4.150 20 C -0.014 4.014 21 H 0.129 0.871 22 C -0.214 4.214 23 C -0.055 4.055 24 C -0.226 4.226 25 C -0.233 4.233 26 C -0.110 4.110 27 O -0.068 6.068 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -9.639 -1.823 23.518 25.481 hybrid contribution -0.185 0.293 -0.446 0.565 sum -9.824 -1.530 23.071 25.122 Atomic orbital electron populations 1.22246 0.96487 1.01883 1.02318 1.21543 0.93647 0.83563 1.03502 1.47877 1.64229 1.13546 1.06474 1.19702 0.97534 0.93436 0.79534 1.21309 0.95266 1.33137 1.07236 0.90697 1.24856 0.95026 0.95770 0.97340 1.69894 1.15103 1.44861 1.23556 0.86848 0.81407 0.81636 0.79777 1.19851 1.21032 1.19056 1.19737 0.79441 0.87134 0.84341 1.90720 1.44216 1.17613 1.86744 1.22931 1.02791 0.92672 0.84266 1.86572 1.78398 1.44914 1.14389 1.23590 0.74065 0.86859 0.84635 1.90632 1.42596 1.20038 1.86591 1.21476 1.06022 0.98978 0.88501 1.19576 0.99275 0.95930 0.86595 0.87087 1.22021 0.93166 1.02486 1.03713 1.22284 0.98156 0.85764 0.99264 1.21641 1.02259 1.01886 0.96816 1.21843 1.03377 0.95329 1.02800 1.24054 0.97436 1.01089 0.88400 1.84012 1.54512 1.30630 1.37674 0.93034 0.91978 0.91674 0.89175 0.91372 0.94879 0.94420 0.92505 0.88402 0.88620 0.86870 0.86882 0.92009 0.92298 0.89802 0.83381 0.83463 0.78117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.10 1.52 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.81 2.46 -175.05 -0.43 -12.24 16 4 C 0.22 5.23 4.23 -5.20 -0.02 5.21 16 5 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 9 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 13 C 0.51 10.40 7.75 -10.98 -0.09 10.32 16 14 O -0.52 -12.95 16.08 -14.10 -0.23 -13.18 16 15 C 0.05 0.79 4.50 36.00 0.16 0.95 16 16 O -0.33 -5.20 9.76 -45.91 -0.45 -5.65 16 17 C 0.47 5.96 7.68 36.00 0.28 6.23 16 18 O -0.51 -6.96 13.72 -18.75 -0.26 -7.22 16 19 C -0.11 -1.09 5.27 -27.89 -0.15 -1.24 16 20 C 0.00 0.04 2.44 -91.77 -0.22 -0.18 16 21 H 0.11 0.95 7.92 -51.93 -0.41 0.54 16 22 C -0.16 -1.39 8.92 37.16 0.33 -1.05 16 23 C 0.00 -0.04 5.83 -35.63 -0.21 -0.25 16 24 C -0.21 -1.82 10.78 -39.70 -0.43 -2.25 16 25 C -0.21 -1.70 10.91 -39.70 -0.43 -2.13 16 26 C -0.04 -0.32 12.09 29.41 0.36 0.04 16 27 O -0.17 -1.67 10.65 5.71 0.06 -1.61 16 28 H 0.05 0.60 7.22 -51.93 -0.38 0.22 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 32 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 33 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 34 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 35 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.10 1.38 7.39 -51.93 -0.38 1.00 16 37 H 0.10 1.25 7.18 -51.93 -0.37 0.88 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.84 5.96 -51.93 -0.31 0.53 16 43 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.15 0.86 8.06 -52.48 -0.42 0.43 16 45 H 0.20 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -35.64 380.36 -6.70 -42.33 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.73 Total: -0.19 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.51 Total: 2.02 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.34 Total: -38.93 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.87 Total: -27.65 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.64 -6.70 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859817342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.149 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds