Wall clock time and date at job start Tue Mar 31 2020 13:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46897 * 2 1 4 4 C 1.34232 * 116.99356 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00558 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99540 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46798 * 180.02562 * 6 4 3 8 8 H 1.09006 * 109.47184 * 55.00369 * 7 6 4 9 9 C 1.50702 * 109.47076 * 174.99720 * 7 6 4 10 10 H 1.07999 * 120.00313 * 240.00313 * 9 7 6 11 11 C 1.37878 * 119.99522 * 60.00024 * 9 7 6 12 12 N 1.31514 * 120.00284 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99816 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47681 * 89.99802 * 13 11 9 15 15 H 1.48507 * 109.47153 * 210.00212 * 13 11 9 16 16 H 1.48503 * 109.47142 * 329.99569 * 13 11 9 17 17 O 1.45195 * 109.47345 * 295.00173 * 7 6 4 18 18 C 1.34886 * 117.00380 * 150.00525 * 17 7 6 19 19 O 1.21625 * 119.99975 * 359.97438 * 18 17 7 20 20 C 1.46496 * 120.00314 * 179.97438 * 18 17 7 21 21 C 1.37990 * 126.26359 * 180.02562 * 20 18 17 22 22 C 1.39805 * 106.96497 * 179.97438 * 21 20 18 23 23 C 1.35481 * 107.84353 * 0.02562 * 22 21 20 24 24 N 1.34954 * 108.98753 * 0.02562 * 23 22 21 25 25 C 1.46501 * 125.63857 * 180.02562 * 24 23 22 26 26 C 1.52996 * 109.47068 * 299.97420 * 25 24 23 27 27 C 1.53004 * 109.47145 * 59.97213 * 25 24 23 28 28 H 1.09003 * 109.47210 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46896 * 299.99645 * 1 2 3 30 30 H 1.08992 * 109.47364 * 59.99645 * 1 2 3 31 31 H 1.09002 * 109.46896 * 240.00355 * 2 1 3 32 32 H 1.09001 * 109.47235 * 120.00238 * 2 1 3 33 33 H 1.08993 * 109.47038 * 60.00544 * 6 4 3 34 34 H 1.09001 * 109.46902 * 299.99675 * 6 4 3 35 35 H 0.97000 * 120.00059 * 179.97438 * 12 11 9 36 36 H 1.07994 * 126.52024 * 0.26103 * 21 20 18 37 37 H 1.07997 * 126.07674 * 179.97438 * 22 21 20 38 38 H 1.07999 * 125.50523 * 180.02562 * 23 22 21 39 39 H 1.09001 * 109.47521 * 179.97438 * 25 24 23 40 40 H 1.09001 * 109.47023 * 59.99605 * 26 25 24 41 41 H 1.08998 * 109.47353 * 179.97438 * 26 25 24 42 42 H 1.09000 * 109.47224 * 299.99758 * 26 25 24 43 43 H 1.08996 * 109.46693 * 60.00510 * 27 25 24 44 44 H 1.08998 * 109.47062 * 179.97438 * 27 25 24 45 45 H 1.09001 * 109.47006 * 300.00432 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4487 2.8572 0.0010 8 1 5.7806 2.2500 -0.8412 9 6 6.0244 4.2444 -0.1222 10 1 6.6591 4.4932 -0.9599 11 6 5.7408 5.1960 0.8344 12 7 4.9675 4.8932 1.8541 13 14 6.4539 6.9157 0.6813 14 1 5.5189 7.7725 -0.0914 15 1 6.6497 7.4928 2.0355 16 1 7.7602 6.8492 -0.0220 17 8 5.9018 2.2535 1.2414 18 6 7.0520 1.5504 1.1959 19 8 7.6591 1.4448 0.1473 20 6 7.5700 0.9140 2.4094 21 6 8.7273 0.1692 2.5102 22 6 8.8335 -0.2414 3.8423 23 6 7.7638 0.2483 4.5142 24 7 6.9907 0.9488 3.6582 25 6 5.7425 1.6349 4.0011 26 6 4.7322 0.6182 4.5364 27 6 6.0190 2.6916 5.0725 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.5846 3.4692 0.8912 34 1 3.5851 3.4697 -0.8888 35 1 4.7683 5.5626 2.5273 36 1 9.4217 -0.0504 1.7128 37 1 9.6267 -0.8429 4.2611 38 1 7.5623 0.1017 5.5651 39 1 5.3364 2.1168 3.1117 40 1 5.1382 0.1363 5.4258 41 1 3.8037 1.1286 4.7920 42 1 4.5351 -0.1346 3.7732 43 1 6.7387 3.4159 4.6911 44 1 5.0904 3.2023 5.3273 45 1 6.4251 2.2097 5.9619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870618258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:30 Heat of formation + Delta-G solvation = -135.608421 kcal Electronic energy + Delta-G solvation = -29309.907814 eV Core-core repulsion = 25293.507047 eV Total energy + Delta-G solvation = -4016.400767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97519 -39.84550 -38.52268 -36.22063 -35.41369 -34.73386 -33.09058 -31.63414 -30.41722 -29.44297 -28.77808 -27.04211 -26.31115 -23.55973 -22.90124 -22.14298 -21.34683 -19.85139 -19.81614 -18.74595 -17.30716 -17.04548 -16.47660 -16.19539 -15.70233 -15.43479 -14.92316 -14.64674 -14.47654 -14.26906 -13.93759 -13.83637 -13.58377 -13.02584 -12.78556 -12.45524 -12.38977 -12.34286 -12.08349 -12.00138 -11.91340 -11.74453 -11.69731 -11.54378 -11.31714 -11.06681 -11.01746 -10.92496 -10.83293 -10.51861 -10.25460 -10.18659 -9.75197 -9.45276 -9.41558 -8.82992 -8.77245 -8.30882 -7.75213 -6.31205 -4.46059 2.06431 2.95956 3.15054 3.19236 3.24423 3.25778 3.27078 3.32064 3.95517 4.14868 4.24196 5.00905 5.03183 5.04564 5.11310 5.23947 5.27201 5.34573 5.43480 5.52529 5.65608 5.70395 5.71866 5.85595 5.87117 5.90212 5.99948 6.00547 6.05452 6.18007 6.28100 6.38902 6.45944 6.52083 6.57416 6.65648 6.94400 7.02972 7.21550 7.24129 7.51688 7.63405 7.72017 7.89588 7.94573 8.46198 8.62098 9.09932 9.30569 10.71552 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.007860 B = 0.006741 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3561.358841 B = 4152.900422 C = 6017.106121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.454 3.546 5 O -0.514 6.514 6 C -0.102 4.102 7 C 0.230 3.770 8 H 0.047 0.953 9 C -0.542 4.542 10 H 0.070 0.930 11 C 0.084 3.916 12 N -0.863 5.863 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.271 1.271 17 O -0.333 6.333 18 C 0.535 3.465 19 O -0.520 6.520 20 C -0.020 4.020 21 C -0.126 4.126 22 C -0.220 4.220 23 C 0.009 3.991 24 N -0.399 5.399 25 C 0.104 3.896 26 C -0.156 4.156 27 C -0.149 4.149 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.266 0.734 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.159 0.841 39 H 0.147 0.853 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 -6.668 6.255 10.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.299 3.701 5 O -0.401 6.401 6 C -0.139 4.139 7 C 0.178 3.822 8 H 0.065 0.935 9 C -0.579 4.579 10 H 0.088 0.912 11 C -0.123 4.123 12 N -0.499 5.499 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.196 1.196 17 O -0.248 6.248 18 C 0.380 3.620 19 O -0.411 6.411 20 C -0.131 4.131 21 C -0.151 4.151 22 C -0.244 4.244 23 C -0.127 4.127 24 N -0.073 5.073 25 C 0.003 3.997 26 C -0.213 4.213 27 C -0.206 4.206 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.160 0.840 37 H 0.154 0.846 38 H 0.176 0.824 39 H 0.164 0.836 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.744 -6.702 6.132 10.748 hybrid contribution 0.432 0.731 0.047 0.851 sum -5.312 -5.971 6.179 10.102 Atomic orbital electron populations 1.21776 0.93261 1.02341 1.03324 1.22855 0.94858 0.81780 1.02034 1.86579 1.26110 1.30972 1.84743 1.24952 0.79514 0.94362 0.71306 1.90621 1.60189 1.43631 1.45687 1.21890 0.96658 0.88073 1.07306 1.20072 0.87939 0.92580 0.81645 0.93511 1.21385 1.32090 0.94203 1.10243 0.91195 1.25053 0.93746 0.99035 0.94444 1.69824 1.34618 1.34475 1.10972 0.86505 0.79967 0.83461 0.77679 1.20171 1.20929 1.19578 1.86578 1.36574 1.60075 1.41622 1.19538 0.80559 0.75734 0.86183 1.90755 1.59192 1.60214 1.30932 1.20017 0.98501 1.09943 0.84653 1.21193 0.96364 1.00290 0.97283 1.20690 1.00921 1.08769 0.94046 1.21639 0.94151 1.00695 0.96227 1.44306 1.18543 1.37315 1.07149 1.22068 0.81775 0.92885 1.02961 1.22114 0.98986 0.99221 1.01005 1.22022 1.03112 0.98428 0.97084 0.90841 0.91622 0.91678 0.91848 0.91834 0.84211 0.87800 0.92365 0.83955 0.84561 0.82394 0.83551 0.92622 0.90763 0.92107 0.91593 0.90681 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 37.16 0.38 -1.18 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -6.53 10.22 -39.26 -0.40 -6.93 16 4 C 0.45 9.44 7.84 36.01 0.28 9.72 16 5 O -0.51 -11.95 15.17 -23.95 -0.36 -12.31 16 6 C -0.10 -2.22 5.23 -27.88 -0.15 -2.36 16 7 C 0.23 5.76 1.65 -27.88 -0.05 5.72 16 8 H 0.05 1.25 6.98 -51.93 -0.36 0.89 16 9 C -0.54 -14.23 8.92 -34.44 -0.31 -14.54 16 10 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 11 C 0.08 2.09 5.25 -17.82 -0.09 2.00 16 12 N -0.86 -21.07 10.93 55.43 0.61 -20.46 16 13 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 O -0.33 -8.28 5.64 -46.24 -0.26 -8.54 16 18 C 0.54 13.47 7.89 34.06 0.27 13.74 16 19 O -0.52 -14.24 16.15 -19.36 -0.31 -14.55 16 20 C -0.02 -0.42 6.89 -81.99 -0.56 -0.99 16 21 C -0.13 -2.41 10.66 -39.09 -0.42 -2.82 16 22 C -0.22 -3.48 10.81 -39.98 -0.43 -3.91 16 23 C 0.01 0.14 10.24 -17.16 -0.18 -0.03 16 24 N -0.40 -7.33 2.62 -105.98 -0.28 -7.61 16 25 C 0.10 1.79 3.50 -67.93 -0.24 1.55 16 26 C -0.16 -2.20 9.23 37.16 0.34 -1.86 16 27 C -0.15 -2.25 9.23 37.16 0.34 -1.90 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 33 H 0.14 3.18 6.22 -51.93 -0.32 2.85 16 34 H 0.10 2.08 8.14 -51.93 -0.42 1.66 16 35 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 36 H 0.14 2.59 8.06 -52.49 -0.42 2.17 16 37 H 0.14 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.15 3.09 5.07 -51.93 -0.26 2.83 16 40 H 0.05 0.66 7.91 -51.93 -0.41 0.25 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -30.17 381.19 -7.67 -37.84 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.81 Total: 7.76 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.57 Total: 4.21 kcal Atomic # 7 Polarization: -28.39 SS G_CDS: 0.33 Total: -28.07 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.34 Total: -42.34 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.17 -7.67 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870618258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.771 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds