Wall clock time and date at job start Tue Mar 31 2020 13:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47335 * 2 1 4 4 C 1.35970 * 117.00323 * 180.02562 * 3 2 1 5 5 C 1.38725 * 119.98018 * 359.72865 * 4 3 2 6 6 C 1.38094 * 120.01129 * 179.72629 * 5 4 3 7 7 C 1.38847 * 119.98326 * 0.56972 * 6 5 4 8 8 N 1.40109 * 120.01830 * 179.68298 * 7 6 5 9 9 C 1.46502 * 119.99809 * 353.10931 * 8 7 6 10 10 C 1.50706 * 109.46964 * 88.19261 * 9 8 7 11 11 H 1.07997 * 120.00038 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99946 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00001 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99631 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47396 * 60.00179 * 14 12 10 16 16 H 1.48503 * 109.47092 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47213 * 299.99697 * 14 12 10 18 18 C 1.34772 * 120.00596 * 173.11460 * 8 7 6 19 19 O 1.21301 * 119.99712 * 4.68626 * 18 8 7 20 20 C 1.50695 * 120.00337 * 184.69316 * 18 8 7 21 21 O 1.42900 * 109.47279 * 175.32952 * 20 18 8 22 22 C 1.42904 * 114.00160 * 205.52387 * 21 20 18 23 23 O 1.42903 * 109.47101 * 295.32935 * 20 18 8 24 24 C 1.42895 * 114.00134 * 169.36629 * 23 20 18 25 25 C 1.38851 * 119.97174 * 359.70398 * 7 6 5 26 26 C 1.38093 * 119.98286 * 0.02562 * 25 7 6 27 27 H 1.08997 * 109.47044 * 299.99798 * 1 2 3 28 28 H 1.08997 * 109.47324 * 59.99802 * 1 2 3 29 29 H 1.09000 * 109.46761 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46881 * 240.00185 * 2 1 3 31 31 H 1.09002 * 109.47755 * 120.00261 * 2 1 3 32 32 H 1.07993 * 119.99912 * 359.97438 * 5 4 3 33 33 H 1.07994 * 120.01126 * 180.27343 * 6 5 4 34 34 H 1.09000 * 109.47516 * 208.19526 * 9 8 7 35 35 H 1.09003 * 109.47178 * 328.19922 * 9 8 7 36 36 H 0.96998 * 120.00242 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.46919 * 55.32725 * 20 18 8 38 38 H 1.09000 * 109.46903 * 306.09926 * 22 21 20 39 39 H 1.09002 * 109.47233 * 66.09207 * 22 21 20 40 40 H 1.08998 * 109.47304 * 186.09958 * 22 21 20 41 41 H 1.09007 * 109.47055 * 72.09101 * 24 23 20 42 42 H 1.08994 * 109.47551 * 192.09421 * 24 23 20 43 43 H 1.09002 * 109.47109 * 312.09505 * 24 23 20 44 44 H 1.07999 * 120.00753 * 179.97438 * 25 7 6 45 45 H 1.07999 * 119.98865 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3543 1.5254 -0.0005 5 6 4.1990 0.4250 0.0046 6 6 5.5681 0.6052 -0.0016 7 6 6.0992 1.8881 -0.0011 8 7 7.4882 2.0718 -0.0008 9 6 8.3794 0.9190 0.1513 10 6 8.6721 0.3281 -1.2038 11 1 8.2380 0.7676 -2.0897 12 6 9.4940 -0.7736 -1.3126 13 7 10.0222 -1.3090 -0.2338 14 14 9.8573 -1.5055 -2.9924 15 1 10.5129 -0.4830 -3.8466 16 1 10.7596 -2.6748 -2.8382 17 1 8.5876 -1.9410 -3.6277 18 6 8.0045 3.3088 -0.1402 19 8 7.2685 4.2722 -0.1806 20 6 9.4961 3.4953 -0.2461 21 8 9.7877 4.8720 -0.4946 22 6 11.0306 5.0912 -1.1649 23 8 10.1148 3.0906 0.9769 24 6 11.5389 2.9987 0.9052 25 6 5.2531 2.9891 -0.0006 26 6 3.8842 2.8074 0.0000 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.7859 -0.5728 0.0095 33 1 6.2257 -0.2515 -0.0021 34 1 9.3114 1.2392 0.6171 35 1 7.8987 0.1684 0.7788 36 1 10.6001 -2.0843 -0.3103 37 1 9.8808 2.8887 -1.0659 38 1 11.8323 4.6002 -0.6134 39 1 10.9775 4.6790 -2.1726 40 1 11.2299 6.1613 -1.2201 41 1 11.9657 4.0005 0.8562 42 1 11.9150 2.4865 1.7908 43 1 11.8225 2.4390 0.0139 44 1 5.6655 3.9872 0.0002 45 1 3.2260 3.6637 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874340653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:08 Heat of formation + Delta-G solvation = -110.109518 kcal Electronic energy + Delta-G solvation = -28353.332459 eV Core-core repulsion = 24338.037408 eV Total energy + Delta-G solvation = -4015.295052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46689 -39.46438 -38.38297 -36.76571 -35.87558 -34.91310 -32.73538 -31.68850 -30.45628 -29.42989 -28.17996 -27.15770 -25.79079 -25.12090 -23.94716 -23.25528 -21.73125 -21.31533 -19.45698 -17.91979 -17.47706 -17.23612 -16.82031 -16.38700 -16.21486 -15.92053 -15.30514 -14.93041 -14.58785 -14.24554 -14.19227 -13.84939 -13.79535 -13.39166 -13.16462 -13.12915 -12.87005 -12.60635 -12.52197 -12.47609 -12.13322 -11.90789 -11.78798 -11.58413 -11.35728 -11.23019 -11.15962 -10.81966 -10.72451 -10.46662 -10.26797 -9.99671 -9.78045 -9.57917 -8.90428 -8.79299 -8.64920 -8.46105 -6.95553 -6.30260 -4.40438 1.81664 1.89377 2.88809 3.12456 3.14211 3.20362 3.25046 3.48406 4.16110 4.19273 4.31408 4.44164 4.92385 4.95044 4.99065 5.03575 5.20619 5.22725 5.29735 5.35887 5.42931 5.45709 5.50623 5.53118 5.63206 5.73393 5.74490 5.80500 5.94688 5.97697 6.02056 6.13535 6.38118 6.58660 6.77447 6.85944 6.87747 7.11203 7.12714 7.18668 7.22385 7.60016 7.63714 7.86128 7.86797 8.04203 8.60081 8.72155 9.26981 10.74761 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010737 B = 0.004428 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.111173 B = 6321.861217 C = 8251.325183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.323 6.323 4 C 0.089 3.911 5 C -0.189 4.189 6 C -0.100 4.100 7 C 0.134 3.866 8 N -0.519 5.519 9 C 0.215 3.785 10 C -0.548 4.548 11 H 0.062 0.938 12 C 0.070 3.930 13 N -0.884 5.884 14 Si 0.895 3.105 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.538 3.462 19 O -0.517 6.517 20 C 0.238 3.762 21 O -0.375 6.375 22 C 0.014 3.986 23 O -0.372 6.372 24 C 0.025 3.975 25 C -0.139 4.139 26 C -0.136 4.136 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.267 0.733 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.185 0.815 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 3.567 0.431 5.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.237 6.237 4 C 0.044 3.956 5 C -0.208 4.208 6 C -0.120 4.120 7 C 0.040 3.960 8 N -0.240 5.240 9 C 0.097 3.903 10 C -0.586 4.586 11 H 0.080 0.920 12 C -0.134 4.134 13 N -0.522 5.522 14 Si 0.723 3.277 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.326 3.674 19 O -0.395 6.395 20 C 0.140 3.860 21 O -0.294 6.294 22 C -0.082 4.082 23 O -0.292 6.292 24 C -0.070 4.070 25 C -0.158 4.158 26 C -0.155 4.155 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.201 0.799 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.164 4.145 0.707 6.659 hybrid contribution 0.880 -1.242 -1.295 1.999 sum -4.284 2.903 -0.588 5.208 Atomic orbital electron populations 1.21756 0.93288 1.02459 1.03233 1.22674 0.95321 0.82810 1.01289 1.86017 1.19685 1.28415 1.89630 1.18980 0.81643 0.94391 1.00584 1.20950 0.93586 0.97566 1.08736 1.20924 0.94497 0.96578 1.00027 1.17939 0.82631 0.93957 1.01522 1.45788 1.04938 1.08817 1.64411 1.20002 0.89847 0.82238 0.98246 1.21407 1.30420 1.14090 0.92696 0.92004 1.24895 0.95253 0.96213 0.97016 1.69918 1.31605 1.22663 1.27971 0.86590 0.78551 0.78759 0.83845 1.20093 1.20985 1.19930 1.19567 0.88291 0.82676 0.76865 1.90275 1.58692 1.40665 1.49889 1.22956 0.91391 0.82675 0.89006 1.88063 1.38357 1.25286 1.77680 1.23179 0.86091 1.02641 0.96320 1.88083 1.20248 1.86618 1.34262 1.23006 0.80757 0.99975 1.03303 1.22645 0.91612 1.02065 0.99502 1.20344 0.94851 0.94170 1.06170 0.91730 0.91736 0.90724 0.92298 0.92311 0.85844 0.83881 0.91282 0.93549 0.92273 0.88643 0.92911 0.93551 0.89295 0.93688 0.89252 0.92995 0.79853 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.05 0.64 5.46 37.16 0.20 0.85 16 3 O -0.32 -5.01 10.14 -19.65 -0.20 -5.21 16 4 C 0.09 1.54 6.69 -39.23 -0.26 1.28 16 5 C -0.19 -3.29 9.03 -39.45 -0.36 -3.65 16 6 C -0.10 -1.99 9.11 -39.41 -0.36 -2.35 16 7 C 0.13 2.86 6.50 -83.62 -0.54 2.32 16 8 N -0.52 -11.53 2.69 -114.69 -0.31 -11.84 16 9 C 0.22 5.05 4.24 -5.19 -0.02 5.03 16 10 C -0.55 -13.59 8.87 -34.44 -0.31 -13.90 16 11 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 12 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.88 -22.94 13.29 55.43 0.74 -22.20 16 14 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.54 11.85 7.35 -10.99 -0.08 11.77 16 19 O -0.52 -11.82 12.91 -14.33 -0.18 -12.00 16 20 C 0.24 4.69 2.34 36.00 0.08 4.77 16 21 O -0.37 -6.88 10.08 -66.26 -0.67 -7.55 16 22 C 0.01 0.18 10.59 101.05 1.07 1.25 16 23 O -0.37 -7.16 8.49 -59.04 -0.50 -7.67 16 24 C 0.03 0.38 9.72 101.05 0.98 1.36 16 25 C -0.14 -2.78 9.05 -39.41 -0.36 -3.14 16 26 C -0.14 -2.44 9.98 -39.46 -0.39 -2.83 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 31 H 0.06 0.65 7.65 -51.93 -0.40 0.26 16 32 H 0.12 1.82 6.29 -52.49 -0.33 1.49 16 33 H 0.14 2.99 6.22 -52.49 -0.33 2.66 16 34 H 0.07 1.67 5.30 -51.93 -0.28 1.39 16 35 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 36 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 37 H 0.10 1.87 7.33 -51.93 -0.38 1.49 16 38 H 0.05 0.62 4.63 -51.93 -0.24 0.38 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.57 6.00 -51.92 -0.31 0.26 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.77 7.93 -51.93 -0.41 0.35 16 44 H 0.19 3.86 4.53 -56.22 -0.25 3.61 16 45 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -29.21 366.31 -6.85 -36.07 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.17 Total: 6.87 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.05 Total: 3.45 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.43 Total: -34.04 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.55 Total: -32.43 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.21 -6.85 -36.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874340653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.044 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds