Wall clock time and date at job start Tue Mar 31 2020 14:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99691 * 2 1 4 4 C 1.53000 * 109.47087 * 199.90626 * 3 2 1 5 5 O 1.42902 * 109.47322 * 300.00270 * 4 3 2 6 6 C 1.42900 * 114.00334 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47137 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46907 * 65.00175 * 7 6 5 9 9 C 1.34782 * 120.00055 * 180.02562 * 8 7 6 10 10 O 1.21611 * 119.99667 * 359.97438 * 9 8 7 11 11 C 1.47429 * 120.00295 * 179.97438 * 9 8 7 12 12 C 1.39228 * 120.28078 * 353.58302 * 11 9 8 13 13 C 1.38224 * 120.09195 * 180.27605 * 12 11 9 14 14 C 1.38829 * 120.67222 * 359.69710 * 13 12 11 15 15 C 1.37594 * 120.57158 * 359.97438 * 14 13 12 16 16 C 1.40704 * 119.88348 * 0.02562 * 15 14 13 17 17 C 1.40890 * 120.32919 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99819 * 143.65716 * 17 16 15 19 19 C 1.40272 * 120.00083 * 323.66291 * 17 16 15 20 20 N 1.30631 * 119.99895 * 340.35401 * 19 17 16 21 21 Si 1.86797 * 119.99945 * 160.35495 * 19 17 16 22 22 H 1.48499 * 109.47127 * 269.99967 * 21 19 17 23 23 H 1.48498 * 109.47115 * 30.00283 * 21 19 17 24 24 H 1.48508 * 109.47001 * 150.00068 * 21 19 17 25 25 O 1.42900 * 109.47111 * 79.90703 * 3 2 1 26 26 C 1.42899 * 113.99782 * 286.67018 * 25 3 2 27 27 H 1.08994 * 109.47439 * 62.68285 * 1 2 3 28 28 H 1.09005 * 109.46747 * 182.68901 * 1 2 3 29 29 H 1.09001 * 109.46930 * 302.68642 * 1 2 3 30 30 H 1.09003 * 109.47079 * 319.90365 * 3 2 1 31 31 H 1.08995 * 109.47468 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47154 * 59.99656 * 4 3 2 33 33 H 1.08996 * 109.46813 * 59.99744 * 6 5 4 34 34 H 1.08999 * 109.46627 * 299.99738 * 6 5 4 35 35 H 1.08998 * 109.47316 * 305.00260 * 7 6 5 36 36 H 1.08994 * 109.47146 * 184.99939 * 7 6 5 37 37 H 0.96998 * 120.00537 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.95398 * 359.97438 * 12 11 9 39 39 H 1.07997 * 119.66505 * 179.71082 * 13 12 11 40 40 H 1.07997 * 119.71238 * 180.02562 * 14 13 12 41 41 H 1.08004 * 120.05765 * 180.02562 * 15 14 13 42 42 H 0.96995 * 120.00213 * 356.61791 * 20 19 17 43 43 H 1.08998 * 109.47392 * 320.26820 * 26 25 3 44 44 H 1.09005 * 109.46588 * 80.26808 * 26 25 3 45 45 H 1.09003 * 109.47056 * 200.26302 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4567 1.2198 -0.4911 5 8 4.2046 0.3654 0.3765 6 6 5.5761 0.2159 0.0044 7 6 6.2757 -0.7138 0.9979 8 7 5.6987 -2.0568 0.8994 9 6 6.1615 -3.0485 1.6862 10 8 7.0583 -2.8285 2.4775 11 6 5.5805 -4.3999 1.5874 12 6 4.4676 -4.6286 0.7827 13 6 3.9226 -5.8960 0.6975 14 6 4.4775 -6.9544 1.4039 15 6 5.5814 -6.7609 2.2021 16 6 6.1554 -5.4805 2.3062 17 6 7.2855 -5.2716 3.1212 18 1 8.0521 -4.5760 2.8133 19 6 7.4150 -5.9671 4.3324 20 7 6.3630 -6.4977 4.8966 21 14 9.0917 -6.1347 5.1386 22 1 9.7568 -7.3677 4.6461 23 1 9.9247 -4.9533 4.7985 24 1 8.9265 -6.2162 6.6122 25 8 1.9882 1.8367 1.3264 26 6 0.6909 2.2398 1.7696 27 1 -0.3634 0.4716 -0.9130 28 1 -0.3633 -1.0266 0.0482 29 1 -0.3633 0.5550 0.8649 30 1 1.4398 1.9571 -0.6619 31 1 3.9002 2.2155 -0.4907 32 1 3.4735 0.8146 -1.5029 33 1 6.0636 1.1907 0.0143 34 1 5.6364 -0.2104 -0.9970 35 1 6.1390 -0.3330 2.0100 36 1 7.3399 -0.7578 0.7669 37 1 4.9831 -2.2322 0.2685 38 1 4.0265 -3.8135 0.2281 39 1 3.0564 -6.0646 0.0748 40 1 4.0393 -7.9384 1.3257 41 1 6.0066 -7.5904 2.7477 42 1 5.4854 -6.3691 4.5041 43 1 0.1602 2.7225 0.9489 44 1 0.1313 1.3643 2.0991 45 1 0.7915 2.9399 2.5990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867656563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:12 Heat of formation + Delta-G solvation = -175.167479 kcal Electronic energy + Delta-G solvation = -27456.498515 eV Core-core repulsion = 23438.382339 eV Total energy + Delta-G solvation = -4018.116177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.82044 -40.36487 -39.02808 -38.41956 -36.94190 -36.00110 -35.34948 -32.30853 -31.47255 -31.10228 -29.59405 -27.59150 -27.04735 -26.87794 -24.57863 -23.35045 -23.29973 -22.60661 -21.22286 -19.91531 -18.64667 -18.51482 -18.19659 -17.28073 -17.19521 -16.97396 -16.49770 -16.22230 -15.98263 -15.72636 -15.56182 -15.39022 -15.27497 -15.05496 -14.46096 -14.41322 -14.10493 -14.08084 -13.89412 -13.51548 -13.35452 -13.09142 -12.88573 -12.67595 -12.48815 -12.36437 -12.24849 -12.10307 -12.03845 -11.92788 -11.43562 -10.97991 -10.91838 -10.73268 -10.61824 -10.35645 -9.97599 -9.59316 -9.46697 -9.10252 -6.44222 0.41077 0.90882 1.46425 1.62712 1.77944 2.26113 2.32937 2.45300 2.61210 2.65202 2.76051 2.80903 3.56051 3.74246 3.85168 4.14086 4.20512 4.21411 4.25595 4.28790 4.31388 4.41246 4.43926 4.46461 4.47916 4.51064 4.52386 4.66361 4.73320 4.76449 4.88368 4.92792 4.94002 5.14168 5.43572 5.61085 5.66881 5.72593 5.89475 5.96198 6.00464 6.09511 6.21810 6.30725 6.34188 6.70660 6.87023 6.93534 7.61969 8.06676 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.003059 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.992272 B = 9150.256305 C = 9898.160480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.412 6.412 3 C 0.237 3.763 4 C 0.070 3.930 5 O -0.396 6.396 6 C 0.060 3.940 7 C 0.124 3.876 8 N -0.722 5.722 9 C 0.555 3.445 10 O -0.581 6.581 11 C -0.281 4.281 12 C -0.042 4.042 13 C -0.242 4.242 14 C -0.071 4.071 15 C -0.223 4.223 16 C 0.098 3.902 17 C -0.511 4.511 18 H 0.075 0.925 19 C -0.004 4.004 20 N -0.820 5.820 21 Si 1.120 2.880 22 H -0.253 1.253 23 H -0.275 1.275 24 H -0.268 1.268 25 O -0.414 6.414 26 C 0.014 3.986 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.405 0.595 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.090 0.910 42 H 0.280 0.720 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.315 16.832 -13.777 24.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.333 6.333 3 C 0.142 3.858 4 C -0.006 4.006 5 O -0.316 6.316 6 C -0.016 4.016 7 C 0.000 4.000 8 N -0.376 5.376 9 C 0.348 3.652 10 O -0.463 6.463 11 C -0.286 4.286 12 C -0.061 4.061 13 C -0.260 4.260 14 C -0.090 4.090 15 C -0.243 4.243 16 C 0.094 3.906 17 C -0.540 4.540 18 H 0.093 0.907 19 C -0.218 4.218 20 N -0.445 5.445 21 Si 0.937 3.063 22 H -0.177 1.177 23 H -0.200 1.200 24 H -0.193 1.193 25 O -0.335 6.335 26 C -0.081 4.081 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.242 0.758 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.753 16.112 -11.641 22.141 hybrid contribution -1.615 0.770 -1.515 2.344 sum -11.368 16.882 -13.156 24.234 Atomic orbital electron populations 1.23362 0.79890 1.04243 1.01714 1.88136 1.21345 1.29960 1.93889 1.23875 0.94539 0.82985 0.84425 1.22791 0.88017 0.95775 0.94012 1.88104 1.21711 1.68686 1.53097 1.22773 0.82137 0.99391 0.97306 1.21340 0.97462 0.81477 0.99730 1.45727 1.40688 1.09268 1.41936 1.18470 0.81768 0.85318 0.79682 1.90661 1.32477 1.84087 1.39059 1.19873 1.03182 0.92515 1.13007 1.21127 0.92989 0.97352 0.94630 1.20805 1.04677 0.92849 1.07713 1.21159 0.94187 0.99161 0.94449 1.21207 1.01639 0.95746 1.05662 1.17898 0.90899 0.90905 0.90921 1.20974 1.05494 1.21965 1.05534 0.90676 1.28484 1.07841 0.89878 0.95638 1.70481 1.01123 1.34679 1.38181 0.82967 0.69099 0.78282 0.75913 1.17721 1.20019 1.19261 1.88118 1.30904 1.80591 1.33891 1.23220 0.84210 0.99646 1.01022 0.91600 0.89380 0.92362 0.88086 0.89153 0.89153 0.89050 0.90569 0.93687 0.90223 0.75809 0.85429 0.84579 0.85486 0.89167 0.90746 0.91286 0.93518 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 10.62 113.37 1.20 1.26 16 2 O -0.41 -9.74 10.48 -121.88 -1.28 -11.02 16 3 C 0.24 4.48 3.20 71.98 0.23 4.71 16 4 C 0.07 1.24 6.03 71.98 0.43 1.67 16 5 O -0.40 -10.51 10.07 -129.37 -1.30 -11.81 16 6 C 0.06 1.32 6.07 71.98 0.44 1.75 16 7 C 0.12 3.97 6.06 86.38 0.52 4.49 16 8 N -0.72 -27.82 5.45 -466.36 -2.54 -30.37 16 9 C 0.55 28.12 7.71 86.66 0.67 28.79 16 10 O -0.58 -34.06 13.66 -4.06 -0.06 -34.12 16 11 C -0.28 -14.59 5.92 -19.70 -0.12 -14.71 16 12 C -0.04 -1.81 9.51 22.50 0.21 -1.60 16 13 C -0.24 -9.73 10.03 22.41 0.22 -9.51 16 14 C -0.07 -3.11 10.01 22.26 0.22 -2.89 16 15 C -0.22 -11.72 7.90 22.72 0.18 -11.54 16 16 C 0.10 5.60 5.12 -21.11 -0.11 5.49 16 17 C -0.51 -30.89 7.51 23.41 0.18 -30.72 16 18 H 0.08 4.80 6.15 -2.91 -0.02 4.78 16 19 C 0.00 -0.22 5.03 85.37 0.43 0.21 16 20 N -0.82 -47.84 12.71 21.88 0.28 -47.56 16 21 Si 1.12 49.09 29.98 68.60 2.06 51.15 16 22 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 O -0.41 -9.74 10.50 -121.88 -1.28 -11.02 16 26 C 0.01 0.22 9.66 113.37 1.10 1.32 16 27 H 0.07 0.66 8.13 -2.39 -0.02 0.64 16 28 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.06 0.81 4.44 -2.39 -0.01 0.80 16 30 H 0.10 1.11 7.61 -2.39 -0.02 1.10 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.41 13.69 6.54 -92.71 -0.61 13.09 16 38 H 0.13 4.51 6.45 -2.91 -0.02 4.49 16 39 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 40 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 41 H 0.09 4.91 7.12 -2.91 -0.02 4.89 16 42 H 0.28 16.92 6.60 -92.71 -0.61 16.31 16 43 H 0.07 0.64 7.74 -2.39 -0.02 0.62 16 44 H 0.05 0.75 6.04 -2.38 -0.01 0.74 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -81.22 372.64 2.25 -78.97 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.56 Total: 37.05 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 5.81 Total: -21.26 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -2.26 Total: -77.93 kcal Atomic # 8 Polarization: -64.06 SS G_CDS: -3.92 Total: -67.98 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.06 Total: 51.15 kcal Total: -81.22 2.25 -78.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867656563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.201 kcal (2) G-P(sol) polarization free energy of solvation -81.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds