Wall clock time and date at job start Tue Mar 31 2020 13:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81401 * 109.47112 * 2 1 4 4 C 1.81403 * 103.00179 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47528 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47475 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47165 * 304.99737 * 6 5 4 8 8 C 1.53001 * 109.47635 * 184.99845 * 6 5 4 9 9 N 1.46504 * 109.47240 * 64.99530 * 6 5 4 10 10 C 1.34769 * 120.00359 * 205.00137 * 9 6 5 11 11 O 1.21584 * 119.99840 * 359.97438 * 10 9 6 12 12 N 1.34776 * 120.00317 * 180.02562 * 10 9 6 13 13 C 1.39466 * 120.00039 * 175.45378 * 12 10 9 14 14 C 1.38642 * 119.64545 * 186.28663 * 13 12 10 15 15 C 1.40814 * 118.67366 * 179.97438 * 14 13 12 16 16 C 1.41546 * 120.99904 * 179.97438 * 15 14 13 17 17 H 1.08009 * 119.99907 * 201.14939 * 16 15 14 18 18 C 1.40026 * 120.00097 * 21.14556 * 16 15 14 19 19 N 1.30739 * 119.99859 * 12.11028 * 18 16 15 20 20 Si 1.86797 * 120.00200 * 192.11357 * 18 16 15 21 21 H 1.48504 * 109.47060 * 59.99854 * 20 18 16 22 22 H 1.48502 * 109.47386 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47142 * 300.00207 * 20 18 16 24 24 C 1.41169 * 118.00424 * 0.02562 * 15 14 13 25 25 C 1.36586 * 119.12810 * 0.02562 * 24 15 14 26 26 N 1.32067 * 121.25764 * 359.74345 * 25 24 15 27 27 H 1.08999 * 109.47021 * 60.00178 * 1 2 3 28 28 H 1.09000 * 109.47160 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47155 * 299.99975 * 1 2 3 30 30 H 1.09002 * 109.47155 * 240.00025 * 2 1 3 31 31 H 1.08999 * 109.47021 * 119.99822 * 2 1 3 32 32 H 1.08999 * 109.47360 * 59.99553 * 4 3 2 33 33 H 1.09010 * 109.46682 * 300.00318 * 4 3 2 34 34 H 1.08999 * 109.47311 * 59.99344 * 5 4 3 35 35 H 1.08998 * 109.46850 * 300.00374 * 5 4 3 36 36 H 1.09004 * 109.46756 * 300.00143 * 8 6 5 37 37 H 1.09003 * 109.46684 * 59.99152 * 8 6 5 38 38 H 1.08987 * 109.47446 * 180.02562 * 8 6 5 39 39 H 0.97004 * 119.99839 * 25.00663 * 9 6 5 40 40 H 0.96998 * 119.99931 * 355.45473 * 12 10 9 41 41 H 1.08003 * 120.66443 * 0.02562 * 14 13 12 42 42 H 0.96998 * 120.00292 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.43607 * 179.97438 * 24 15 14 44 44 H 1.08003 * 119.36889 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5059 0.0008 5 6 4.6065 2.8816 0.0015 6 6 6.1267 2.7093 0.0015 7 1 6.4212 2.0822 0.8431 8 6 6.7955 4.0795 0.1279 9 7 6.5462 2.0747 -1.2505 10 6 7.6965 1.3741 -1.2986 11 8 8.3863 1.2690 -0.3029 12 7 8.0827 0.7908 -2.4505 13 6 9.3174 0.1466 -2.5263 14 6 9.7652 -0.3363 -3.7463 15 6 11.0150 -0.9829 -3.7994 16 6 11.5196 -1.4951 -5.0186 17 1 12.2782 -2.2639 -5.0086 18 6 11.0351 -1.0054 -6.2377 19 7 10.3012 0.0763 -6.2623 20 14 11.4373 -1.8976 -7.8288 21 1 10.9113 -3.2849 -7.7650 22 1 10.8100 -1.1828 -8.9694 23 1 12.9099 -1.9348 -8.0169 24 6 11.7493 -1.1057 -2.5999 25 6 11.2254 -0.5989 -1.4448 26 7 10.0514 0.0058 -1.4323 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.2407 0.9542 -0.8889 33 1 4.2398 0.9544 0.8911 34 1 4.3029 3.4330 0.8914 35 1 4.3038 3.4334 -0.8884 36 1 6.5009 4.7066 -0.7136 37 1 6.4832 4.5516 1.0595 38 1 7.8784 3.9567 0.1275 39 1 5.9961 2.1589 -2.0450 40 1 7.5020 0.8190 -3.2269 41 1 9.1678 -0.2184 -4.6382 42 1 9.9653 0.4154 -7.1067 43 1 12.7122 -1.5948 -2.5955 44 1 11.7836 -0.6911 -0.5249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871724901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:24 Heat of formation + Delta-G solvation = -8.307605 kcal Electronic energy + Delta-G solvation = -24227.420288 eV Core-core repulsion = 20691.585320 eV Total energy + Delta-G solvation = -3535.834967 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.89491 -38.23504 -36.40635 -34.26392 -33.72083 -33.11447 -32.17255 -30.49005 -29.95036 -28.21155 -26.00977 -24.77689 -23.39688 -22.26913 -21.83485 -20.70329 -20.09158 -18.10556 -17.66748 -16.50253 -16.26140 -15.69969 -15.30402 -15.12263 -14.96455 -14.70654 -14.33061 -14.17911 -14.12590 -13.86052 -13.38271 -13.02524 -12.90817 -12.77674 -12.60254 -12.36451 -12.09496 -12.07777 -11.89496 -11.54608 -11.45453 -11.25990 -11.18475 -10.89398 -10.77830 -10.30243 -10.22093 -10.10496 -9.76689 -9.54884 -9.38440 -8.81887 -7.97837 -7.94637 -7.71503 -6.98744 -6.75310 -4.63301 1.37257 2.31821 2.71517 2.82206 2.99246 3.02123 3.04750 3.26428 3.82986 3.88578 4.48247 4.57198 4.57528 4.62207 4.69780 4.70416 4.81134 5.03851 5.27612 5.31856 5.37703 5.42542 5.42919 5.55667 5.70728 5.71510 5.73249 5.76392 5.90525 6.07765 6.27703 6.56434 6.63871 6.77422 6.82552 6.94066 7.17504 7.31103 7.45979 7.51027 7.88581 8.12325 8.41296 8.48038 8.74202 8.76107 9.21176 9.75944 10.05927 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.002567 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.776284 B =10905.130642 C =11987.809811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 S -0.273 6.273 4 C -0.081 4.081 5 C -0.109 4.109 6 C 0.169 3.831 7 H 0.089 0.911 8 C -0.163 4.163 9 N -0.751 5.751 10 C 0.691 3.309 11 O -0.533 6.533 12 N -0.668 5.668 13 C 0.354 3.646 14 C -0.251 4.251 15 C 0.139 3.861 16 C -0.449 4.449 17 H 0.081 0.919 18 C 0.075 3.925 19 N -0.791 5.791 20 Si 0.915 3.085 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.285 4.285 25 C 0.119 3.881 26 N -0.553 5.553 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.390 0.610 40 H 0.403 0.597 41 H 0.139 0.861 42 H 0.281 0.719 43 H 0.100 0.900 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.403 3.761 6.018 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.237 4.237 3 S -0.047 6.047 4 C -0.230 4.230 5 C -0.148 4.148 6 C 0.061 3.939 7 H 0.107 0.893 8 C -0.222 4.222 9 N -0.409 5.409 10 C 0.391 3.609 11 O -0.404 6.404 12 N -0.316 5.316 13 C 0.128 3.872 14 C -0.277 4.277 15 C 0.131 3.869 16 C -0.480 4.480 17 H 0.099 0.901 18 C -0.144 4.144 19 N -0.417 5.417 20 Si 0.739 3.261 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.309 4.309 25 C -0.035 4.035 26 N -0.273 5.273 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.223 0.777 40 H 0.237 0.763 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.835 5.114 7.640 19.182 hybrid contribution 0.703 -1.714 -2.445 3.068 sum -16.132 3.400 5.195 17.285 Atomic orbital electron populations 1.21513 0.92255 1.02539 1.03136 1.23294 1.00143 0.95248 1.05054 1.86825 1.06498 1.13197 1.98171 1.23404 0.92214 1.01730 1.05612 1.21660 0.93862 0.95045 1.04225 1.20682 0.91525 0.94351 0.87316 0.89265 1.22189 1.02274 0.96182 1.01543 1.45352 1.24554 1.57619 1.13421 1.16102 0.81417 0.79089 0.84303 1.91008 1.53135 1.63169 1.33064 1.42565 1.19258 1.56706 1.13048 1.17995 0.84977 0.93481 0.90788 1.21783 0.99386 1.10916 0.95609 1.17581 0.89359 0.87753 0.92222 1.19581 1.19646 1.19178 0.89642 0.90106 1.25979 0.93173 0.93746 1.01483 1.69728 1.26309 1.16918 1.28721 0.86255 0.79847 0.80345 0.79634 1.18772 1.20249 1.18873 1.21641 1.01842 1.12585 0.94873 1.21460 0.91360 0.94281 0.96410 1.67200 1.08152 1.23305 1.28607 0.91681 0.91120 0.91732 0.90039 0.90112 0.89740 0.89885 0.89471 0.90421 0.92606 0.91895 0.91454 0.77678 0.76277 0.84353 0.90767 0.88135 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.92 37.16 0.37 -0.52 16 2 C -0.09 -0.70 6.66 37.16 0.25 -0.45 16 3 S -0.27 -2.60 21.74 -107.50 -2.34 -4.94 16 4 C -0.08 -0.76 5.83 37.16 0.22 -0.54 16 5 C -0.11 -0.95 4.76 -26.74 -0.13 -1.08 16 6 C 0.17 1.94 2.57 -67.93 -0.17 1.77 16 7 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 8 C -0.16 -1.84 9.48 37.16 0.35 -1.49 16 9 N -0.75 -9.91 4.53 -58.68 -0.27 -10.17 16 10 C 0.69 13.10 8.49 -86.93 -0.74 12.36 16 11 O -0.53 -12.43 14.27 5.29 0.08 -12.36 16 12 N -0.67 -13.14 5.40 -15.86 -0.09 -13.23 16 13 C 0.35 8.65 7.42 -154.68 -1.15 7.50 16 14 C -0.25 -6.39 8.67 -38.46 -0.33 -6.72 16 15 C 0.14 3.68 5.65 -106.55 -0.60 3.07 16 16 C -0.45 -11.51 9.15 -37.65 -0.34 -11.86 16 17 H 0.08 1.98 7.88 -52.48 -0.41 1.56 16 18 C 0.07 1.78 5.31 -17.35 -0.09 1.69 16 19 N -0.79 -19.27 10.50 55.55 0.58 -18.68 16 20 Si 0.91 17.82 29.58 -169.99 -5.03 12.79 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.29 -7.06 9.85 -39.07 -0.38 -7.45 16 25 C 0.12 2.89 11.10 -18.05 -0.20 2.69 16 26 N -0.55 -14.33 7.86 -12.76 -0.10 -14.43 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.08 0.82 7.75 -51.92 -0.40 0.42 16 33 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.97 8.14 -51.94 -0.42 0.55 16 39 H 0.39 4.08 8.62 -40.82 -0.35 3.73 16 40 H 0.40 6.49 8.72 -40.82 -0.36 6.13 16 41 H 0.14 3.49 5.81 -52.48 -0.30 3.18 16 42 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 43 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 44 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -31.52 380.38 -11.24 -42.76 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.85 Total: 13.56 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.96 Total: -1.02 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.13 Total: -56.52 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.34 Total: -4.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.52 -11.24 -42.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871724901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.448 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds