Wall clock time and date at job start Tue Mar 31 2020 13:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47351 * 2 1 4 4 C 1.34230 * 117.00462 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99547 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00034 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46791 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47186 * 54.99960 * 7 6 4 9 9 C 1.50699 * 109.46997 * 175.00306 * 7 6 4 10 10 H 1.08001 * 119.99824 * 239.99696 * 9 7 6 11 11 C 1.37883 * 120.00055 * 59.99783 * 9 7 6 12 12 N 1.31511 * 120.00196 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 119.99633 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47085 * 90.00245 * 13 11 9 15 15 H 1.48501 * 109.46579 * 209.99786 * 13 11 9 16 16 H 1.48497 * 109.47312 * 329.99980 * 13 11 9 17 17 O 1.45206 * 109.47185 * 294.99951 * 7 6 4 18 18 C 1.34782 * 116.99807 * 150.00185 * 17 7 6 19 19 O 1.21548 * 120.00255 * 359.97438 * 18 17 7 20 20 C 1.47108 * 119.99633 * 180.02562 * 18 17 7 21 21 C 1.46749 * 127.02647 * 359.97083 * 20 18 17 22 22 C 1.34433 * 106.37607 * 180.25158 * 21 20 18 23 23 C 1.50693 * 125.46056 * 179.75186 * 22 21 20 24 24 N 1.36431 * 109.08248 * 359.63423 * 22 21 20 25 25 C 1.46499 * 124.80973 * 180.19344 * 24 22 21 26 26 C 1.34627 * 110.38509 * 0.38299 * 24 22 21 27 27 C 1.50700 * 125.89920 * 179.76791 * 26 24 22 28 28 H 1.08994 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47166 * 300.00502 * 1 2 3 30 30 H 1.09004 * 109.46964 * 60.00077 * 1 2 3 31 31 H 1.08994 * 109.47707 * 239.99429 * 2 1 3 32 32 H 1.09000 * 109.46835 * 119.99168 * 2 1 3 33 33 H 1.09004 * 109.46865 * 60.00388 * 6 4 3 34 34 H 1.08999 * 109.47330 * 299.99991 * 6 4 3 35 35 H 0.96994 * 120.00124 * 179.97438 * 12 11 9 36 36 H 1.08002 * 126.80880 * 359.97438 * 21 20 18 37 37 H 1.09003 * 109.47276 * 90.02394 * 23 22 21 38 38 H 1.08995 * 109.47413 * 210.02929 * 23 22 21 39 39 H 1.09000 * 109.46770 * 330.02502 * 23 22 21 40 40 H 1.09005 * 109.47120 * 270.22192 * 25 24 22 41 41 H 1.09005 * 109.47010 * 30.21348 * 25 24 22 42 42 H 1.08996 * 109.47425 * 150.21921 * 25 24 22 43 43 H 1.08999 * 109.47390 * 269.97706 * 27 26 24 44 44 H 1.08997 * 109.46768 * 29.98413 * 27 26 24 45 45 H 1.09001 * 109.46546 * 149.97802 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 1 5.7807 2.2493 -0.8414 9 6 6.0244 4.2445 -0.1242 10 1 6.6592 4.4925 -0.9619 11 6 5.7406 5.1969 0.8316 12 7 4.9671 4.8950 1.8515 13 14 6.4538 6.9165 0.6770 14 1 5.5187 7.7725 -0.0964 15 1 6.6493 7.4947 2.0308 16 1 7.7600 6.8493 -0.0260 17 8 5.9016 2.2547 1.2412 18 6 7.0510 1.5521 1.1964 19 8 7.6578 1.4456 0.1486 20 6 7.5704 0.9133 2.4155 21 6 6.9679 0.9415 3.7533 22 6 7.7851 0.2332 4.5519 23 6 7.5748 -0.0084 6.0244 24 7 8.8339 -0.2342 3.8151 25 6 9.9285 -1.0521 4.3435 26 6 8.7228 0.1663 2.5346 27 6 9.6910 -0.1478 1.4233 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 3.5843 3.4701 0.8896 34 1 3.5852 3.4691 -0.8904 35 1 4.7678 5.5649 2.5240 36 1 6.0523 1.4371 4.0403 37 1 6.9950 -0.9209 6.1638 38 1 8.5413 -0.1133 6.5171 39 1 7.0358 0.8342 6.4575 40 1 10.7303 -0.4027 4.6951 41 1 9.5620 -1.6580 5.1722 42 1 10.3075 -1.7040 3.5565 43 1 10.4539 0.6292 1.3757 44 1 10.1643 -1.1107 1.6153 45 1 9.1548 -0.1891 0.4752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870620079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:32 Heat of formation + Delta-G solvation = -156.211650 kcal Electronic energy + Delta-G solvation = -28257.949633 eV Core-core repulsion = 24240.655443 eV Total energy + Delta-G solvation = -4017.294190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.33918 -41.47197 -40.31155 -37.80024 -36.96362 -34.98926 -33.81752 -33.53388 -32.89558 -31.95382 -30.03931 -28.30528 -27.68118 -25.88261 -24.77384 -23.67431 -22.86166 -21.58982 -21.18246 -19.47336 -19.00509 -18.52458 -17.94098 -17.57824 -17.26009 -16.96290 -16.74112 -16.44122 -16.14360 -15.84621 -15.25919 -14.85713 -14.54777 -14.32026 -14.21434 -14.05467 -13.85363 -13.71254 -13.63269 -13.51988 -13.33626 -13.12475 -13.00190 -12.97138 -12.83180 -12.77656 -12.60226 -12.52379 -12.46868 -12.34326 -12.07776 -11.54093 -11.48220 -11.37030 -11.03004 -10.71716 -10.64771 -9.55451 -8.95444 -8.20477 -6.46458 0.67158 1.28670 1.40103 1.41396 1.42114 1.53110 1.79665 1.83587 2.38107 2.54146 2.60399 3.15521 3.79738 3.89672 3.93135 3.98057 3.99740 4.12705 4.16940 4.33708 4.37619 4.41471 4.48460 4.55451 4.60377 4.63225 4.70414 4.70723 4.81423 4.87092 4.92730 4.96504 5.02781 5.08802 5.13081 5.13741 5.32383 5.36399 5.49613 5.66376 5.77565 5.98263 6.08394 6.23075 6.38885 6.61043 6.86151 7.27964 7.47413 8.82048 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008118 B = 0.005143 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3448.372352 B = 5442.729722 C = 7493.527257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 O -0.363 6.363 4 C 0.464 3.536 5 O -0.543 6.543 6 C -0.093 4.093 7 C 0.231 3.769 8 H 0.014 0.986 9 C -0.575 4.575 10 H 0.053 0.947 11 C 0.046 3.954 12 N -0.875 5.875 13 Si 0.960 3.040 14 H -0.258 1.258 15 H -0.276 1.276 16 H -0.280 1.280 17 O -0.338 6.338 18 C 0.524 3.476 19 O -0.573 6.573 20 C -0.262 4.262 21 C -0.177 4.177 22 C 0.014 3.986 23 C -0.074 4.074 24 N -0.432 5.432 25 C 0.056 3.944 26 C 0.100 3.900 27 C -0.084 4.084 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.271 0.729 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 -12.048 8.535 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 O -0.280 6.280 4 C 0.310 3.690 5 O -0.433 6.433 6 C -0.131 4.131 7 C 0.177 3.823 8 H 0.032 0.968 9 C -0.612 4.612 10 H 0.071 0.929 11 C -0.159 4.159 12 N -0.510 5.510 13 Si 0.784 3.216 14 H -0.182 1.182 15 H -0.201 1.201 16 H -0.205 1.205 17 O -0.253 6.253 18 C 0.373 3.627 19 O -0.470 6.470 20 C -0.270 4.270 21 C -0.200 4.200 22 C -0.094 4.094 23 C -0.131 4.131 24 N -0.108 5.108 25 C -0.083 4.083 26 C -0.019 4.019 27 C -0.141 4.141 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.130 0.870 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.000 -12.510 8.579 15.300 hybrid contribution 0.206 1.008 -0.618 1.200 sum 2.206 -11.501 7.961 14.161 Atomic orbital electron populations 1.21803 0.89587 1.04495 1.03799 1.23297 0.97646 0.79699 1.01970 1.86542 1.23921 1.33551 1.84019 1.24548 0.80434 0.93426 0.70634 1.90591 1.61218 1.44324 1.47176 1.21654 0.95040 0.89098 1.07278 1.19921 0.89699 0.91604 0.81050 0.96766 1.21436 1.33405 0.95495 1.10823 0.92870 1.25739 0.94000 1.02381 0.93789 1.69962 1.34596 1.35456 1.10993 0.85550 0.78921 0.79254 0.77882 1.18226 1.20121 1.20538 1.86645 1.37464 1.60248 1.40920 1.20573 0.79518 0.74952 0.87651 1.90581 1.60185 1.62402 1.33785 1.19925 1.01388 1.12395 0.93279 1.21881 1.01490 1.05175 0.91470 1.20686 0.89874 1.02620 0.96222 1.20420 1.03943 1.03733 0.85048 1.43663 1.20602 1.40491 1.06034 1.22521 0.87961 0.95531 1.02247 1.20700 0.96278 0.97855 0.87035 1.20520 0.96440 1.03131 0.94058 0.87733 0.91338 0.90990 0.91700 0.92278 0.85414 0.86274 0.91896 0.85251 0.89508 0.89007 0.89954 0.88958 0.86964 0.87955 0.89937 0.87738 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 10.29 71.98 0.74 -2.17 16 2 C 0.05 1.46 6.19 71.98 0.45 1.90 16 3 O -0.36 -14.26 10.22 -51.42 -0.53 -14.79 16 4 C 0.46 21.94 7.84 71.24 0.56 22.50 16 5 O -0.54 -28.69 15.17 26.94 0.41 -28.28 16 6 C -0.09 -4.67 5.23 29.85 0.16 -4.52 16 7 C 0.23 13.35 1.65 29.85 0.05 13.40 16 8 H 0.01 0.88 6.97 -2.39 -0.02 0.86 16 9 C -0.58 -34.00 8.92 25.60 0.23 -33.77 16 10 H 0.05 3.20 7.81 -2.91 -0.02 3.17 16 11 C 0.05 2.57 5.25 84.66 0.44 3.02 16 12 N -0.87 -48.99 10.93 21.45 0.23 -48.75 16 13 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 14 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 O -0.34 -20.14 8.43 -51.93 -0.44 -20.58 16 18 C 0.52 29.93 7.92 70.15 0.56 30.49 16 19 O -0.57 -34.15 14.14 19.68 0.28 -33.87 16 20 C -0.26 -12.43 6.33 -18.82 -0.12 -12.54 16 21 C -0.18 -7.36 10.89 23.63 0.26 -7.11 16 22 C 0.01 0.43 6.84 40.97 0.28 0.71 16 23 C -0.07 -1.38 9.79 71.23 0.70 -0.68 16 24 N -0.43 -11.92 3.08 -517.75 -1.60 -13.52 16 25 C 0.06 0.78 10.39 127.77 1.33 2.11 16 26 C 0.10 3.65 6.93 42.04 0.29 3.94 16 27 C -0.08 -2.59 9.54 71.24 0.68 -1.91 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.96 8.13 -2.39 -0.02 1.94 16 32 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 33 H 0.13 6.75 6.22 -2.39 -0.01 6.73 16 34 H 0.12 5.38 8.14 -2.39 -0.02 5.37 16 35 H 0.27 14.19 8.31 -92.71 -0.77 13.41 16 36 H 0.13 5.66 8.06 -2.91 -0.02 5.64 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.15 7.60 -2.39 -0.02 1.13 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.11 0.96 7.52 -2.38 -0.02 0.94 16 42 H 0.10 1.08 6.88 -2.39 -0.02 1.07 16 43 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.10 2.14 6.93 -2.39 -0.02 2.13 16 45 H 0.07 2.60 6.51 -2.39 -0.02 2.58 16 Total: -1.00 -83.32 381.03 7.97 -75.35 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.99 Total: 23.36 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 6.59 Total: 15.36 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -1.36 Total: -62.27 kcal Atomic # 8 Polarization: -97.24 SS G_CDS: -0.28 Total: -97.51 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -83.32 7.97 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870620079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.860 kcal (2) G-P(sol) polarization free energy of solvation -83.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds