Wall clock time and date at job start Tue Mar 31 2020 13:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46897 * 2 1 4 4 C 1.34232 * 116.99356 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00558 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99540 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46798 * 180.02562 * 6 4 3 8 8 H 1.09006 * 109.47184 * 55.00369 * 7 6 4 9 9 C 1.50702 * 109.47076 * 174.99720 * 7 6 4 10 10 H 1.07999 * 120.00313 * 240.00313 * 9 7 6 11 11 C 1.37878 * 119.99522 * 60.00024 * 9 7 6 12 12 N 1.31514 * 120.00284 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99816 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47681 * 89.99802 * 13 11 9 15 15 H 1.48507 * 109.47153 * 210.00212 * 13 11 9 16 16 H 1.48503 * 109.47142 * 329.99569 * 13 11 9 17 17 O 1.45195 * 109.47345 * 295.00173 * 7 6 4 18 18 C 1.34886 * 117.00380 * 150.00525 * 17 7 6 19 19 O 1.21625 * 119.99975 * 359.97438 * 18 17 7 20 20 C 1.46496 * 120.00314 * 179.97438 * 18 17 7 21 21 C 1.37990 * 126.26359 * 180.02562 * 20 18 17 22 22 C 1.39805 * 106.96497 * 179.97438 * 21 20 18 23 23 C 1.35481 * 107.84353 * 0.02562 * 22 21 20 24 24 N 1.34954 * 108.98753 * 0.02562 * 23 22 21 25 25 C 1.46501 * 125.63857 * 180.02562 * 24 23 22 26 26 C 1.52996 * 109.47068 * 299.97420 * 25 24 23 27 27 C 1.53004 * 109.47145 * 59.97213 * 25 24 23 28 28 H 1.09003 * 109.47210 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46896 * 299.99645 * 1 2 3 30 30 H 1.08992 * 109.47364 * 59.99645 * 1 2 3 31 31 H 1.09002 * 109.46896 * 240.00355 * 2 1 3 32 32 H 1.09001 * 109.47235 * 120.00238 * 2 1 3 33 33 H 1.08993 * 109.47038 * 60.00544 * 6 4 3 34 34 H 1.09001 * 109.46902 * 299.99675 * 6 4 3 35 35 H 0.97000 * 120.00059 * 179.97438 * 12 11 9 36 36 H 1.07994 * 126.52024 * 0.26103 * 21 20 18 37 37 H 1.07997 * 126.07674 * 179.97438 * 22 21 20 38 38 H 1.07999 * 125.50523 * 180.02562 * 23 22 21 39 39 H 1.09001 * 109.47521 * 179.97438 * 25 24 23 40 40 H 1.09001 * 109.47023 * 59.99605 * 26 25 24 41 41 H 1.08998 * 109.47353 * 179.97438 * 26 25 24 42 42 H 1.09000 * 109.47224 * 299.99758 * 26 25 24 43 43 H 1.08996 * 109.46693 * 60.00510 * 27 25 24 44 44 H 1.08998 * 109.47062 * 179.97438 * 27 25 24 45 45 H 1.09001 * 109.47006 * 300.00432 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4487 2.8572 0.0010 8 1 5.7806 2.2500 -0.8412 9 6 6.0244 4.2444 -0.1222 10 1 6.6591 4.4932 -0.9599 11 6 5.7408 5.1960 0.8344 12 7 4.9675 4.8932 1.8541 13 14 6.4539 6.9157 0.6813 14 1 5.5189 7.7725 -0.0914 15 1 6.6497 7.4928 2.0355 16 1 7.7602 6.8492 -0.0220 17 8 5.9018 2.2535 1.2414 18 6 7.0520 1.5504 1.1959 19 8 7.6591 1.4448 0.1473 20 6 7.5700 0.9140 2.4094 21 6 8.7273 0.1692 2.5102 22 6 8.8335 -0.2414 3.8423 23 6 7.7638 0.2483 4.5142 24 7 6.9907 0.9488 3.6582 25 6 5.7425 1.6349 4.0011 26 6 4.7322 0.6182 4.5364 27 6 6.0190 2.6916 5.0725 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.5846 3.4692 0.8912 34 1 3.5851 3.4697 -0.8888 35 1 4.7683 5.5626 2.5273 36 1 9.4217 -0.0504 1.7128 37 1 9.6267 -0.8429 4.2611 38 1 7.5623 0.1017 5.5651 39 1 5.3364 2.1168 3.1117 40 1 5.1382 0.1363 5.4258 41 1 3.8037 1.1286 4.7920 42 1 4.5351 -0.1346 3.7732 43 1 6.7387 3.4159 4.6911 44 1 5.0904 3.2023 5.3273 45 1 6.4251 2.2097 5.9619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870618258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:29 Heat of formation + Delta-G solvation = -150.403031 kcal Electronic energy + Delta-G solvation = -29310.549356 eV Core-core repulsion = 25293.507047 eV Total energy + Delta-G solvation = -4017.042310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40980 -41.49531 -40.37722 -37.88030 -37.16490 -36.15908 -35.03336 -32.93962 -32.08314 -30.78387 -30.27031 -28.20225 -28.18099 -25.22514 -24.25608 -23.48986 -22.91645 -21.56440 -21.23676 -20.40256 -19.07415 -18.60682 -18.18260 -17.73032 -17.36717 -17.22603 -16.64692 -16.39201 -16.05093 -15.60228 -15.47461 -15.28682 -14.87264 -14.57917 -14.26048 -13.85443 -13.80858 -13.60917 -13.58783 -13.37048 -13.15408 -13.07541 -13.00065 -12.94911 -12.85543 -12.82321 -12.64786 -12.48451 -12.27001 -12.18320 -11.88165 -11.55964 -11.51030 -11.38067 -11.30068 -10.80723 -10.69981 -9.68231 -9.18563 -8.24860 -6.48347 0.46100 1.25902 1.38222 1.41806 1.50810 1.77745 1.86754 1.90096 2.20291 2.34522 2.40356 3.08567 3.75146 3.86545 3.95392 3.98358 4.03818 4.11259 4.22247 4.30198 4.32686 4.42640 4.45613 4.53917 4.57522 4.65172 4.72651 4.79691 4.85315 4.91622 4.95102 5.03890 5.11898 5.13395 5.23440 5.25823 5.28596 5.42666 5.47877 5.62597 5.85130 5.92606 6.00099 6.05639 6.46001 6.56287 6.83251 7.16494 7.31052 8.77363 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.007860 B = 0.006741 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3561.358841 B = 4152.900422 C = 6017.106121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.361 6.361 4 C 0.463 3.537 5 O -0.544 6.544 6 C -0.092 4.092 7 C 0.229 3.771 8 H 0.012 0.988 9 C -0.576 4.576 10 H 0.048 0.952 11 C 0.057 3.943 12 N -0.863 5.863 13 Si 0.952 3.048 14 H -0.261 1.261 15 H -0.274 1.274 16 H -0.287 1.287 17 O -0.328 6.328 18 C 0.521 3.479 19 O -0.565 6.565 20 C -0.079 4.079 21 C -0.127 4.127 22 C -0.217 4.217 23 C 0.036 3.964 24 N -0.400 5.400 25 C 0.096 3.904 26 C -0.145 4.145 27 C -0.139 4.139 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.134 0.866 34 H 0.118 0.882 35 H 0.274 0.726 36 H 0.138 0.862 37 H 0.176 0.824 38 H 0.210 0.790 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.086 0.914 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.779 -7.224 9.705 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 O -0.279 6.279 4 C 0.309 3.691 5 O -0.434 6.434 6 C -0.129 4.129 7 C 0.176 3.824 8 H 0.030 0.970 9 C -0.613 4.613 10 H 0.067 0.933 11 C -0.150 4.150 12 N -0.498 5.498 13 Si 0.777 3.223 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.212 1.212 17 O -0.243 6.243 18 C 0.369 3.631 19 O -0.459 6.459 20 C -0.190 4.190 21 C -0.153 4.153 22 C -0.240 4.240 23 C -0.102 4.102 24 N -0.074 5.074 25 C -0.004 4.004 26 C -0.202 4.202 27 C -0.196 4.196 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.193 0.807 38 H 0.227 0.773 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.104 0.896 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.956 -7.252 9.597 13.896 hybrid contribution 0.778 0.796 -0.950 1.464 sum -6.178 -6.457 8.647 12.435 Atomic orbital electron populations 1.21803 0.89668 1.04450 1.03827 1.23283 0.97576 0.79677 1.01951 1.86547 1.23896 1.33478 1.83956 1.24565 0.80459 0.93418 0.70678 1.90612 1.61216 1.44364 1.47198 1.21652 0.94563 0.89091 1.07596 1.19975 0.89888 0.91535 0.80976 0.96977 1.21376 1.33566 0.95463 1.10880 0.93340 1.25544 0.93908 1.01617 0.93936 1.69872 1.33900 1.35360 1.10661 0.85666 0.78738 0.79950 0.77933 1.18544 1.19887 1.21237 1.86634 1.36661 1.60053 1.40982 1.20317 0.80129 0.75330 0.87291 1.90695 1.60279 1.62125 1.32832 1.19817 1.00769 1.13326 0.85070 1.21488 0.95290 0.99370 0.99197 1.21124 1.02102 1.08682 0.92091 1.22523 0.92454 0.97440 0.97744 1.44448 1.19022 1.37562 1.06382 1.22089 0.82152 0.94285 1.01902 1.22052 0.98853 0.97987 1.01349 1.21958 1.03056 0.97300 0.97313 0.87875 0.91147 0.91129 0.91960 0.92069 0.84795 0.86421 0.91655 0.84384 0.80671 0.77346 0.88127 0.89280 0.89274 0.94281 0.94667 0.89561 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.29 71.98 0.74 -1.88 16 2 C 0.05 1.37 6.19 71.98 0.45 1.81 16 3 O -0.36 -12.96 10.22 -51.43 -0.53 -13.48 16 4 C 0.46 20.07 7.84 71.24 0.56 20.62 16 5 O -0.54 -26.72 15.17 26.94 0.41 -26.32 16 6 C -0.09 -4.19 5.23 29.85 0.16 -4.04 16 7 C 0.23 12.34 1.65 29.85 0.05 12.39 16 8 H 0.01 0.72 6.98 -2.38 -0.02 0.70 16 9 C -0.58 -32.14 8.92 25.60 0.23 -31.91 16 10 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 11 C 0.06 2.90 5.25 84.65 0.44 3.35 16 12 N -0.86 -42.78 10.93 21.45 0.23 -42.55 16 13 Si 0.95 41.33 29.54 68.60 2.03 43.36 16 14 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 17 O -0.33 -17.47 5.64 -53.00 -0.30 -17.77 16 18 C 0.52 28.23 7.89 69.97 0.55 28.78 16 19 O -0.57 -33.75 16.15 19.43 0.31 -33.43 16 20 C -0.08 -3.55 6.89 40.32 0.28 -3.27 16 21 C -0.13 -4.88 10.66 22.59 0.24 -4.64 16 22 C -0.22 -6.18 10.81 22.01 0.24 -5.94 16 23 C 0.04 0.96 10.24 83.58 0.86 1.81 16 24 N -0.40 -14.29 2.62 -489.20 -1.28 -15.57 16 25 C 0.10 3.24 3.50 44.99 0.16 3.39 16 26 C -0.14 -3.74 9.23 71.98 0.66 -3.07 16 27 C -0.14 -3.87 9.23 71.98 0.66 -3.21 16 28 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 32 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 33 H 0.13 6.30 6.22 -2.39 -0.01 6.29 16 34 H 0.12 4.93 8.14 -2.39 -0.02 4.91 16 35 H 0.27 12.64 8.31 -92.71 -0.77 11.87 16 36 H 0.14 5.24 8.06 -2.91 -0.02 5.22 16 37 H 0.18 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.21 3.45 8.06 -2.91 -0.02 3.42 16 39 H 0.10 4.39 5.07 -2.39 -0.01 4.38 16 40 H 0.09 1.69 7.91 -2.39 -0.02 1.67 16 41 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.09 1.77 7.91 -2.39 -0.02 1.75 16 Total: -1.00 -72.40 381.19 8.13 -64.27 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.98 Total: 27.28 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.27 Total: 14.21 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -1.05 Total: -58.12 kcal Atomic # 8 Polarization: -90.90 SS G_CDS: -0.10 Total: -91.00 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -72.40 8.13 -64.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870618258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.134 kcal (2) G-P(sol) polarization free energy of solvation -72.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds