Wall clock time and date at job start Tue Mar 31 2020 14:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 103.00286 * 2 1 4 4 C 1.52992 * 109.47305 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46998 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47116 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47362 * 180.02562 * 6 5 4 8 8 N 1.46493 * 109.47496 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00657 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99443 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00506 * 180.27476 * 9 8 7 12 12 C 1.39460 * 120.00060 * 175.17765 * 11 9 8 13 13 C 1.38639 * 119.64954 * 186.28818 * 12 11 9 14 14 C 1.40821 * 118.67929 * 179.97438 * 13 12 11 15 15 C 1.41541 * 121.00269 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99731 * 201.15287 * 15 14 13 17 17 C 1.40030 * 119.99880 * 21.14210 * 15 14 13 18 18 N 1.30743 * 119.99956 * 12.11135 * 17 15 14 19 19 Si 1.86801 * 120.00104 * 192.10739 * 17 15 14 20 20 H 1.48490 * 109.47249 * 90.00250 * 19 17 15 21 21 H 1.48505 * 109.46978 * 210.00456 * 19 17 15 22 22 H 1.48498 * 109.46840 * 329.99990 * 19 17 15 23 23 C 1.41167 * 118.00046 * 359.97438 * 14 13 12 24 24 C 1.36591 * 119.12813 * 0.02562 * 23 14 13 25 25 N 1.32062 * 121.26005 * 359.73808 * 24 23 14 26 26 H 1.08995 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46832 * 300.00155 * 1 2 3 28 28 H 1.09007 * 109.46736 * 59.99942 * 1 2 3 29 29 H 1.09008 * 109.46888 * 59.99711 * 3 2 1 30 30 H 1.08998 * 109.46896 * 300.00405 * 3 2 1 31 31 H 1.08999 * 109.47211 * 59.99924 * 4 3 2 32 32 H 1.09004 * 109.47464 * 299.99879 * 4 3 2 33 33 H 1.08999 * 109.47688 * 60.00241 * 5 4 3 34 34 H 1.09002 * 109.47225 * 299.99842 * 5 4 3 35 35 H 1.08999 * 109.47420 * 59.99589 * 6 5 4 36 36 H 1.09002 * 109.46677 * 299.99850 * 6 5 4 37 37 H 1.08999 * 109.47239 * 59.99416 * 7 6 5 38 38 H 1.09002 * 109.47051 * 299.99558 * 7 6 5 39 39 H 0.97000 * 119.99966 * 359.97438 * 8 7 6 40 40 H 0.97000 * 120.00020 * 355.18674 * 11 9 8 41 41 H 1.07998 * 120.66226 * 0.02562 * 13 12 11 42 42 H 0.96996 * 120.00359 * 179.97438 * 18 17 15 43 43 H 1.08000 * 120.43442 * 179.97438 * 23 14 13 44 44 H 1.07999 * 119.36721 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0865 3.4307 0.0013 6 6 5.6068 3.6031 0.0013 7 6 5.9510 5.0938 0.0026 8 7 7.4066 5.2590 0.0032 9 6 7.9448 6.4947 0.0038 10 8 7.2220 7.4724 0.0044 11 7 9.2839 6.6466 -0.0012 12 6 9.8408 7.9212 -0.1021 13 6 11.2133 8.0612 -0.2384 14 6 11.7537 9.3577 -0.3391 15 6 13.1479 9.5576 -0.4791 16 1 13.5859 10.5095 -0.2177 17 6 13.9593 8.5209 -0.9565 18 7 13.4160 7.4597 -1.4931 19 14 15.8181 8.6543 -0.8266 20 1 16.2667 8.0762 0.4655 21 1 16.4472 7.9100 -1.9471 22 1 16.2177 10.0829 -0.8951 23 6 10.8631 10.4521 -0.2961 24 6 9.5248 10.2153 -0.1594 25 7 9.0519 8.9853 -0.0723 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8032 2.2371 0.8900 30 1 1.8032 2.2371 -0.8899 31 1 4.1617 1.4702 -0.8891 32 1 4.1610 1.4704 0.8909 33 1 3.6673 3.9001 0.8913 34 1 3.6680 3.9006 -0.8887 35 1 6.0257 3.1339 -0.8889 36 1 6.0257 3.1331 0.8911 37 1 5.5321 5.5627 0.8930 38 1 5.5321 5.5642 -0.8870 39 1 7.9832 4.4790 0.0032 40 1 9.8605 5.8693 0.0652 41 1 11.8553 7.1932 -0.2676 42 1 13.9780 6.7418 -1.8241 43 1 11.2350 11.4633 -0.3695 44 1 8.8399 11.0497 -0.1265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871726874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:07 Heat of formation + Delta-G solvation = -32.023174 kcal Electronic energy + Delta-G solvation = -23263.768186 eV Core-core repulsion = 19726.904835 eV Total energy + Delta-G solvation = -3536.863352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.37726 -39.82509 -37.52932 -36.14503 -35.47819 -35.32993 -32.44197 -31.95812 -30.21550 -29.77135 -27.92787 -26.97328 -23.90177 -23.65690 -22.72031 -22.19552 -21.53805 -19.56599 -19.34852 -17.79146 -17.16860 -17.11593 -17.05384 -16.43497 -16.15530 -16.02029 -15.91207 -15.40507 -15.12888 -14.86331 -14.63717 -14.46127 -14.43557 -14.30928 -14.12529 -13.61377 -13.39386 -13.11810 -12.93940 -12.86114 -12.68106 -12.15285 -12.13592 -12.02961 -11.87684 -11.80702 -11.52933 -11.45178 -11.26079 -11.17734 -10.93224 -10.06674 -9.90693 -9.60909 -8.80940 -8.71316 -8.57213 -6.56927 0.74421 0.85898 1.02840 1.42581 1.55541 1.59701 1.66392 1.69358 2.21108 2.29407 2.85573 3.21940 3.77137 3.80016 3.91259 3.96227 4.15819 4.18240 4.31602 4.33084 4.45913 4.50404 4.56558 4.69674 4.76589 4.81874 4.87652 4.88055 4.92419 4.95702 4.98836 5.12135 5.14702 5.28777 5.36372 5.41398 5.52751 5.56228 5.67879 5.87591 6.02266 6.28919 6.59134 6.81602 6.85154 7.02792 7.64453 7.93008 8.27822 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.001653 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.428339 B =16936.279745 C =17889.840359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.328 6.328 3 C -0.073 4.073 4 C -0.097 4.097 5 C -0.106 4.106 6 C -0.117 4.117 7 C 0.139 3.861 8 N -0.732 5.732 9 C 0.686 3.314 10 O -0.583 6.583 11 N -0.661 5.661 12 C 0.349 3.651 13 C -0.267 4.267 14 C 0.110 3.890 15 C -0.478 4.478 16 H 0.084 0.916 17 C 0.037 3.963 18 N -0.812 5.812 19 Si 0.991 3.009 20 H -0.260 1.260 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.299 4.299 24 C 0.112 3.888 25 N -0.581 5.581 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.410 0.590 40 H 0.420 0.580 41 H 0.138 0.862 42 H 0.292 0.708 43 H 0.115 0.885 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.799 -16.546 2.198 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.102 6.102 3 C -0.221 4.221 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.155 4.155 7 C 0.016 3.984 8 N -0.390 5.390 9 C 0.386 3.614 10 O -0.458 6.458 11 N -0.310 5.310 12 C 0.122 3.878 13 C -0.293 4.293 14 C 0.101 3.899 15 C -0.508 4.508 16 H 0.102 0.898 17 C -0.180 4.180 18 N -0.438 5.438 19 Si 0.811 3.189 20 H -0.185 1.185 21 H -0.191 1.191 22 H -0.183 1.183 23 C -0.323 4.323 24 C -0.041 4.041 25 N -0.301 5.301 26 H 0.126 0.874 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.247 0.753 40 H 0.257 0.743 41 H 0.155 0.845 42 H 0.103 0.897 43 H 0.133 0.867 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.774 -16.956 2.153 23.948 hybrid contribution 1.251 0.658 -0.162 1.423 sum -15.523 -16.298 1.991 22.595 Atomic orbital electron populations 1.23402 0.91292 1.07322 1.05763 1.87147 1.10784 1.14094 1.98222 1.23422 1.00728 0.92261 1.05688 1.21261 0.92294 0.96629 1.03379 1.21425 0.94523 0.95399 1.03248 1.21700 0.97102 0.92735 1.03959 1.21258 0.77971 0.97999 1.01219 1.45038 1.08634 1.05298 1.80068 1.16324 0.82031 0.84593 0.78461 1.90970 1.60010 1.39151 1.55676 1.42439 1.05924 1.07089 1.75570 1.18233 0.88951 0.84928 0.95705 1.21774 0.91804 0.99931 1.15769 1.18032 0.94192 0.91124 0.86511 1.19915 0.91852 1.00185 1.38871 0.89817 1.26854 1.06519 0.93485 0.91158 1.69764 1.40021 1.07220 1.26766 0.85061 0.74914 0.79795 0.79107 1.18477 1.19113 1.18300 1.21830 0.94437 0.99141 1.16881 1.21901 0.93546 0.93158 0.95487 1.67326 1.39026 0.98403 1.25385 0.87368 0.89618 0.89657 0.89294 0.89368 0.91120 0.91016 0.90990 0.91147 0.90233 0.90029 0.92802 0.93093 0.75341 0.74285 0.84497 0.89689 0.86668 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.76 113.37 1.22 0.29 16 2 S -0.33 -4.78 22.38 -56.49 -1.26 -6.04 16 3 C -0.07 -0.81 5.94 71.98 0.43 -0.38 16 4 C -0.10 -1.09 5.22 30.59 0.16 -0.93 16 5 C -0.11 -1.21 5.21 30.60 0.16 -1.05 16 6 C -0.12 -1.57 5.33 30.59 0.16 -1.41 16 7 C 0.14 3.12 5.67 86.38 0.49 3.61 16 8 N -0.73 -19.38 5.56 -478.56 -2.66 -22.04 16 9 C 0.69 27.09 8.52 179.05 1.53 28.62 16 10 O -0.58 -28.80 14.60 -3.98 -0.06 -28.86 16 11 N -0.66 -26.74 5.39 -322.36 -1.74 -28.48 16 12 C 0.35 17.65 7.42 132.76 0.98 18.63 16 13 C -0.27 -13.95 8.67 23.00 0.20 -13.75 16 14 C 0.11 5.94 5.65 -21.11 -0.12 5.82 16 15 C -0.48 -24.78 9.15 23.52 0.22 -24.56 16 16 H 0.08 4.15 7.88 -2.91 -0.02 4.13 16 17 C 0.04 1.73 5.31 85.29 0.45 2.18 16 18 N -0.81 -39.39 10.50 21.84 0.23 -39.16 16 19 Si 0.99 35.65 29.58 68.60 2.03 37.68 16 20 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 21 H -0.27 -9.09 7.11 99.48 0.71 -8.39 16 22 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 23 C -0.30 -15.14 9.85 22.60 0.22 -14.92 16 24 C 0.11 5.60 11.10 84.27 0.94 6.54 16 25 N -0.58 -31.14 7.86 -194.27 -1.53 -32.67 16 26 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.41 7.84 8.49 -92.71 -0.79 7.05 16 40 H 0.42 13.57 8.72 -92.71 -0.81 12.77 16 41 H 0.14 7.06 5.81 -2.91 -0.02 7.04 16 42 H 0.29 12.59 8.29 -92.71 -0.77 11.82 16 43 H 0.12 5.30 8.06 -2.91 -0.02 5.28 16 44 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 Total: -1.00 -71.92 382.15 1.46 -70.46 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.58 Total: 40.42 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 7.04 Total: 8.68 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -5.70 Total: -122.34 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.06 Total: -28.86 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.68 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -1.26 Total: -6.04 kcal Total: -71.92 1.46 -70.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871726874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.433 kcal (2) G-P(sol) polarization free energy of solvation -71.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds