Wall clock time and date at job start Tue Mar 31 2020 13:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47351 * 2 1 4 4 C 1.34230 * 117.00462 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99547 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00034 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46791 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47186 * 54.99960 * 7 6 4 9 9 C 1.50699 * 109.46997 * 175.00306 * 7 6 4 10 10 H 1.08001 * 119.99824 * 239.99696 * 9 7 6 11 11 C 1.37883 * 120.00055 * 59.99783 * 9 7 6 12 12 N 1.31511 * 120.00196 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 119.99633 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47085 * 90.00245 * 13 11 9 15 15 H 1.48501 * 109.46579 * 209.99786 * 13 11 9 16 16 H 1.48497 * 109.47312 * 329.99980 * 13 11 9 17 17 O 1.45206 * 109.47185 * 294.99951 * 7 6 4 18 18 C 1.34782 * 116.99807 * 150.00185 * 17 7 6 19 19 O 1.21548 * 120.00255 * 359.97438 * 18 17 7 20 20 C 1.47108 * 119.99633 * 180.02562 * 18 17 7 21 21 C 1.46749 * 127.02647 * 359.97083 * 20 18 17 22 22 C 1.34433 * 106.37607 * 180.25158 * 21 20 18 23 23 C 1.50693 * 125.46056 * 179.75186 * 22 21 20 24 24 N 1.36431 * 109.08248 * 359.63423 * 22 21 20 25 25 C 1.46499 * 124.80973 * 180.19344 * 24 22 21 26 26 C 1.34627 * 110.38509 * 0.38299 * 24 22 21 27 27 C 1.50700 * 125.89920 * 179.76791 * 26 24 22 28 28 H 1.08994 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47166 * 300.00502 * 1 2 3 30 30 H 1.09004 * 109.46964 * 60.00077 * 1 2 3 31 31 H 1.08994 * 109.47707 * 239.99429 * 2 1 3 32 32 H 1.09000 * 109.46835 * 119.99168 * 2 1 3 33 33 H 1.09004 * 109.46865 * 60.00388 * 6 4 3 34 34 H 1.08999 * 109.47330 * 299.99991 * 6 4 3 35 35 H 0.96994 * 120.00124 * 179.97438 * 12 11 9 36 36 H 1.08002 * 126.80880 * 359.97438 * 21 20 18 37 37 H 1.09003 * 109.47276 * 90.02394 * 23 22 21 38 38 H 1.08995 * 109.47413 * 210.02929 * 23 22 21 39 39 H 1.09000 * 109.46770 * 330.02502 * 23 22 21 40 40 H 1.09005 * 109.47120 * 270.22192 * 25 24 22 41 41 H 1.09005 * 109.47010 * 30.21348 * 25 24 22 42 42 H 1.08996 * 109.47425 * 150.21921 * 25 24 22 43 43 H 1.08999 * 109.47390 * 269.97706 * 27 26 24 44 44 H 1.08997 * 109.46768 * 29.98413 * 27 26 24 45 45 H 1.09001 * 109.46546 * 149.97802 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 1 5.7807 2.2493 -0.8414 9 6 6.0244 4.2445 -0.1242 10 1 6.6592 4.4925 -0.9619 11 6 5.7406 5.1969 0.8316 12 7 4.9671 4.8950 1.8515 13 14 6.4538 6.9165 0.6770 14 1 5.5187 7.7725 -0.0964 15 1 6.6493 7.4947 2.0308 16 1 7.7600 6.8493 -0.0260 17 8 5.9016 2.2547 1.2412 18 6 7.0510 1.5521 1.1964 19 8 7.6578 1.4456 0.1486 20 6 7.5704 0.9133 2.4155 21 6 6.9679 0.9415 3.7533 22 6 7.7851 0.2332 4.5519 23 6 7.5748 -0.0084 6.0244 24 7 8.8339 -0.2342 3.8151 25 6 9.9285 -1.0521 4.3435 26 6 8.7228 0.1663 2.5346 27 6 9.6910 -0.1478 1.4233 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 3.5843 3.4701 0.8896 34 1 3.5852 3.4691 -0.8904 35 1 4.7678 5.5649 2.5240 36 1 6.0523 1.4371 4.0403 37 1 6.9950 -0.9209 6.1638 38 1 8.5413 -0.1133 6.5171 39 1 7.0358 0.8342 6.4575 40 1 10.7303 -0.4027 4.6951 41 1 9.5620 -1.6580 5.1722 42 1 10.3075 -1.7040 3.5565 43 1 10.4539 0.6292 1.3757 44 1 10.1643 -1.1107 1.6153 45 1 9.1548 -0.1891 0.4752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870620079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:33 Heat of formation + Delta-G solvation = -136.448017 kcal Electronic energy + Delta-G solvation = -28257.092618 eV Core-core repulsion = 24240.655443 eV Total energy + Delta-G solvation = -4016.437175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99020 -39.69155 -38.34794 -36.04781 -34.97138 -32.96271 -32.55558 -32.24881 -31.51581 -30.13731 -28.92495 -26.71719 -26.04810 -24.52420 -23.21548 -22.20109 -21.22413 -19.90166 -19.46156 -18.00092 -17.10189 -16.72511 -16.13934 -16.03016 -15.57510 -15.50923 -15.16025 -14.65597 -14.48654 -13.98784 -13.75830 -13.61629 -13.18298 -13.06254 -12.92611 -12.83993 -12.61248 -12.28349 -12.22437 -12.20284 -12.02215 -11.83540 -11.63336 -11.47706 -11.41437 -11.17886 -10.97347 -10.94541 -10.77509 -10.61853 -10.11508 -10.05568 -9.58486 -9.27983 -9.03866 -8.62911 -8.56247 -8.14175 -7.56780 -6.12563 -4.28815 2.23973 2.83558 3.01755 3.12554 3.26096 3.34100 3.38318 3.42894 4.34428 4.36535 4.47937 4.76729 4.94325 5.05452 5.14215 5.14730 5.20282 5.24560 5.25106 5.35827 5.45150 5.50509 5.56035 5.62018 5.88458 5.90155 5.95598 5.99105 6.08253 6.11004 6.16316 6.35346 6.43155 6.46146 6.63260 6.77252 7.08240 7.15606 7.26643 7.41585 7.49334 7.58466 7.80253 8.09686 8.24499 8.62268 8.79425 9.39348 9.53011 10.89979 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008118 B = 0.005143 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3448.372352 B = 5442.729722 C = 7493.527257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.456 3.544 5 O -0.514 6.514 6 C -0.101 4.101 7 C 0.232 3.768 8 H 0.044 0.956 9 C -0.545 4.545 10 H 0.068 0.932 11 C 0.082 3.918 12 N -0.859 5.859 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.272 1.272 17 O -0.323 6.323 18 C 0.540 3.460 19 O -0.544 6.544 20 C -0.198 4.198 21 C -0.131 4.131 22 C -0.015 4.015 23 C -0.076 4.076 24 N -0.444 5.444 25 C 0.070 3.930 26 C 0.089 3.911 27 C -0.088 4.088 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.266 0.734 36 H 0.149 0.851 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 -10.849 6.164 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.285 6.285 4 C 0.301 3.699 5 O -0.401 6.401 6 C -0.139 4.139 7 C 0.179 3.821 8 H 0.062 0.938 9 C -0.582 4.582 10 H 0.086 0.914 11 C -0.125 4.125 12 N -0.495 5.495 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.196 1.196 17 O -0.238 6.238 18 C 0.386 3.614 19 O -0.438 6.438 20 C -0.206 4.206 21 C -0.154 4.154 22 C -0.121 4.121 23 C -0.134 4.134 24 N -0.122 5.122 25 C -0.072 4.072 26 C -0.026 4.026 27 C -0.145 4.145 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.167 0.833 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.332 -11.293 6.181 12.942 hybrid contribution 0.405 0.792 0.045 0.891 sum 1.737 -10.501 6.225 12.330 Atomic orbital electron populations 1.21773 0.93371 1.02241 1.03295 1.22836 0.94772 0.81952 1.01999 1.86577 1.26259 1.30842 1.84837 1.24952 0.79399 0.94393 0.71205 1.90604 1.60178 1.43631 1.45695 1.21881 0.96916 0.87988 1.07088 1.19979 0.87817 0.92458 0.81887 0.93804 1.21365 1.32190 0.94400 1.10205 0.91373 1.25084 0.93928 0.98953 0.94493 1.69869 1.34558 1.34227 1.10848 0.86538 0.79881 0.83754 0.77581 1.20236 1.20968 1.19650 1.86656 1.36520 1.59679 1.40906 1.19729 0.80128 0.75245 0.86261 1.90637 1.59634 1.61103 1.32418 1.19828 0.98204 1.08889 0.93711 1.21932 1.00318 1.01909 0.91285 1.20099 0.91551 1.05974 0.94510 1.20236 1.01667 1.02676 0.88808 1.43270 1.19914 1.41573 1.07435 1.21978 0.89256 0.95276 1.00640 1.20440 0.97534 0.99648 0.84992 1.20506 0.97165 1.00347 0.96495 0.90926 0.91618 0.91734 0.91946 0.91793 0.84241 0.88023 0.92430 0.83293 0.91583 0.92323 0.90168 0.91081 0.89981 0.89892 0.90737 0.92457 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.29 37.16 0.38 -1.32 16 2 C 0.06 0.91 6.19 37.16 0.23 1.14 16 3 O -0.37 -7.08 10.22 -39.26 -0.40 -7.48 16 4 C 0.46 10.26 7.84 36.00 0.28 10.54 16 5 O -0.51 -12.77 15.17 -23.95 -0.36 -13.14 16 6 C -0.10 -2.40 5.23 -27.88 -0.15 -2.54 16 7 C 0.23 6.24 1.65 -27.88 -0.05 6.19 16 8 H 0.04 1.24 6.97 -51.93 -0.36 0.88 16 9 C -0.54 -15.21 8.92 -34.44 -0.31 -15.52 16 10 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 11 C 0.08 2.21 5.25 -17.82 -0.09 2.12 16 12 N -0.86 -23.34 10.93 55.43 0.61 -22.74 16 13 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 O -0.32 -8.92 8.43 -45.95 -0.39 -9.30 16 18 C 0.54 14.26 7.92 34.33 0.27 14.53 16 19 O -0.54 -14.92 14.14 -19.30 -0.27 -15.19 16 20 C -0.20 -4.45 6.33 -103.00 -0.65 -5.10 16 21 C -0.13 -2.60 10.89 -37.49 -0.41 -3.01 16 22 C -0.01 -0.24 6.84 -81.89 -0.56 -0.80 16 23 C -0.08 -0.85 9.79 36.00 0.35 -0.50 16 24 N -0.44 -6.69 3.08 -115.00 -0.35 -7.05 16 25 C 0.07 0.66 10.39 59.85 0.62 1.29 16 26 C 0.09 1.63 6.93 -81.51 -0.56 1.07 16 27 C -0.09 -1.37 9.54 36.01 0.34 -1.03 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 32 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.14 3.50 6.22 -51.93 -0.32 3.18 16 34 H 0.10 2.19 8.14 -51.93 -0.42 1.76 16 35 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.15 2.99 8.06 -52.49 -0.42 2.57 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.53 7.60 -51.93 -0.39 0.13 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.61 7.52 -51.93 -0.39 0.22 16 42 H 0.08 0.66 6.88 -51.93 -0.36 0.31 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 0.67 6.93 -51.93 -0.36 0.31 16 45 H 0.10 1.84 6.51 -51.93 -0.34 1.50 16 LS Contribution 381.03 15.07 5.74 5.74 Total: -1.00 -34.54 381.03 -7.47 -42.01 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.72 Total: 4.21 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -0.29 Total: 7.05 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.25 Total: -29.78 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.42 Total: -45.11 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.54 -7.47 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870620079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.438 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds