Wall clock time and date at job start Tue Mar 31 2020 13:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45197 * 109.47156 * 2 1 4 4 C 1.34231 * 117.00141 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99873 * 0.02562 * 4 3 2 6 6 C 1.50709 * 120.00048 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.46898 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.47179 * 55.00391 * 7 6 4 9 9 C 1.50704 * 109.46692 * 175.00286 * 7 6 4 10 10 H 1.08001 * 119.99714 * 239.99463 * 9 7 6 11 11 C 1.37879 * 120.00283 * 59.99723 * 9 7 6 12 12 N 1.31512 * 119.99758 * 359.97438 * 11 9 7 13 13 Si 1.86794 * 119.99931 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47450 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46958 * 120.00333 * 13 11 9 16 16 H 1.48505 * 109.47436 * 240.00191 * 13 11 9 17 17 O 1.45198 * 109.47313 * 294.99775 * 7 6 4 18 18 C 1.34784 * 117.00048 * 149.99966 * 17 7 6 19 19 O 1.21545 * 120.00061 * 0.02562 * 18 17 7 20 20 C 1.47116 * 119.99885 * 180.02562 * 18 17 7 21 21 C 1.46742 * 127.02236 * 0.28709 * 20 18 17 22 22 C 1.34435 * 106.37098 * 180.15643 * 21 20 18 23 23 N 1.36432 * 109.08340 * 359.60222 * 22 21 20 24 24 H 0.97006 * 124.80633 * 180.26752 * 23 22 21 25 25 C 1.34623 * 110.38395 * 0.26671 * 23 22 21 26 26 C 1.50698 * 125.89953 * 179.97438 * 25 23 22 27 27 C 1.52992 * 109.46930 * 300.02619 * 26 25 23 28 28 C 1.53005 * 109.46980 * 60.02378 * 26 25 23 29 29 H 1.09003 * 109.47093 * 60.00528 * 1 2 3 30 30 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47356 * 300.00064 * 1 2 3 32 32 H 1.09001 * 109.47356 * 239.99936 * 2 1 3 33 33 H 1.08995 * 109.47036 * 120.00132 * 2 1 3 34 34 H 1.09005 * 109.46922 * 59.99891 * 6 4 3 35 35 H 1.09003 * 109.46654 * 300.00388 * 6 4 3 36 36 H 0.97008 * 119.99763 * 179.97438 * 12 11 9 37 37 H 1.07995 * 126.81547 * 0.02608 * 21 20 18 38 38 H 1.08002 * 125.46046 * 179.87165 * 22 21 20 39 39 H 1.08996 * 109.47537 * 180.02562 * 26 25 23 40 40 H 1.09001 * 109.47665 * 59.99821 * 27 26 25 41 41 H 1.09007 * 109.46963 * 180.02562 * 27 26 25 42 42 H 1.09005 * 109.47426 * 299.99351 * 27 26 25 43 43 H 1.08996 * 109.47152 * 60.00337 * 28 26 25 44 44 H 1.09000 * 109.47001 * 180.02562 * 28 26 25 45 45 H 1.09001 * 109.46972 * 299.99785 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8574 0.0001 8 1 5.7806 2.2494 -0.8414 9 6 6.0243 4.2446 -0.1242 10 1 6.6592 4.4926 -0.9619 11 6 5.7405 5.1970 0.8315 12 7 4.9670 4.8950 1.8514 13 14 6.4547 6.9161 0.6777 14 1 7.2852 6.9992 -0.5505 15 1 5.3502 7.9054 0.5957 16 1 7.2959 7.2109 1.8655 17 8 5.9016 2.2549 1.2411 18 6 7.0509 1.5522 1.1964 19 8 7.6581 1.4464 0.1488 20 6 7.5704 0.9133 2.4155 21 6 6.9646 0.9363 3.7519 22 6 7.7820 0.2284 4.5506 23 7 8.8337 -0.2345 3.8150 24 1 9.5586 -0.7757 4.1649 25 6 8.7228 0.1664 2.5346 26 6 9.6914 -0.1468 1.4235 27 6 11.0718 0.4094 1.7785 28 6 9.7843 -1.6630 1.2402 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.5843 3.4702 0.8895 35 1 3.5851 3.4691 -0.8905 36 1 4.7677 5.5650 2.5240 37 1 6.0458 1.4265 4.0376 38 1 7.6284 0.0505 5.6047 39 1 9.3426 0.3104 0.4976 40 1 11.4207 -0.0478 2.7044 41 1 11.7724 0.1832 0.9746 42 1 11.0057 1.4896 1.9090 43 1 8.8009 -2.0593 0.9873 44 1 10.4853 -1.8896 0.4369 45 1 10.1332 -2.1202 2.1661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870616553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:35 Heat of formation + Delta-G solvation = -166.245607 kcal Electronic energy + Delta-G solvation = -28386.336485 eV Core-core repulsion = 24368.607190 eV Total energy + Delta-G solvation = -4017.729295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.21250 -41.46120 -40.26109 -37.79388 -36.99569 -36.06985 -34.94551 -32.92096 -32.26352 -31.68001 -29.48038 -28.18096 -28.07964 -25.39460 -24.33154 -23.18845 -22.65697 -21.60873 -21.34632 -20.35628 -19.02928 -18.65782 -18.12603 -17.70279 -17.35746 -17.12353 -16.53657 -16.27265 -16.07128 -15.57518 -15.23829 -15.22198 -15.04685 -14.52148 -14.23087 -14.01773 -13.90549 -13.78702 -13.68787 -13.38565 -13.27764 -13.06788 -12.95960 -12.85253 -12.75672 -12.59855 -12.46498 -12.16688 -12.12886 -12.05589 -11.86959 -11.53873 -11.47888 -11.35884 -10.90120 -10.71391 -10.63845 -9.77583 -9.12963 -8.20533 -6.46204 0.69830 1.29210 1.39526 1.42375 1.54256 1.55156 1.81162 2.14437 2.38321 2.60039 2.64723 3.16042 3.68126 3.93702 3.95285 4.00086 4.13015 4.19049 4.21156 4.34217 4.37753 4.47710 4.51210 4.53043 4.62089 4.70044 4.77890 4.86930 4.88137 4.93105 4.98165 5.03389 5.13374 5.14925 5.23094 5.32839 5.33344 5.40925 5.50126 5.67008 5.75693 5.97222 6.00114 6.25451 6.61446 6.69712 6.86655 7.28362 7.47901 8.82154 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008314 B = 0.005305 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3367.095289 B = 5276.953586 C = 7429.009018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 O -0.363 6.363 4 C 0.464 3.536 5 O -0.543 6.543 6 C -0.093 4.093 7 C 0.231 3.769 8 H 0.014 0.986 9 C -0.574 4.574 10 H 0.052 0.948 11 C 0.047 3.953 12 N -0.874 5.874 13 Si 0.959 3.041 14 H -0.274 1.274 15 H -0.261 1.261 16 H -0.280 1.280 17 O -0.337 6.337 18 C 0.523 3.477 19 O -0.573 6.573 20 C -0.263 4.263 21 C -0.180 4.180 22 C 0.005 3.995 23 N -0.524 5.524 24 H 0.436 0.564 25 C 0.120 3.880 26 C -0.056 4.056 27 C -0.135 4.135 28 C -0.134 4.134 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.119 0.881 36 H 0.272 0.728 37 H 0.132 0.868 38 H 0.219 0.781 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.079 0.921 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -11.620 6.217 13.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 O -0.280 6.280 4 C 0.310 3.690 5 O -0.433 6.433 6 C -0.131 4.131 7 C 0.177 3.823 8 H 0.032 0.968 9 C -0.611 4.611 10 H 0.071 0.929 11 C -0.159 4.159 12 N -0.510 5.510 13 Si 0.783 3.217 14 H -0.199 1.199 15 H -0.185 1.185 16 H -0.206 1.206 17 O -0.252 6.252 18 C 0.372 3.628 19 O -0.469 6.469 20 C -0.271 4.271 21 C -0.203 4.203 22 C -0.122 4.122 23 N -0.122 5.122 24 H 0.277 0.723 25 C 0.001 3.999 26 C -0.076 4.076 27 C -0.193 4.193 28 C -0.191 4.191 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.235 0.765 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.174 -11.948 6.177 13.625 hybrid contribution 0.377 0.811 -0.330 0.953 sum 2.551 -11.137 5.848 12.835 Atomic orbital electron populations 1.21804 0.89631 1.04485 1.03788 1.23295 0.97618 0.79698 1.01988 1.86543 1.23939 1.33548 1.84018 1.24545 0.80430 0.93422 0.70641 1.90590 1.61200 1.44311 1.47167 1.21654 0.95047 0.89109 1.07271 1.19914 0.89690 0.91593 0.81077 0.96795 1.21460 1.33325 0.95500 1.10769 0.92939 1.25721 0.93997 1.02307 0.93830 1.69968 1.34567 1.35427 1.10999 0.85512 0.78819 0.79357 0.77998 1.19890 1.18545 1.20574 1.86642 1.37463 1.60237 1.40859 1.20658 0.79487 0.74889 0.87801 1.90554 1.59907 1.62543 1.33911 1.19963 1.01385 1.12256 0.93499 1.22154 1.01787 1.04896 0.91465 1.22188 0.88989 1.02149 0.98867 1.41314 1.22287 1.42306 1.06244 0.72270 1.20521 0.95445 0.96904 0.87076 1.20209 0.93648 0.98751 0.94961 1.21784 0.94115 1.00236 1.03120 1.21776 1.01790 0.92087 1.03487 0.91027 0.87750 0.91326 0.91722 0.92211 0.85387 0.86338 0.91884 0.85019 0.76474 0.90081 0.90230 0.90222 0.94374 0.94291 0.90234 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 10.29 71.98 0.74 -2.14 16 2 C 0.05 1.44 6.19 71.98 0.45 1.89 16 3 O -0.36 -14.11 10.22 -51.42 -0.53 -14.63 16 4 C 0.46 21.68 7.84 71.24 0.56 22.24 16 5 O -0.54 -28.30 15.17 26.95 0.41 -27.89 16 6 C -0.09 -4.63 5.23 29.85 0.16 -4.47 16 7 C 0.23 13.20 1.65 29.85 0.05 13.25 16 8 H 0.01 0.85 6.97 -2.39 -0.02 0.84 16 9 C -0.57 -33.65 8.92 25.60 0.23 -33.42 16 10 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 11 C 0.05 2.58 5.25 84.66 0.44 3.02 16 12 N -0.87 -48.39 10.93 21.45 0.23 -48.15 16 13 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 15 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 17 O -0.34 -19.73 8.43 -51.95 -0.44 -20.17 16 18 C 0.52 29.19 7.92 70.15 0.56 29.74 16 19 O -0.57 -33.64 13.79 19.69 0.27 -33.37 16 20 C -0.26 -11.88 6.33 -18.82 -0.12 -12.00 16 21 C -0.18 -6.86 11.00 23.62 0.26 -6.60 16 22 C 0.01 0.13 11.87 83.11 0.99 1.12 16 23 N -0.52 -12.32 5.89 -182.02 -1.07 -13.39 16 24 H 0.44 5.93 8.96 -92.70 -0.83 5.10 16 25 C 0.12 4.10 5.73 42.04 0.24 4.35 16 26 C -0.06 -1.73 3.25 -11.54 -0.04 -1.76 16 27 C -0.14 -3.18 9.17 71.98 0.66 -2.52 16 28 C -0.13 -3.09 9.18 71.98 0.66 -2.43 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 33 H 0.06 1.86 8.13 -2.39 -0.02 1.84 16 34 H 0.13 6.68 6.22 -2.38 -0.01 6.67 16 35 H 0.12 5.31 8.14 -2.39 -0.02 5.29 16 36 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 37 H 0.13 5.33 8.06 -2.91 -0.02 5.31 16 38 H 0.22 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.08 3.30 5.56 -2.39 -0.01 3.29 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.04 1.06 8.14 -2.38 -0.02 1.05 16 43 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -80.95 382.74 6.91 -74.04 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.17 Total: 27.90 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 5.83 Total: 10.28 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.84 Total: -61.55 kcal Atomic # 8 Polarization: -95.78 SS G_CDS: -0.28 Total: -96.06 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -80.95 6.91 -74.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870616553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.203 kcal (2) G-P(sol) polarization free energy of solvation -80.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds