Wall clock time and date at job start Tue Mar 31 2020 14:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 103.00286 * 2 1 4 4 C 1.52992 * 109.47305 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46998 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47116 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47362 * 180.02562 * 6 5 4 8 8 N 1.46493 * 109.47496 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00657 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99443 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00506 * 180.27476 * 9 8 7 12 12 C 1.39460 * 120.00060 * 175.17765 * 11 9 8 13 13 C 1.38639 * 119.64954 * 186.28818 * 12 11 9 14 14 C 1.40821 * 118.67929 * 179.97438 * 13 12 11 15 15 C 1.41541 * 121.00269 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99731 * 201.15287 * 15 14 13 17 17 C 1.40030 * 119.99880 * 21.14210 * 15 14 13 18 18 N 1.30743 * 119.99956 * 12.11135 * 17 15 14 19 19 Si 1.86801 * 120.00104 * 192.10739 * 17 15 14 20 20 H 1.48490 * 109.47249 * 90.00250 * 19 17 15 21 21 H 1.48505 * 109.46978 * 210.00456 * 19 17 15 22 22 H 1.48498 * 109.46840 * 329.99990 * 19 17 15 23 23 C 1.41167 * 118.00046 * 359.97438 * 14 13 12 24 24 C 1.36591 * 119.12813 * 0.02562 * 23 14 13 25 25 N 1.32062 * 121.26005 * 359.73808 * 24 23 14 26 26 H 1.08995 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46832 * 300.00155 * 1 2 3 28 28 H 1.09007 * 109.46736 * 59.99942 * 1 2 3 29 29 H 1.09008 * 109.46888 * 59.99711 * 3 2 1 30 30 H 1.08998 * 109.46896 * 300.00405 * 3 2 1 31 31 H 1.08999 * 109.47211 * 59.99924 * 4 3 2 32 32 H 1.09004 * 109.47464 * 299.99879 * 4 3 2 33 33 H 1.08999 * 109.47688 * 60.00241 * 5 4 3 34 34 H 1.09002 * 109.47225 * 299.99842 * 5 4 3 35 35 H 1.08999 * 109.47420 * 59.99589 * 6 5 4 36 36 H 1.09002 * 109.46677 * 299.99850 * 6 5 4 37 37 H 1.08999 * 109.47239 * 59.99416 * 7 6 5 38 38 H 1.09002 * 109.47051 * 299.99558 * 7 6 5 39 39 H 0.97000 * 119.99966 * 359.97438 * 8 7 6 40 40 H 0.97000 * 120.00020 * 355.18674 * 11 9 8 41 41 H 1.07998 * 120.66226 * 0.02562 * 13 12 11 42 42 H 0.96996 * 120.00359 * 179.97438 * 18 17 15 43 43 H 1.08000 * 120.43442 * 179.97438 * 23 14 13 44 44 H 1.07999 * 119.36721 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0865 3.4307 0.0013 6 6 5.6068 3.6031 0.0013 7 6 5.9510 5.0938 0.0026 8 7 7.4066 5.2590 0.0032 9 6 7.9448 6.4947 0.0038 10 8 7.2220 7.4724 0.0044 11 7 9.2839 6.6466 -0.0012 12 6 9.8408 7.9212 -0.1021 13 6 11.2133 8.0612 -0.2384 14 6 11.7537 9.3577 -0.3391 15 6 13.1479 9.5576 -0.4791 16 1 13.5859 10.5095 -0.2177 17 6 13.9593 8.5209 -0.9565 18 7 13.4160 7.4597 -1.4931 19 14 15.8181 8.6543 -0.8266 20 1 16.2667 8.0762 0.4655 21 1 16.4472 7.9100 -1.9471 22 1 16.2177 10.0829 -0.8951 23 6 10.8631 10.4521 -0.2961 24 6 9.5248 10.2153 -0.1594 25 7 9.0519 8.9853 -0.0723 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8032 2.2371 0.8900 30 1 1.8032 2.2371 -0.8899 31 1 4.1617 1.4702 -0.8891 32 1 4.1610 1.4704 0.8909 33 1 3.6673 3.9001 0.8913 34 1 3.6680 3.9006 -0.8887 35 1 6.0257 3.1339 -0.8889 36 1 6.0257 3.1331 0.8911 37 1 5.5321 5.5627 0.8930 38 1 5.5321 5.5642 -0.8870 39 1 7.9832 4.4790 0.0032 40 1 9.8605 5.8693 0.0652 41 1 11.8553 7.1932 -0.2676 42 1 13.9780 6.7418 -1.8241 43 1 11.2350 11.4633 -0.3695 44 1 8.8399 11.0497 -0.1265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871726874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:08 Heat of formation + Delta-G solvation = -12.814906 kcal Electronic energy + Delta-G solvation = -23262.935253 eV Core-core repulsion = 19726.904835 eV Total energy + Delta-G solvation = -3536.030419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -39.74577 -38.08493 -36.67984 -34.54254 -34.06266 -33.69533 -31.12946 -30.43090 -29.41928 -28.48019 -26.15974 -25.93371 -22.64732 -21.88374 -21.52056 -21.36775 -19.97241 -17.95976 -17.63053 -16.58032 -16.40915 -16.11770 -15.36319 -15.31200 -14.84958 -14.43885 -14.31438 -14.27852 -14.13637 -13.91965 -13.80899 -13.36678 -13.13548 -12.85952 -12.79070 -12.57949 -12.24266 -12.22080 -11.53767 -11.49373 -11.38740 -11.18250 -11.15579 -10.89943 -10.87363 -10.41943 -10.26349 -10.07597 -9.74600 -9.54353 -9.37849 -8.75790 -8.13575 -7.96157 -7.69697 -6.96660 -6.73688 -4.61769 1.22401 2.14767 2.72441 2.82954 3.01424 3.04930 3.08292 3.27741 3.84557 3.91656 4.30051 4.41703 4.61246 4.64370 4.65635 4.69516 4.71808 4.78135 5.02053 5.13932 5.22147 5.22854 5.33874 5.47302 5.56736 5.67492 5.74869 5.82092 5.95894 6.01558 6.07578 6.58172 6.65906 6.76219 6.84144 6.95868 7.19363 7.33224 7.47883 7.53016 7.90568 8.14142 8.43601 8.50007 8.75983 8.77845 9.23178 9.78015 10.07534 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.001653 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.428339 B =16936.279745 C =17889.840359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.272 6.272 3 C -0.083 4.083 4 C -0.103 4.103 5 C -0.111 4.111 6 C -0.130 4.130 7 C 0.142 3.858 8 N -0.756 5.756 9 C 0.690 3.310 10 O -0.534 6.534 11 N -0.668 5.668 12 C 0.353 3.647 13 C -0.250 4.250 14 C 0.139 3.861 15 C -0.449 4.449 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.791 5.791 19 Si 0.915 3.085 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.286 4.286 24 C 0.119 3.881 25 N -0.554 5.554 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.391 0.609 40 H 0.404 0.596 41 H 0.139 0.861 42 H 0.281 0.719 43 H 0.101 0.899 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.165 -15.280 2.190 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.046 6.046 3 C -0.231 4.231 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.168 4.168 7 C 0.017 3.983 8 N -0.414 5.414 9 C 0.390 3.610 10 O -0.406 6.406 11 N -0.316 5.316 12 C 0.127 3.873 13 C -0.276 4.276 14 C 0.131 3.869 15 C -0.481 4.481 16 H 0.100 0.900 17 C -0.144 4.144 18 N -0.417 5.417 19 Si 0.739 3.261 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.310 4.310 24 C -0.035 4.035 25 N -0.273 5.273 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.224 0.776 40 H 0.238 0.762 41 H 0.157 0.843 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.122 -15.609 2.144 23.268 hybrid contribution 1.434 0.317 -0.135 1.475 sum -15.688 -15.293 2.009 22.000 Atomic orbital electron populations 1.23368 0.94114 1.06518 1.04934 1.86982 1.07486 1.12089 1.98092 1.23452 1.00868 0.93722 1.05088 1.21338 0.92123 0.97120 1.03610 1.21478 0.95469 0.95168 1.02977 1.21781 0.96182 0.95893 1.02949 1.21078 0.79746 0.95270 1.02207 1.45202 1.07383 1.06695 1.82164 1.16104 0.82614 0.83476 0.78849 1.91008 1.59108 1.36992 1.53454 1.42553 1.05207 1.07920 1.75903 1.18007 0.88931 0.83661 0.96691 1.21783 0.91393 1.00117 1.14310 1.17585 0.93180 0.90206 0.85932 1.19620 0.91570 0.99119 1.37753 0.90049 1.25979 1.01758 0.94342 0.92283 1.69738 1.37856 1.06706 1.27422 0.86198 0.81408 0.79728 0.78736 1.19227 1.20209 1.18504 1.21645 0.94302 0.98667 1.16345 1.21462 0.93030 0.92677 0.96328 1.67204 1.38355 0.97601 1.24149 0.88118 0.90485 0.90482 0.89968 0.89952 0.90813 0.90836 0.91289 0.91276 0.91129 0.91177 0.91908 0.91883 0.77606 0.76210 0.84323 0.90829 0.88114 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.76 101.05 1.09 0.49 16 2 S -0.27 -2.10 22.38 -107.50 -2.41 -4.50 16 3 C -0.08 -0.52 5.94 37.15 0.22 -0.30 16 4 C -0.10 -0.66 5.22 -26.73 -0.14 -0.80 16 5 C -0.11 -0.74 5.21 -26.73 -0.14 -0.88 16 6 C -0.13 -1.01 5.33 -26.73 -0.14 -1.15 16 7 C 0.14 1.66 5.67 -4.05 -0.02 1.64 16 8 N -0.76 -10.45 5.56 -65.23 -0.36 -10.82 16 9 C 0.69 13.67 8.52 -86.92 -0.74 12.92 16 10 O -0.53 -13.02 14.60 5.29 0.08 -12.94 16 11 N -0.67 -13.51 5.39 -15.86 -0.09 -13.59 16 12 C 0.35 8.79 7.42 -154.68 -1.15 7.64 16 13 C -0.25 -6.42 8.67 -38.46 -0.33 -6.76 16 14 C 0.14 3.70 5.65 -106.55 -0.60 3.10 16 15 C -0.45 -11.58 9.15 -37.65 -0.34 -11.93 16 16 H 0.08 2.01 7.88 -52.49 -0.41 1.59 16 17 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 18 N -0.79 -19.37 10.50 55.55 0.58 -18.79 16 19 Si 0.92 17.89 29.58 -169.99 -5.03 12.87 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 C -0.29 -7.12 9.85 -39.07 -0.38 -7.51 16 24 C 0.12 2.93 11.10 -18.05 -0.20 2.73 16 25 N -0.55 -14.60 7.86 -12.76 -0.10 -14.70 16 26 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.39 4.14 8.49 -40.82 -0.35 3.79 16 40 H 0.40 6.63 8.72 -40.82 -0.36 6.27 16 41 H 0.14 3.52 5.81 -52.49 -0.30 3.22 16 42 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 43 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 44 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -32.84 382.15 -11.44 -44.28 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.90 Total: 11.53 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.98 Total: 0.90 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.03 Total: -57.89 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.41 Total: -4.50 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.84 -11.44 -44.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871726874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.467 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds