Wall clock time and date at job start Tue Mar 31 2020 13:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.47202 * 2 1 4 4 C 1.46495 * 120.00210 * 270.00241 * 3 2 1 5 5 C 1.50703 * 109.47052 * 270.00033 * 4 3 2 6 6 H 1.07996 * 119.99979 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00149 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00203 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99721 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47600 * 89.99687 * 9 7 5 11 11 H 1.48504 * 109.46915 * 209.99605 * 9 7 5 12 12 H 1.48499 * 109.47156 * 329.99177 * 9 7 5 13 13 C 1.34780 * 119.99433 * 90.00265 * 3 2 1 14 14 O 1.21280 * 119.99200 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00200 * 0.02562 * 13 3 2 16 16 O 1.45202 * 109.46692 * 180.02562 * 15 13 3 17 17 C 1.34232 * 116.99480 * 179.97438 * 16 15 13 18 18 O 1.20821 * 120.00006 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99792 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47505 * 179.97438 * 19 17 16 21 21 H 1.09007 * 109.46636 * 54.99863 * 20 19 17 22 22 C 1.52999 * 109.47169 * 295.00341 * 20 19 17 23 23 C 1.50697 * 109.47363 * 174.99579 * 20 19 17 24 24 C 1.34515 * 125.79159 * 239.99820 * 23 20 19 25 25 C 1.41385 * 106.84000 * 180.02562 * 24 23 20 26 26 C 1.34507 * 106.84104 * 0.02562 * 25 24 23 27 27 O 1.34300 * 108.42410 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46809 * 299.99630 * 1 2 3 29 29 H 1.08999 * 109.47133 * 59.99780 * 1 2 3 30 30 H 1.09000 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46809 * 240.00370 * 2 1 3 32 32 H 1.08999 * 109.47133 * 120.00220 * 2 1 3 33 33 H 1.09006 * 109.47304 * 29.99593 * 4 3 2 34 34 H 1.08997 * 109.47441 * 150.00075 * 4 3 2 35 35 H 0.97002 * 119.99665 * 180.02562 * 8 7 5 36 36 H 1.08990 * 109.47277 * 60.00040 * 15 13 3 37 37 H 1.09000 * 109.46734 * 299.99590 * 15 13 3 38 38 H 1.09003 * 109.47680 * 59.99558 * 19 17 16 39 39 H 1.09002 * 109.47017 * 299.99844 * 19 17 16 40 40 H 1.09003 * 109.47255 * 179.97438 * 22 20 19 41 41 H 1.09007 * 109.46496 * 299.99609 * 22 20 19 42 42 H 1.08996 * 109.47143 * 59.99368 * 22 20 19 43 43 H 1.08001 * 126.57671 * 0.29417 * 24 23 20 44 44 H 1.08003 * 126.57418 * 180.02562 * 25 24 23 45 45 H 1.08001 * 125.78847 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0962 7 6 4.1492 2.3897 -2.8779 8 7 5.3914 2.1835 -3.2574 9 14 3.0128 3.4353 -3.9291 10 1 3.1162 4.8556 -3.5080 11 1 3.4058 3.3122 -5.3559 12 1 1.6131 2.9692 -3.7592 13 6 2.2431 2.0165 1.1673 14 8 2.6478 3.1598 1.1672 15 6 1.9925 1.3058 2.4723 16 8 2.3064 2.1956 3.5760 17 6 2.1352 1.7119 4.8163 18 8 1.7360 0.5826 4.9745 19 6 2.4400 2.5777 6.0115 20 6 2.1618 1.7923 7.2946 21 1 2.7252 0.8593 7.2788 22 6 0.6663 1.4834 7.3894 23 6 2.5820 2.6126 8.4869 24 6 3.5069 2.2602 9.3978 25 6 3.5824 3.3164 10.3346 26 6 2.6986 4.2507 9.9406 27 8 2.0957 3.8192 8.8208 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0956 3.1411 -1.1383 35 1 5.7173 2.5740 -4.0833 36 1 2.6230 0.4186 2.5298 37 1 0.9446 1.0113 2.5302 38 1 1.8099 3.4668 5.9863 39 1 3.4885 2.8748 5.9870 40 1 0.4682 0.9234 8.3034 41 1 0.1030 2.4165 7.4052 42 1 0.3625 0.8900 6.5271 43 1 4.0845 1.3477 9.4086 44 1 4.2261 3.3638 11.2006 45 1 2.5070 5.1892 10.4396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859817342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:12 Heat of formation + Delta-G solvation = -127.891819 kcal Electronic energy + Delta-G solvation = -26871.018813 eV Core-core repulsion = 22854.952663 eV Total energy + Delta-G solvation = -4016.066150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.50419 -41.84771 -40.65830 -37.98971 -37.04860 -36.15068 -34.88613 -33.83347 -32.08792 -31.05997 -30.04096 -29.21476 -28.30652 -24.69710 -24.37627 -23.88226 -22.69632 -22.02890 -20.79041 -20.21027 -19.13919 -19.10056 -18.12982 -18.01270 -17.91238 -17.39534 -16.96425 -16.73006 -16.41486 -16.00890 -15.49538 -15.18852 -14.88733 -14.77819 -14.56148 -14.20418 -14.18221 -13.84709 -13.73183 -13.70737 -13.48915 -13.41981 -13.32558 -13.15021 -12.60924 -12.57176 -12.42054 -12.38157 -12.12003 -12.05747 -12.01719 -11.75988 -11.74477 -11.50237 -10.83873 -10.82519 -10.79026 -9.53367 -9.38291 -8.34394 -6.39987 0.78072 1.06308 1.25210 1.34052 1.37612 1.45697 1.57723 1.74293 2.10587 2.30787 2.36002 2.99821 3.38712 3.47155 3.60444 3.83338 3.88652 3.97986 4.01833 4.14832 4.15899 4.29906 4.34235 4.36587 4.57378 4.58507 4.59350 4.75721 4.84000 4.86823 4.92058 4.95862 4.99127 5.03028 5.10104 5.18099 5.21748 5.36241 5.41786 5.44502 5.56572 5.62831 6.20914 6.23667 6.49133 6.61553 6.62168 7.15292 7.28435 8.82434 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.002305 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.730991 B =12143.594164 C =12867.385178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.593 5.593 4 C 0.226 3.774 5 C -0.538 4.538 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.236 1.236 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.061 3.939 16 O -0.352 6.352 17 C 0.468 3.532 18 O -0.517 6.517 19 C -0.107 4.107 20 C 0.011 3.989 21 H 0.113 0.887 22 C -0.152 4.152 23 C -0.021 4.021 24 C -0.216 4.216 25 C -0.229 4.229 26 C -0.043 4.043 27 O -0.188 6.188 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.021 0.979 35 H 0.269 0.731 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.158 0.842 44 H 0.166 0.834 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.823 -2.625 25.009 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.029 4.029 3 N -0.325 5.325 4 C 0.104 3.896 5 C -0.576 4.576 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.159 1.159 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.015 4.015 16 O -0.267 6.267 17 C 0.312 3.688 18 O -0.406 6.406 19 C -0.145 4.145 20 C -0.008 4.008 21 H 0.131 0.869 22 C -0.209 4.209 23 C -0.071 4.071 24 C -0.235 4.235 25 C -0.248 4.248 26 C -0.110 4.110 27 O -0.085 6.085 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.176 0.824 44 H 0.183 0.817 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -11.845 -2.216 24.701 27.483 hybrid contribution 0.580 0.336 -0.687 0.959 sum -11.266 -1.880 24.014 26.591 Atomic orbital electron populations 1.22180 0.93654 1.03928 1.02276 1.21898 0.95903 0.80716 1.04426 1.47978 1.63872 1.15350 1.05289 1.19376 0.95075 0.93153 0.81990 1.21542 0.97028 1.32277 1.06787 0.95237 1.25860 0.96752 0.97174 0.98972 1.70048 1.17414 1.46485 1.24486 0.85717 0.80537 0.78974 0.77746 1.20235 1.20025 1.15869 1.20599 0.78048 0.86685 0.85959 1.90681 1.46830 1.20242 1.87759 1.22817 1.04910 0.91928 0.81883 1.86579 1.79048 1.45709 1.15400 1.24082 0.73467 0.87096 0.84131 1.90625 1.43004 1.20484 1.86460 1.21566 1.06637 0.98840 0.87425 1.19512 0.99322 0.95864 0.86073 0.86870 1.21966 0.93139 1.02396 1.03447 1.22307 0.98912 0.86111 0.99722 1.21945 1.02076 1.02577 0.96928 1.22170 1.04000 0.95176 1.03411 1.24773 0.96621 1.02023 0.87556 1.84002 1.55081 1.30818 1.38563 0.92187 0.92936 0.88529 0.90070 0.88774 0.92632 0.96138 0.92239 0.86773 0.85510 0.86049 0.86125 0.91380 0.92190 0.90935 0.82407 0.81660 0.74980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 10.24 71.98 0.74 -2.68 16 2 C 0.09 2.60 5.93 86.38 0.51 3.11 16 3 N -0.59 -23.59 2.46 -826.14 -2.03 -25.62 16 4 C 0.23 10.85 4.23 85.63 0.36 11.21 16 5 C -0.54 -31.46 9.94 25.60 0.25 -31.21 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 7 C 0.01 0.62 5.47 84.66 0.46 1.08 16 8 N -0.94 -59.63 13.96 21.45 0.30 -59.34 16 9 Si 0.95 44.09 27.47 68.60 1.88 45.98 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 13 C 0.50 20.48 7.75 87.66 0.68 21.15 16 14 O -0.58 -29.64 16.08 15.77 0.25 -29.39 16 15 C 0.06 1.82 4.50 71.24 0.32 2.14 16 16 O -0.35 -10.91 9.76 -45.08 -0.44 -11.35 16 17 C 0.47 11.45 7.68 71.24 0.55 12.00 16 18 O -0.52 -13.27 13.72 21.98 0.30 -12.97 16 19 C -0.11 -1.98 5.27 29.85 0.16 -1.83 16 20 C 0.01 0.18 2.44 -11.54 -0.03 0.15 16 21 H 0.11 1.82 7.92 -2.38 -0.02 1.80 16 22 C -0.15 -2.52 8.92 71.98 0.64 -1.87 16 23 C -0.02 -0.36 5.83 24.83 0.14 -0.22 16 24 C -0.22 -3.55 10.78 22.19 0.24 -3.31 16 25 C -0.23 -3.23 10.91 22.19 0.24 -2.99 16 26 C -0.04 -0.57 12.09 66.97 0.81 0.24 16 27 O -0.19 -3.40 10.65 -2.50 -0.03 -3.42 16 28 H 0.06 1.17 7.22 -2.39 -0.02 1.16 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 32 H 0.09 2.14 6.44 -2.39 -0.02 2.13 16 33 H 0.06 2.42 7.13 -2.38 -0.02 2.40 16 34 H 0.02 1.06 6.85 -2.39 -0.02 1.04 16 35 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 36 H 0.11 3.01 7.39 -2.39 -0.02 2.99 16 37 H 0.13 2.95 7.18 -2.39 -0.02 2.94 16 38 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.07 1.37 5.96 -2.39 -0.01 1.35 16 43 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 44 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.23 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -80.72 380.36 7.26 -73.46 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.93 Total: 15.68 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 6.08 Total: 6.97 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -1.73 Total: -84.96 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: 0.09 Total: -57.13 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Total: -80.72 7.26 -73.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859817342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.429 kcal (2) G-P(sol) polarization free energy of solvation -80.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds