Wall clock time and date at job start Tue Mar 31 2020 13:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81407 * 109.46932 * 2 1 4 4 C 1.81401 * 102.99767 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47036 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47080 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46563 * 55.00664 * 6 5 4 8 8 C 1.52998 * 109.46807 * 175.00413 * 6 5 4 9 9 N 1.46495 * 109.47108 * 295.00358 * 6 5 4 10 10 C 1.34780 * 119.99680 * 155.00003 * 9 6 5 11 11 O 1.21573 * 120.00011 * 359.97438 * 10 9 6 12 12 N 1.34776 * 119.99650 * 180.02562 * 10 9 6 13 13 C 1.39465 * 119.99623 * 174.98209 * 12 10 9 14 14 C 1.38646 * 119.64548 * 185.36123 * 13 12 10 15 15 C 1.40827 * 118.67389 * 179.97438 * 14 13 12 16 16 C 1.41540 * 120.99853 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99877 * 151.72429 * 16 15 14 18 18 C 1.40033 * 119.99983 * 331.72399 * 16 15 14 19 19 N 1.30745 * 120.00227 * 350.15653 * 18 16 15 20 20 Si 1.86799 * 119.99963 * 170.15151 * 18 16 15 21 21 H 1.48496 * 109.47303 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47035 * 120.00386 * 20 18 16 23 23 H 1.48499 * 109.47142 * 240.00237 * 20 18 16 24 24 C 1.41165 * 118.00132 * 359.97438 * 15 14 13 25 25 C 1.36586 * 119.13185 * 0.02562 * 24 15 14 26 26 N 1.32068 * 121.25602 * 359.74210 * 25 24 15 27 27 H 1.09003 * 109.47164 * 300.00156 * 1 2 3 28 28 H 1.09008 * 109.47019 * 59.99881 * 1 2 3 29 29 H 1.08996 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46978 * 240.00535 * 2 1 3 31 31 H 1.08998 * 109.47086 * 120.00090 * 2 1 3 32 32 H 1.08993 * 109.47512 * 300.00368 * 4 3 2 33 33 H 1.09001 * 109.47027 * 60.00340 * 4 3 2 34 34 H 1.08993 * 109.47530 * 300.00674 * 5 4 3 35 35 H 1.09001 * 109.46676 * 60.00442 * 5 4 3 36 36 H 1.08996 * 109.47656 * 60.00305 * 8 6 5 37 37 H 1.09005 * 109.47047 * 180.02562 * 8 6 5 38 38 H 1.08998 * 109.47459 * 299.99827 * 8 6 5 39 39 H 0.96997 * 120.00263 * 335.00109 * 9 6 5 40 40 H 0.96998 * 120.00520 * 354.97539 * 12 10 9 41 41 H 1.07999 * 120.66700 * 359.97438 * 14 13 12 42 42 H 0.96994 * 120.00631 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.43280 * 179.97438 * 24 15 14 44 44 H 1.08001 * 119.37220 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 0.0008 5 6 4.6064 2.8817 0.0002 6 6 6.1267 2.7093 0.0015 7 1 6.4218 2.0821 -0.8396 8 6 6.7954 4.0796 -0.1246 9 7 6.5451 2.0752 1.2541 10 6 7.6955 1.3746 1.3032 11 8 8.3855 1.2684 0.3079 12 7 8.0802 0.7907 2.4554 13 6 9.2144 -0.0204 2.4813 14 6 9.5407 -0.7062 3.6412 15 6 10.6901 -1.5198 3.6445 16 6 11.0693 -2.2412 4.8017 17 1 11.6221 -3.1640 4.7057 18 6 10.7276 -1.7585 6.0710 19 7 10.2321 -0.5556 6.2014 20 14 10.9796 -2.8331 7.5780 21 1 11.5505 -4.1400 7.1642 22 1 11.9141 -2.1598 8.5154 23 1 9.6752 -3.0536 8.2525 24 6 11.4528 -1.5943 2.4589 25 6 11.0521 -0.8817 1.3647 26 7 9.9655 -0.1317 1.3956 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.2398 0.9545 0.8909 33 1 4.2405 0.9543 -0.8890 34 1 4.3036 3.4328 -0.8901 35 1 4.3030 3.4337 0.8898 36 1 6.5002 4.7069 0.7164 37 1 7.8785 3.9568 -0.1242 38 1 6.4841 4.5514 -1.0566 39 1 5.9943 2.1595 2.0481 40 1 7.5683 0.9347 3.2667 41 1 8.9257 -0.6182 4.5247 42 1 9.9951 -0.2213 7.0805 43 1 12.3419 -2.2061 2.4179 44 1 11.6325 -0.9362 0.4555 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871724899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:21 Heat of formation + Delta-G solvation = -26.593854 kcal Electronic energy + Delta-G solvation = -24235.667644 eV Core-core repulsion = 20699.039725 eV Total energy + Delta-G solvation = -3536.627919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45948 -39.95219 -37.63527 -36.02900 -35.46051 -33.68398 -33.32774 -32.38731 -31.06284 -29.89687 -27.89649 -25.55487 -24.32304 -23.81838 -23.49284 -21.95718 -21.57680 -19.63334 -19.40960 -17.80868 -17.24413 -17.12127 -16.73298 -16.32362 -16.06829 -15.99863 -15.84681 -15.57055 -15.13684 -15.10141 -14.74559 -14.62580 -14.35036 -14.29590 -13.70580 -13.48043 -13.17026 -13.07290 -12.87590 -12.80893 -12.69187 -12.53063 -12.28403 -12.13171 -12.05749 -11.86114 -11.62599 -11.49044 -11.22683 -11.17382 -10.94387 -10.08263 -9.88380 -9.60619 -8.84605 -8.69206 -8.57924 -6.56742 0.66807 0.84113 1.00613 1.41881 1.55688 1.56385 1.60695 1.65496 2.21260 2.30637 2.85520 3.20289 3.70321 3.75849 3.89715 3.93618 3.98999 4.06430 4.16764 4.36531 4.47981 4.49834 4.57718 4.70928 4.78493 4.82302 4.85349 4.85504 4.88991 4.92061 4.99141 5.10253 5.12452 5.20004 5.24512 5.32125 5.50069 5.62018 5.66591 5.86245 5.99695 6.28695 6.57220 6.80388 6.84395 7.01698 7.64754 7.90792 8.31107 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002641 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.815485 B =10600.599857 C =11830.141207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 S -0.291 6.291 4 C -0.078 4.078 5 C -0.094 4.094 6 C 0.168 3.832 7 H 0.067 0.933 8 C -0.158 4.158 9 N -0.727 5.727 10 C 0.690 3.310 11 O -0.578 6.578 12 N -0.662 5.662 13 C 0.353 3.647 14 C -0.257 4.257 15 C 0.115 3.885 16 C -0.485 4.485 17 H 0.083 0.917 18 C 0.037 3.963 19 N -0.819 5.819 20 Si 0.989 3.011 21 H -0.259 1.259 22 H -0.267 1.267 23 H -0.262 1.262 24 C -0.294 4.294 25 C 0.112 3.888 26 N -0.575 5.575 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.085 0.915 39 H 0.407 0.593 40 H 0.419 0.581 41 H 0.125 0.875 42 H 0.291 0.709 43 H 0.116 0.884 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.551 5.240 -5.182 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.236 4.236 3 S -0.065 6.065 4 C -0.227 4.227 5 C -0.133 4.133 6 C 0.062 3.938 7 H 0.085 0.915 8 C -0.217 4.217 9 N -0.385 5.385 10 C 0.390 3.610 11 O -0.452 6.452 12 N -0.311 5.311 13 C 0.125 3.875 14 C -0.283 4.283 15 C 0.106 3.894 16 C -0.516 4.516 17 H 0.101 0.899 18 C -0.179 4.179 19 N -0.445 5.445 20 Si 0.810 3.190 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.318 4.318 25 C -0.041 4.041 26 N -0.295 5.295 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.244 0.756 40 H 0.256 0.744 41 H 0.143 0.857 42 H 0.101 0.899 43 H 0.134 0.866 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.943 6.746 -6.753 20.324 hybrid contribution 1.007 -1.889 2.108 3.004 sum -16.936 4.858 -4.645 18.221 Atomic orbital electron populations 1.21518 0.91135 1.03499 1.03006 1.23383 1.01062 0.93907 1.05237 1.86837 1.06461 1.14966 1.98187 1.23347 0.92344 1.01942 1.05028 1.21560 0.91165 0.94974 1.05610 1.20817 0.93565 0.93953 0.85500 0.91492 1.22138 0.99835 0.96137 1.03551 1.45172 1.22323 1.56088 1.14945 1.16258 0.82348 0.79071 0.83324 1.90974 1.54955 1.64420 1.34882 1.42470 1.27457 1.49445 1.11750 1.18174 0.87536 0.91078 0.90707 1.21527 1.01811 1.07733 0.97203 1.18027 0.89050 0.89510 0.92783 1.19860 1.32758 1.08273 0.90677 0.89928 1.26798 0.91745 0.95851 1.03525 1.69793 1.31474 1.16038 1.27236 0.85047 0.79133 0.78756 0.76103 1.18247 1.19215 1.18639 1.21885 1.03777 1.09704 0.96417 1.21930 0.92288 0.92340 0.97574 1.67343 1.08974 1.25417 1.27782 0.91862 0.91764 0.89601 0.89849 0.89974 0.90313 0.90567 0.87998 0.89019 0.91042 0.94946 0.89590 0.75636 0.74412 0.85708 0.89864 0.86634 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.92 71.98 0.71 -0.84 16 2 C -0.09 -1.29 6.66 71.98 0.48 -0.81 16 3 S -0.29 -5.14 21.74 -56.49 -1.23 -6.37 16 4 C -0.08 -1.37 5.83 71.98 0.42 -0.95 16 5 C -0.09 -1.44 4.76 30.60 0.15 -1.29 16 6 C 0.17 3.65 2.57 44.99 0.12 3.77 16 7 H 0.07 1.81 7.58 -2.39 -0.02 1.79 16 8 C -0.16 -3.28 9.48 71.98 0.68 -2.59 16 9 N -0.73 -18.31 4.53 -457.83 -2.08 -20.39 16 10 C 0.69 26.03 8.49 179.05 1.52 27.55 16 11 O -0.58 -27.33 14.26 -3.95 -0.06 -27.39 16 12 N -0.66 -26.00 5.40 -322.37 -1.74 -27.74 16 13 C 0.35 17.44 7.42 132.76 0.99 18.43 16 14 C -0.26 -13.27 8.60 23.00 0.20 -13.07 16 15 C 0.11 6.16 5.58 -21.11 -0.12 6.04 16 16 C -0.48 -25.15 9.13 23.52 0.21 -24.93 16 17 H 0.08 4.12 7.87 -2.91 -0.02 4.09 16 18 C 0.04 1.76 5.30 85.29 0.45 2.21 16 19 N -0.82 -40.17 10.83 21.84 0.24 -39.93 16 20 Si 0.99 36.02 29.57 68.60 2.03 38.05 16 21 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 22 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 23 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 24 C -0.29 -14.73 9.85 22.60 0.22 -14.51 16 25 C 0.11 5.49 11.10 84.27 0.94 6.43 16 26 N -0.58 -30.14 7.86 -194.27 -1.53 -31.67 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.46 7.75 -2.39 -0.02 1.44 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.41 7.66 8.62 -92.71 -0.80 6.86 16 40 H 0.42 13.30 8.71 -92.71 -0.81 12.50 16 41 H 0.13 6.39 6.27 -2.91 -0.02 6.38 16 42 H 0.29 12.70 8.29 -92.71 -0.77 11.94 16 43 H 0.12 5.28 8.06 -2.91 -0.02 5.26 16 44 H 0.15 6.23 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -69.24 380.97 2.01 -67.23 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: -0.59 Total: 42.77 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 6.97 Total: 5.43 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -5.10 Total: -119.72 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.06 Total: -27.39 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -1.23 Total: -6.37 kcal Total: -69.24 2.01 -67.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871724899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.635 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds