Wall clock time and date at job start Tue Mar 31 2020 14:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99691 * 2 1 4 4 C 1.53000 * 109.47087 * 199.90626 * 3 2 1 5 5 O 1.42902 * 109.47322 * 300.00270 * 4 3 2 6 6 C 1.42900 * 114.00334 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47137 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46907 * 65.00175 * 7 6 5 9 9 C 1.34782 * 120.00055 * 180.02562 * 8 7 6 10 10 O 1.21611 * 119.99667 * 359.97438 * 9 8 7 11 11 C 1.47429 * 120.00295 * 179.97438 * 9 8 7 12 12 C 1.39228 * 120.28078 * 353.58302 * 11 9 8 13 13 C 1.38224 * 120.09195 * 180.27605 * 12 11 9 14 14 C 1.38829 * 120.67222 * 359.69710 * 13 12 11 15 15 C 1.37594 * 120.57158 * 359.97438 * 14 13 12 16 16 C 1.40704 * 119.88348 * 0.02562 * 15 14 13 17 17 C 1.40890 * 120.32919 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99819 * 143.65716 * 17 16 15 19 19 C 1.40272 * 120.00083 * 323.66291 * 17 16 15 20 20 N 1.30631 * 119.99895 * 340.35401 * 19 17 16 21 21 Si 1.86797 * 119.99945 * 160.35495 * 19 17 16 22 22 H 1.48499 * 109.47127 * 269.99967 * 21 19 17 23 23 H 1.48498 * 109.47115 * 30.00283 * 21 19 17 24 24 H 1.48508 * 109.47001 * 150.00068 * 21 19 17 25 25 O 1.42900 * 109.47111 * 79.90703 * 3 2 1 26 26 C 1.42899 * 113.99782 * 286.67018 * 25 3 2 27 27 H 1.08994 * 109.47439 * 62.68285 * 1 2 3 28 28 H 1.09005 * 109.46747 * 182.68901 * 1 2 3 29 29 H 1.09001 * 109.46930 * 302.68642 * 1 2 3 30 30 H 1.09003 * 109.47079 * 319.90365 * 3 2 1 31 31 H 1.08995 * 109.47468 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47154 * 59.99656 * 4 3 2 33 33 H 1.08996 * 109.46813 * 59.99744 * 6 5 4 34 34 H 1.08999 * 109.46627 * 299.99738 * 6 5 4 35 35 H 1.08998 * 109.47316 * 305.00260 * 7 6 5 36 36 H 1.08994 * 109.47146 * 184.99939 * 7 6 5 37 37 H 0.96998 * 120.00537 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.95398 * 359.97438 * 12 11 9 39 39 H 1.07997 * 119.66505 * 179.71082 * 13 12 11 40 40 H 1.07997 * 119.71238 * 180.02562 * 14 13 12 41 41 H 1.08004 * 120.05765 * 180.02562 * 15 14 13 42 42 H 0.96995 * 120.00213 * 356.61791 * 20 19 17 43 43 H 1.08998 * 109.47392 * 320.26820 * 26 25 3 44 44 H 1.09005 * 109.46588 * 80.26808 * 26 25 3 45 45 H 1.09003 * 109.47056 * 200.26302 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4567 1.2198 -0.4911 5 8 4.2046 0.3654 0.3765 6 6 5.5761 0.2159 0.0044 7 6 6.2757 -0.7138 0.9979 8 7 5.6987 -2.0568 0.8994 9 6 6.1615 -3.0485 1.6862 10 8 7.0583 -2.8285 2.4775 11 6 5.5805 -4.3999 1.5874 12 6 4.4676 -4.6286 0.7827 13 6 3.9226 -5.8960 0.6975 14 6 4.4775 -6.9544 1.4039 15 6 5.5814 -6.7609 2.2021 16 6 6.1554 -5.4805 2.3062 17 6 7.2855 -5.2716 3.1212 18 1 8.0521 -4.5760 2.8133 19 6 7.4150 -5.9671 4.3324 20 7 6.3630 -6.4977 4.8966 21 14 9.0917 -6.1347 5.1386 22 1 9.7568 -7.3677 4.6461 23 1 9.9247 -4.9533 4.7985 24 1 8.9265 -6.2162 6.6122 25 8 1.9882 1.8367 1.3264 26 6 0.6909 2.2398 1.7696 27 1 -0.3634 0.4716 -0.9130 28 1 -0.3633 -1.0266 0.0482 29 1 -0.3633 0.5550 0.8649 30 1 1.4398 1.9571 -0.6619 31 1 3.9002 2.2155 -0.4907 32 1 3.4735 0.8146 -1.5029 33 1 6.0636 1.1907 0.0143 34 1 5.6364 -0.2104 -0.9970 35 1 6.1390 -0.3330 2.0100 36 1 7.3399 -0.7578 0.7669 37 1 4.9831 -2.2322 0.2685 38 1 4.0265 -3.8135 0.2281 39 1 3.0564 -6.0646 0.0748 40 1 4.0393 -7.9384 1.3257 41 1 6.0066 -7.5904 2.7477 42 1 5.4854 -6.3691 4.5041 43 1 0.1602 2.7225 0.9489 44 1 0.1313 1.3643 2.0991 45 1 0.7915 2.9399 2.5990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867656563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:13 Heat of formation + Delta-G solvation = -150.278091 kcal Electronic energy + Delta-G solvation = -27455.419230 eV Core-core repulsion = 23438.382339 eV Total energy + Delta-G solvation = -4017.036892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.64267 -38.94033 -37.77288 -36.76509 -36.16384 -34.18305 -33.58805 -30.90823 -30.01565 -29.34997 -28.29248 -26.83880 -26.22545 -25.10151 -22.98904 -22.60308 -21.71370 -20.75716 -19.39729 -17.97828 -17.84189 -17.76522 -16.57909 -16.29663 -16.11866 -15.87915 -14.86920 -14.68815 -14.58233 -14.44005 -14.17638 -13.92174 -13.84020 -13.75918 -13.51603 -13.13597 -12.67537 -12.58678 -12.52806 -12.14624 -11.96647 -11.67668 -11.59525 -11.44671 -11.13771 -11.05892 -10.80825 -10.65903 -10.30348 -10.25738 -10.05614 -10.01170 -9.74111 -9.50974 -8.95288 -8.42182 -8.23739 -7.68759 -7.48480 -7.05772 -4.35045 2.34841 2.82427 3.26017 3.29124 3.37560 3.44004 3.48226 3.48589 4.07378 4.12827 4.19358 4.37518 4.72759 4.75063 4.79290 4.87346 4.97390 5.07806 5.10053 5.16073 5.17109 5.24086 5.35133 5.36488 5.54154 5.54803 5.89906 5.99190 6.05804 6.19051 6.30061 6.60621 6.71075 6.78894 6.80969 7.07840 7.10038 7.26879 7.38047 7.59210 7.71995 7.81473 7.98012 8.20281 8.31766 8.52135 8.83361 8.95904 9.48945 10.15648 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.003059 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.992272 B = 9150.256305 C = 9898.160480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.377 6.377 3 C 0.246 3.754 4 C 0.079 3.921 5 O -0.359 6.359 6 C 0.049 3.951 7 C 0.130 3.870 8 N -0.742 5.742 9 C 0.563 3.437 10 O -0.539 6.539 11 C -0.260 4.260 12 C -0.042 4.042 13 C -0.259 4.259 14 C -0.076 4.076 15 C -0.201 4.201 16 C 0.123 3.877 17 C -0.469 4.469 18 H 0.101 0.899 19 C 0.031 3.969 20 N -0.797 5.797 21 Si 1.074 2.926 22 H -0.276 1.276 23 H -0.274 1.274 24 H -0.277 1.277 25 O -0.380 6.380 26 C 0.021 3.979 27 H 0.040 0.960 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.395 0.605 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.297 0.703 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 15.739 -11.170 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.297 6.297 3 C 0.151 3.849 4 C 0.002 3.998 5 O -0.278 6.278 6 C -0.027 4.027 7 C 0.005 3.995 8 N -0.397 5.397 9 C 0.357 3.643 10 O -0.417 6.417 11 C -0.265 4.265 12 C -0.061 4.061 13 C -0.278 4.278 14 C -0.095 4.095 15 C -0.221 4.221 16 C 0.118 3.882 17 C -0.496 4.496 18 H 0.119 0.881 19 C -0.190 4.190 20 N -0.421 5.421 21 Si 0.898 3.102 22 H -0.202 1.202 23 H -0.198 1.198 24 H -0.202 1.202 25 O -0.300 6.300 26 C -0.076 4.076 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.229 0.771 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.927 14.996 -8.977 19.191 hybrid contribution -1.921 0.992 -2.104 3.017 sum -9.848 15.989 -11.081 21.804 Atomic orbital electron populations 1.23198 0.81348 1.03917 1.00126 1.88200 1.19463 1.28386 1.93668 1.23499 0.93854 0.83105 0.84469 1.22455 0.88446 0.95175 0.93772 1.88165 1.20917 1.67395 1.51277 1.22840 0.82646 0.99034 0.98221 1.21121 0.96464 0.82519 0.99385 1.45913 1.41328 1.08982 1.43506 1.18361 0.82048 0.84441 0.79463 1.90687 1.30600 1.83375 1.37074 1.19465 1.02081 0.92218 1.12713 1.20764 0.94295 0.95667 0.95395 1.20243 1.04541 0.93818 1.09194 1.20736 0.95618 0.96986 0.96161 1.21225 0.99922 0.96723 1.04186 1.17510 0.90562 0.89526 0.90583 1.21045 1.04512 1.20304 1.03744 0.88149 1.27203 1.05238 0.90904 0.95640 1.70362 1.01601 1.32251 1.37889 0.83507 0.72889 0.77528 0.76316 1.20181 1.19843 1.20218 1.88168 1.28911 1.80311 1.32601 1.23060 0.85220 0.99562 0.99717 0.94108 0.89057 0.92958 0.91614 0.91288 0.91204 0.92089 0.92776 0.91279 0.90704 0.77052 0.88907 0.88955 0.88959 0.87706 0.88907 0.94051 0.92900 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.62 101.05 1.07 1.16 16 2 O -0.38 -4.82 10.48 -63.57 -0.67 -5.49 16 3 C 0.25 2.64 3.20 37.16 0.12 2.76 16 4 C 0.08 0.81 6.03 37.16 0.22 1.03 16 5 O -0.36 -5.12 10.07 -55.74 -0.56 -5.68 16 6 C 0.05 0.60 6.07 37.16 0.23 0.83 16 7 C 0.13 2.10 6.06 -4.04 -0.02 2.08 16 8 N -0.74 -14.45 5.45 -61.38 -0.33 -14.78 16 9 C 0.56 13.92 7.71 -12.52 -0.10 13.82 16 10 O -0.54 -15.01 13.66 5.27 0.07 -14.93 16 11 C -0.26 -6.67 5.92 -104.37 -0.62 -7.29 16 12 C -0.04 -0.95 9.51 -39.22 -0.37 -1.33 16 13 C -0.26 -5.68 10.03 -39.37 -0.39 -6.08 16 14 C -0.08 -1.75 10.01 -39.60 -0.40 -2.14 16 15 C -0.20 -5.19 7.90 -38.89 -0.31 -5.50 16 16 C 0.12 3.39 5.12 -106.54 -0.54 2.85 16 17 C -0.47 -13.37 7.51 -37.81 -0.28 -13.65 16 18 H 0.10 2.98 6.15 -52.49 -0.32 2.66 16 19 C 0.03 0.84 5.03 -17.30 -0.09 0.76 16 20 N -0.80 -22.22 12.71 55.56 0.71 -21.51 16 21 Si 1.07 23.42 29.98 -169.99 -5.10 18.32 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 25 O -0.38 -4.74 10.50 -63.57 -0.67 -5.41 16 26 C 0.02 0.17 9.66 101.05 0.98 1.15 16 27 H 0.04 0.27 8.13 -51.93 -0.42 -0.16 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.41 4.44 -51.93 -0.23 0.18 16 30 H 0.07 0.48 7.61 -51.93 -0.40 0.09 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.39 7.02 6.54 -40.82 -0.27 6.76 16 38 H 0.09 1.81 6.45 -52.49 -0.34 1.47 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 41 H 0.10 2.74 7.12 -52.48 -0.37 2.36 16 42 H 0.30 8.51 6.60 -40.82 -0.27 8.24 16 43 H 0.04 0.25 7.74 -51.93 -0.40 -0.15 16 44 H 0.05 0.45 6.04 -51.93 -0.31 0.14 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -34.79 372.64 -7.80 -42.59 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.36 Total: 10.83 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.51 Total: -9.55 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.37 Total: -36.29 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -1.82 Total: -31.51 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.10 Total: 18.32 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.79 -7.80 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867656563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.691 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds