Wall clock time and date at job start Tue Mar 31 2020 14:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.36020 * 116.99471 * 180.02562 * 5 4 3 7 7 C 1.38000 * 120.01195 * 359.72698 * 6 5 4 8 8 C 1.39878 * 119.86700 * 179.74876 * 7 6 5 9 9 C 1.47378 * 120.05910 * 180.24964 * 8 7 6 10 10 O 1.21518 * 120.00335 * 0.27771 * 9 8 7 11 11 O 1.34773 * 119.99927 * 180.27266 * 9 8 7 12 12 C 1.45196 * 116.99984 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47161 * 180.02562 * 12 11 9 14 14 C 1.52992 * 109.47080 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46966 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99871 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00169 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00145 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99875 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46978 * 90.00358 * 19 17 15 21 21 H 1.48497 * 109.47278 * 209.99994 * 19 17 15 22 22 H 1.48501 * 109.47486 * 330.00718 * 19 17 15 23 23 C 1.39819 * 119.87777 * 0.52582 * 8 7 6 24 24 C 1.37684 * 120.01626 * 359.74696 * 23 8 7 25 25 C 1.39063 * 120.13500 * 359.97438 * 24 23 8 26 26 N 1.39259 * 119.94078 * 179.97438 * 25 24 23 27 27 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 28 28 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 29 29 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 31 31 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 32 32 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 33 33 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 34 34 H 1.07998 * 120.06685 * 359.97438 * 7 6 5 35 35 H 1.09006 * 109.47035 * 299.99969 * 12 11 9 36 36 H 1.09001 * 109.47278 * 59.99959 * 12 11 9 37 37 H 1.09004 * 109.46765 * 300.00306 * 13 12 11 38 38 H 1.09001 * 109.47288 * 59.99684 * 13 12 11 39 39 H 1.09000 * 109.47838 * 299.99445 * 14 13 12 40 40 H 1.08996 * 109.47206 * 60.00300 * 14 13 12 41 41 H 0.97006 * 119.99840 * 179.97438 * 18 17 15 42 42 H 1.08000 * 119.98772 * 179.72913 * 23 8 7 43 43 H 1.07997 * 119.93023 * 179.97438 * 24 23 8 44 44 H 0.97002 * 120.00084 * 180.02562 * 26 25 24 45 45 H 0.96993 * 120.00049 * 0.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3041 0.3974 -1.3808 7 6 6.1788 0.7971 -0.3910 8 6 7.5541 0.6037 -0.5572 9 6 8.4916 1.0239 0.4995 10 8 8.0697 1.5342 1.5185 11 8 9.8169 0.8420 0.3359 12 6 10.6809 1.2792 1.4178 13 6 12.1391 0.9936 1.0533 14 6 13.0495 1.4549 2.1931 15 6 14.4858 1.1730 1.8343 16 1 14.7253 0.7114 0.8877 17 6 15.4941 1.5043 2.7144 18 7 16.7474 1.2578 2.4014 19 14 15.0798 2.3033 4.3513 20 1 14.8692 1.2501 5.3769 21 1 16.1996 3.1844 4.7695 22 1 13.8414 3.1102 4.2090 23 6 8.0383 0.0164 -1.7300 24 6 7.1616 -0.3753 -2.7168 25 6 5.7937 -0.1887 -2.5498 26 7 4.9107 -0.5859 -3.5507 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9783 2.1768 0.0902 33 1 3.8508 0.5687 0.8427 34 1 5.8019 1.2548 0.5116 35 1 10.5496 2.3495 1.5778 36 1 10.4218 0.7411 2.3297 37 1 12.2706 -0.0765 0.8930 38 1 12.3979 1.5320 0.1415 39 1 12.9179 2.5250 2.3529 40 1 12.7909 0.9168 3.1050 41 1 17.4568 1.4913 3.0205 42 1 9.1002 -0.1297 -1.8620 43 1 7.5371 -0.8284 -3.6224 44 1 3.9565 -0.4558 -3.4353 45 1 5.2500 -0.9926 -4.3633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860090413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:48 Heat of formation + Delta-G solvation = -177.240626 kcal Electronic energy + Delta-G solvation = -25988.701280 eV Core-core repulsion = 21970.495205 eV Total energy + Delta-G solvation = -4018.206075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.72330 -40.90454 -39.11670 -38.09667 -37.72624 -35.91824 -35.57933 -33.84510 -31.98013 -30.97549 -30.21053 -29.07133 -27.28165 -25.58816 -24.63990 -24.00721 -22.70405 -22.09247 -21.82744 -19.64235 -19.01462 -18.47578 -17.90584 -17.84048 -17.63078 -17.59260 -17.31780 -16.42249 -16.30968 -16.25345 -16.21332 -15.67380 -15.41547 -14.90166 -14.80428 -14.68789 -14.25205 -14.11520 -13.87007 -13.72033 -13.37046 -13.26264 -12.85498 -12.64653 -12.49724 -12.34666 -12.25520 -12.10547 -11.99494 -11.86031 -11.75747 -11.72557 -11.46762 -11.37310 -11.33699 -10.76719 -10.67702 -9.67181 -8.38169 -8.29468 -6.34240 -0.21888 0.39044 1.37294 1.38662 1.50620 1.55766 1.66091 2.11274 2.36329 2.77142 2.80056 2.86849 3.05646 3.67128 3.72144 3.92818 4.02240 4.05794 4.07883 4.11425 4.20204 4.32212 4.37785 4.39336 4.50522 4.53019 4.56874 4.64947 4.70120 4.75604 4.76206 4.86923 4.97339 4.99402 5.14585 5.35973 5.37014 5.50061 5.52512 5.60567 5.63247 6.09683 6.19244 6.26784 6.53699 6.71384 6.75428 6.91157 7.30150 8.86963 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022085 B = 0.001961 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.499322 B =14273.963447 C =15408.185279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.064 3.936 4 C 0.055 3.945 5 O -0.315 6.315 6 C 0.029 3.971 7 C -0.104 4.104 8 C -0.179 4.179 9 C 0.508 3.492 10 O -0.550 6.550 11 O -0.353 6.353 12 C 0.075 3.925 13 C -0.091 4.091 14 C -0.010 4.010 15 C -0.534 4.534 16 H 0.037 0.963 17 C 0.006 3.994 18 N -0.949 5.949 19 Si 0.949 3.051 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.247 1.247 23 C -0.036 4.036 24 C -0.183 4.183 25 C 0.241 3.759 26 N -0.845 5.845 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.136 0.864 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.267 0.733 42 H 0.146 0.854 43 H 0.168 0.832 44 H 0.410 0.590 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.543 -1.751 -11.649 38.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.012 4.012 4 C -0.020 4.020 5 O -0.230 6.230 6 C -0.019 4.019 7 C -0.124 4.124 8 C -0.183 4.183 9 C 0.356 3.644 10 O -0.443 6.443 11 O -0.270 6.270 12 C 0.002 3.998 13 C -0.129 4.129 14 C -0.047 4.047 15 C -0.572 4.572 16 H 0.055 0.945 17 C -0.191 4.191 18 N -0.589 5.589 19 Si 0.772 3.228 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.170 1.170 23 C -0.055 4.055 24 C -0.206 4.206 25 C 0.131 3.869 26 N -0.383 5.383 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.154 0.846 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.164 0.836 43 H 0.185 0.815 44 H 0.240 0.760 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -36.516 -1.798 -11.417 38.301 hybrid contribution 0.293 0.564 0.998 1.184 sum -36.223 -1.234 -10.418 37.712 Atomic orbital electron populations 1.22917 0.79336 1.03735 1.01050 1.87924 1.21570 1.28320 1.95673 1.22676 0.90233 0.85372 1.02911 1.23026 0.94789 0.98660 0.85557 1.85982 1.18411 1.78385 1.40203 1.18200 0.83326 1.05180 0.95209 1.21012 0.91666 1.00516 0.99185 1.18576 0.91392 1.12366 0.95949 1.21543 0.81853 0.74740 0.86221 1.90771 1.79210 1.43317 1.30955 1.86527 1.17643 1.75959 1.46838 1.23192 0.88752 0.99992 0.87892 1.21318 0.89785 1.01996 0.99799 1.19452 0.93247 0.96904 0.95115 1.21406 0.91452 1.40284 1.04054 0.94511 1.25984 0.94581 0.95918 1.02614 1.70059 1.00530 1.49726 1.38586 0.85680 0.78810 0.79263 0.79063 1.19105 1.20812 1.17046 1.21319 1.01238 0.92378 0.90585 1.20700 0.89415 1.08202 1.02301 1.17524 0.90767 0.91790 0.86844 1.42337 1.08776 1.68003 1.19208 0.92872 0.92940 0.89024 0.88960 0.91113 0.89214 0.91898 0.84580 0.91252 0.91253 0.91709 0.91680 0.95642 0.95795 0.92410 0.83624 0.81474 0.76022 0.75343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.50 10.67 -144.34 -1.54 -8.04 16 3 C 0.06 0.73 6.32 71.98 0.45 1.18 16 4 C 0.05 0.82 5.12 71.98 0.37 1.19 16 5 O -0.31 -5.79 9.33 -89.13 -0.83 -6.62 16 6 C 0.03 0.59 6.70 22.55 0.15 0.74 16 7 C -0.10 -2.48 8.57 22.61 0.19 -2.28 16 8 C -0.18 -4.76 5.87 -20.09 -0.12 -4.88 16 9 C 0.51 16.71 7.89 70.23 0.55 17.26 16 10 O -0.55 -20.54 16.13 19.78 0.32 -20.23 16 11 O -0.35 -11.92 9.46 -56.84 -0.54 -12.46 16 12 C 0.08 2.68 5.48 71.98 0.39 3.07 16 13 C -0.09 -3.67 5.53 30.59 0.17 -3.50 16 14 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 15 C -0.53 -31.15 9.66 25.60 0.25 -30.91 16 16 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 17 C 0.01 0.36 5.47 84.65 0.46 0.82 16 18 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 19 Si 0.95 44.67 27.47 68.60 1.88 46.56 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 23 C -0.04 -0.77 9.60 22.52 0.22 -0.55 16 24 C -0.18 -2.92 9.86 22.34 0.22 -2.70 16 25 C 0.24 3.99 6.77 38.50 0.26 4.25 16 26 N -0.84 -8.48 9.05 -51.09 -0.46 -8.95 16 27 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 1.12 7.65 -2.39 -0.02 1.10 16 33 H 0.06 1.06 7.67 -2.39 -0.02 1.04 16 34 H 0.14 3.23 5.87 -2.91 -0.02 3.21 16 35 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 38 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.03 1.17 7.20 -2.39 -0.02 1.16 16 40 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 41 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 42 H 0.15 2.96 7.60 -2.91 -0.02 2.94 16 43 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 44 H 0.41 3.94 8.17 -92.71 -0.76 3.18 16 45 H 0.42 1.95 8.83 -92.71 -0.82 1.13 16 Total: -1.00 -75.68 382.88 3.46 -72.21 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -0.61 Total: 12.30 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.94 Total: -15.19 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -0.16 Total: -68.54 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -2.59 Total: -47.35 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -75.68 3.46 -72.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860090413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.026 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds