Wall clock time and date at job start Tue Mar 31 2020 13:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45197 * 109.47156 * 2 1 4 4 C 1.34231 * 117.00141 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99873 * 0.02562 * 4 3 2 6 6 C 1.50709 * 120.00048 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.46898 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.47179 * 55.00391 * 7 6 4 9 9 C 1.50704 * 109.46692 * 175.00286 * 7 6 4 10 10 H 1.08001 * 119.99714 * 239.99463 * 9 7 6 11 11 C 1.37879 * 120.00283 * 59.99723 * 9 7 6 12 12 N 1.31512 * 119.99758 * 359.97438 * 11 9 7 13 13 Si 1.86794 * 119.99931 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47450 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46958 * 120.00333 * 13 11 9 16 16 H 1.48505 * 109.47436 * 240.00191 * 13 11 9 17 17 O 1.45198 * 109.47313 * 294.99775 * 7 6 4 18 18 C 1.34784 * 117.00048 * 149.99966 * 17 7 6 19 19 O 1.21545 * 120.00061 * 0.02562 * 18 17 7 20 20 C 1.47116 * 119.99885 * 180.02562 * 18 17 7 21 21 C 1.46742 * 127.02236 * 0.28709 * 20 18 17 22 22 C 1.34435 * 106.37098 * 180.15643 * 21 20 18 23 23 N 1.36432 * 109.08340 * 359.60222 * 22 21 20 24 24 H 0.97006 * 124.80633 * 180.26752 * 23 22 21 25 25 C 1.34623 * 110.38395 * 0.26671 * 23 22 21 26 26 C 1.50698 * 125.89953 * 179.97438 * 25 23 22 27 27 C 1.52992 * 109.46930 * 300.02619 * 26 25 23 28 28 C 1.53005 * 109.46980 * 60.02378 * 26 25 23 29 29 H 1.09003 * 109.47093 * 60.00528 * 1 2 3 30 30 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47356 * 300.00064 * 1 2 3 32 32 H 1.09001 * 109.47356 * 239.99936 * 2 1 3 33 33 H 1.08995 * 109.47036 * 120.00132 * 2 1 3 34 34 H 1.09005 * 109.46922 * 59.99891 * 6 4 3 35 35 H 1.09003 * 109.46654 * 300.00388 * 6 4 3 36 36 H 0.97008 * 119.99763 * 179.97438 * 12 11 9 37 37 H 1.07995 * 126.81547 * 0.02608 * 21 20 18 38 38 H 1.08002 * 125.46046 * 179.87165 * 22 21 20 39 39 H 1.08996 * 109.47537 * 180.02562 * 26 25 23 40 40 H 1.09001 * 109.47665 * 59.99821 * 27 26 25 41 41 H 1.09007 * 109.46963 * 180.02562 * 27 26 25 42 42 H 1.09005 * 109.47426 * 299.99351 * 27 26 25 43 43 H 1.08996 * 109.47152 * 60.00337 * 28 26 25 44 44 H 1.09000 * 109.47001 * 180.02562 * 28 26 25 45 45 H 1.09001 * 109.46972 * 299.99785 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8574 0.0001 8 1 5.7806 2.2494 -0.8414 9 6 6.0243 4.2446 -0.1242 10 1 6.6592 4.4926 -0.9619 11 6 5.7405 5.1970 0.8315 12 7 4.9670 4.8950 1.8514 13 14 6.4547 6.9161 0.6777 14 1 7.2852 6.9992 -0.5505 15 1 5.3502 7.9054 0.5957 16 1 7.2959 7.2109 1.8655 17 8 5.9016 2.2549 1.2411 18 6 7.0509 1.5522 1.1964 19 8 7.6581 1.4464 0.1488 20 6 7.5704 0.9133 2.4155 21 6 6.9646 0.9363 3.7519 22 6 7.7820 0.2284 4.5506 23 7 8.8337 -0.2345 3.8150 24 1 9.5586 -0.7757 4.1649 25 6 8.7228 0.1664 2.5346 26 6 9.6914 -0.1468 1.4235 27 6 11.0718 0.4094 1.7785 28 6 9.7843 -1.6630 1.2402 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.5843 3.4702 0.8895 35 1 3.5851 3.4691 -0.8905 36 1 4.7677 5.5650 2.5240 37 1 6.0458 1.4265 4.0376 38 1 7.6284 0.0505 5.6047 39 1 9.3426 0.3104 0.4976 40 1 11.4207 -0.0478 2.7044 41 1 11.7724 0.1832 0.9746 42 1 11.0057 1.4896 1.9090 43 1 8.8009 -2.0593 0.9873 44 1 10.4853 -1.8896 0.4369 45 1 10.1332 -2.1202 2.1661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870616553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:36 Heat of formation + Delta-G solvation = -146.826099 kcal Electronic energy + Delta-G solvation = -28385.494392 eV Core-core repulsion = 24368.607190 eV Total energy + Delta-G solvation = -4016.887202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85511 -39.70330 -38.33653 -36.06346 -35.21509 -34.70497 -32.88980 -31.52631 -30.73732 -29.99826 -28.16367 -27.07865 -26.18053 -23.65038 -22.95827 -21.67308 -21.26240 -20.09184 -19.65695 -18.65021 -17.31108 -17.05980 -16.32922 -16.08042 -15.62074 -15.25188 -14.67893 -14.52915 -14.41898 -14.35929 -13.89758 -13.79249 -13.66615 -12.92382 -12.75665 -12.67292 -12.63055 -12.46068 -12.19390 -12.14523 -11.81437 -11.62744 -11.38025 -11.19753 -11.06559 -10.99644 -10.92195 -10.77557 -10.66496 -10.58631 -10.11918 -10.06624 -9.60040 -9.29985 -9.00522 -8.64735 -8.58955 -8.36040 -7.77926 -6.14379 -4.30602 2.24687 2.90196 3.11137 3.23821 3.33591 3.38330 3.40509 3.44363 4.33021 4.36854 4.45145 4.86842 5.05671 5.13930 5.18692 5.22382 5.29614 5.35575 5.44284 5.54970 5.59875 5.61032 5.78587 5.83165 5.94605 5.96169 6.00146 6.07205 6.12404 6.15154 6.32038 6.35784 6.44636 6.50298 6.63514 6.75033 7.05803 7.12475 7.19819 7.39684 7.41371 7.76506 7.78864 8.07748 8.22519 8.60890 8.78019 9.36838 9.50268 10.88155 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008314 B = 0.005305 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3367.095289 B = 5276.953586 C = 7429.009018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.456 3.544 5 O -0.514 6.514 6 C -0.101 4.101 7 C 0.231 3.769 8 H 0.044 0.956 9 C -0.544 4.544 10 H 0.069 0.931 11 C 0.082 3.918 12 N -0.859 5.859 13 Si 0.895 3.105 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.282 1.282 17 O -0.323 6.323 18 C 0.540 3.460 19 O -0.543 6.543 20 C -0.199 4.199 21 C -0.136 4.136 22 C -0.040 4.040 23 N -0.551 5.551 24 H 0.410 0.590 25 C 0.102 3.898 26 C -0.051 4.051 27 C -0.142 4.142 28 C -0.141 4.141 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.102 0.898 36 H 0.265 0.735 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.127 0.873 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 -10.402 3.892 11.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.285 6.285 4 C 0.301 3.699 5 O -0.401 6.401 6 C -0.139 4.139 7 C 0.178 3.822 8 H 0.062 0.938 9 C -0.581 4.581 10 H 0.087 0.913 11 C -0.125 4.125 12 N -0.495 5.495 13 Si 0.722 3.278 14 H -0.195 1.195 15 H -0.206 1.206 16 H -0.207 1.207 17 O -0.237 6.237 18 C 0.386 3.614 19 O -0.437 6.437 20 C -0.207 4.207 21 C -0.160 4.160 22 C -0.166 4.166 23 N -0.147 5.147 24 H 0.245 0.755 25 C -0.015 4.015 26 C -0.070 4.070 27 C -0.200 4.200 28 C -0.199 4.199 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.167 0.833 38 H 0.182 0.818 39 H 0.145 0.855 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.479 -10.709 3.825 11.468 hybrid contribution 0.610 0.558 0.360 0.902 sum 2.088 -10.151 4.185 11.177 Atomic orbital electron populations 1.21775 0.93368 1.02248 1.03298 1.22838 0.94777 0.81936 1.02002 1.86578 1.26249 1.30853 1.84826 1.24951 0.79408 0.94387 0.71201 1.90603 1.60175 1.43634 1.45710 1.21881 0.96898 0.88003 1.07104 1.19994 0.87845 0.92489 0.81859 0.93761 1.21405 1.32130 0.94362 1.10205 0.91296 1.25086 0.93914 0.98975 0.94511 1.69883 1.34568 1.34188 1.10862 0.86486 0.79169 0.83674 0.78450 1.19464 1.20621 1.20744 1.86658 1.36461 1.59620 1.40956 1.19760 0.80131 0.75163 0.86297 1.90594 1.59372 1.61314 1.32450 1.19869 0.98264 1.08777 0.93829 1.22165 1.00541 1.01719 0.91546 1.21599 0.91300 1.06182 0.97530 1.41354 1.21947 1.43459 1.07908 0.75465 1.20397 0.96924 0.98923 0.85257 1.20204 0.92687 0.96630 0.97457 1.21819 0.95696 1.01686 1.00751 1.21816 1.02293 0.94739 1.01048 0.91736 0.90921 0.91610 0.91940 0.91786 0.84240 0.88008 0.92473 0.83320 0.81833 0.85480 0.93666 0.91963 0.92035 0.92163 0.91967 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.29 37.16 0.38 -1.30 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -7.01 10.22 -39.26 -0.40 -7.41 16 4 C 0.46 10.14 7.84 36.01 0.28 10.43 16 5 O -0.51 -12.62 15.17 -23.94 -0.36 -12.98 16 6 C -0.10 -2.37 5.23 -27.88 -0.15 -2.52 16 7 C 0.23 6.15 1.65 -27.88 -0.05 6.10 16 8 H 0.04 1.23 6.97 -51.93 -0.36 0.87 16 9 C -0.54 -15.03 8.92 -34.44 -0.31 -15.34 16 10 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 11 C 0.08 2.18 5.25 -17.82 -0.09 2.09 16 12 N -0.86 -23.12 10.93 55.43 0.61 -22.52 16 13 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 O -0.32 -8.75 8.43 -45.94 -0.39 -9.14 16 18 C 0.54 13.93 7.92 34.33 0.27 14.20 16 19 O -0.54 -14.56 13.79 -19.30 -0.27 -14.83 16 20 C -0.20 -4.29 6.33 -103.01 -0.65 -4.95 16 21 C -0.14 -2.55 11.00 -37.49 -0.41 -2.97 16 22 C -0.04 -0.57 11.87 -16.85 -0.20 -0.77 16 23 N -0.55 -7.41 5.89 -8.88 -0.05 -7.46 16 24 H 0.41 3.90 8.96 -40.82 -0.37 3.54 16 25 C 0.10 1.76 5.73 -81.51 -0.47 1.29 16 26 C -0.05 -0.78 3.25 -91.77 -0.30 -1.08 16 27 C -0.14 -1.80 9.17 37.15 0.34 -1.46 16 28 C -0.14 -1.76 9.18 37.16 0.34 -1.42 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 33 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.14 3.47 6.22 -51.93 -0.32 3.14 16 35 H 0.10 2.17 8.14 -51.93 -0.42 1.74 16 36 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 38 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.13 2.42 5.56 -51.93 -0.29 2.13 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -33.30 382.74 -7.69 -40.99 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.80 Total: 8.44 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.77 Total: 3.43 kcal Atomic # 7 Polarization: -30.53 SS G_CDS: 0.55 Total: -29.98 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -1.42 Total: -44.36 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.30 -7.69 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870616553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.833 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds