Wall clock time and date at job start Tue Mar 31 2020 13:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81398 * 109.47420 * 2 1 4 4 C 1.81399 * 102.99967 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47010 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47058 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.46848 * 55.00094 * 6 5 4 8 8 C 1.52996 * 109.46947 * 175.00004 * 6 5 4 9 9 N 1.46503 * 109.46934 * 295.00159 * 6 5 4 10 10 C 1.34777 * 119.99766 * 155.00305 * 9 6 5 11 11 O 1.21580 * 120.00079 * 359.97438 * 10 9 6 12 12 N 1.34772 * 120.00271 * 179.97438 * 10 9 6 13 13 C 1.39245 * 120.00505 * 174.84491 * 12 10 9 14 14 C 1.39682 * 119.57584 * 185.33480 * 13 12 10 15 15 C 1.38647 * 119.49599 * 179.97438 * 14 13 12 16 16 C 1.38356 * 118.67046 * 359.97438 * 15 14 13 17 17 C 1.40580 * 119.12811 * 359.97438 * 16 15 14 18 18 C 1.41332 * 119.78332 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00287 * 0.02562 * 18 17 16 20 20 C 1.40026 * 119.99768 * 179.97438 * 18 17 16 21 21 N 1.30742 * 120.00224 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00110 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47353 * 89.99931 * 22 20 18 24 24 H 1.48500 * 109.47300 * 210.00518 * 22 20 18 25 25 H 1.48508 * 109.47191 * 330.00038 * 22 20 18 26 26 N 1.31902 * 119.57000 * 5.05647 * 13 12 10 27 27 H 1.08991 * 109.46974 * 300.00282 * 1 2 3 28 28 H 1.09008 * 109.46790 * 60.00040 * 1 2 3 29 29 H 1.08997 * 109.47012 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47025 * 239.99530 * 2 1 3 31 31 H 1.09008 * 109.47014 * 120.00464 * 2 1 3 32 32 H 1.08997 * 109.47540 * 299.99874 * 4 3 2 33 33 H 1.09001 * 109.47171 * 59.99979 * 4 3 2 34 34 H 1.08997 * 109.47272 * 299.99980 * 5 4 3 35 35 H 1.09004 * 109.46977 * 60.00400 * 5 4 3 36 36 H 1.09004 * 109.47273 * 60.00350 * 8 6 5 37 37 H 1.09005 * 109.47067 * 180.02562 * 8 6 5 38 38 H 1.09005 * 109.47214 * 299.99882 * 8 6 5 39 39 H 0.96990 * 120.00046 * 334.99501 * 9 6 5 40 40 H 0.97001 * 119.99618 * 354.84315 * 12 10 9 41 41 H 1.07995 * 120.25288 * 359.94946 * 14 13 12 42 42 H 1.08001 * 120.66562 * 180.02562 * 15 14 13 43 43 H 1.07995 * 120.43641 * 179.97438 * 16 15 14 44 44 H 0.97001 * 120.00140 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.9372 1.5057 0.0008 5 6 4.6066 2.8815 0.0015 6 6 6.1269 2.7090 0.0015 7 1 6.4214 2.0827 -0.8406 8 6 6.7956 4.0794 -0.1235 9 7 6.5461 2.0732 1.2531 10 6 7.6965 1.3725 1.3006 11 8 8.3859 1.2677 0.3047 12 7 8.0825 0.7881 2.4520 13 6 9.2133 -0.0241 2.4756 14 6 9.5420 -0.7144 3.6446 15 6 10.6680 -1.5230 3.6662 16 6 11.4363 -1.6219 2.5198 17 6 11.0522 -0.9029 1.3745 18 6 11.8265 -0.9942 0.1957 19 1 12.7100 -1.6152 0.1767 20 6 11.4477 -0.2804 -0.9478 21 7 10.3780 0.4710 -0.9250 22 14 12.4716 -0.4005 -2.5056 23 1 11.9708 -1.5206 -3.3421 24 1 12.3666 0.8707 -3.2662 25 1 13.8915 -0.6469 -2.1471 26 7 9.9571 -0.1360 1.3921 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 4.2400 0.9543 0.8909 33 1 4.2407 0.9540 -0.8890 34 1 4.3039 3.4333 -0.8884 35 1 4.3031 3.4327 0.8916 36 1 6.5010 4.7056 0.7187 37 1 7.8787 3.9564 -0.1239 38 1 6.4836 4.5523 -1.0547 39 1 5.9960 2.1567 2.0475 40 1 7.5726 0.9333 3.2643 41 1 8.9240 -0.6186 4.5251 42 1 10.9396 -2.0656 4.5597 43 1 12.3195 -2.2433 2.5050 44 1 10.1158 0.9657 -1.7170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881153068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:27 Heat of formation + Delta-G solvation = 14.965222 kcal Electronic energy + Delta-G solvation = -24938.755938 eV Core-core repulsion = 21403.930156 eV Total energy + Delta-G solvation = -3534.825782 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.57664 -37.94004 -36.14532 -33.97468 -33.05955 -32.95688 -31.94740 -30.26564 -29.84343 -28.55934 -25.49407 -24.66203 -23.29943 -22.30502 -21.29386 -20.56044 -19.80524 -18.05759 -17.11919 -16.42599 -16.28454 -15.61074 -15.19920 -14.83596 -14.66455 -14.44293 -14.39483 -14.11732 -13.78137 -13.56739 -13.16674 -12.84514 -12.78508 -12.70547 -12.19339 -11.99032 -11.96771 -11.84457 -11.79211 -11.42988 -11.18807 -11.05647 -10.92503 -10.62826 -10.62045 -10.43612 -10.14251 -9.90219 -9.67172 -9.07373 -8.99902 -8.46485 -7.92337 -7.87218 -7.17886 -6.91173 -6.08132 -4.36102 1.45631 2.39959 2.86966 3.15507 3.19164 3.21501 3.27969 3.29830 4.09242 4.24339 4.62902 4.63174 4.68728 4.73485 4.85407 4.95292 5.00056 5.09135 5.41485 5.43746 5.46663 5.47836 5.60505 5.68595 5.75133 5.87484 5.89238 6.07477 6.10722 6.22159 6.45081 6.50745 6.64851 6.83116 6.87887 7.04973 7.26944 7.39818 7.65104 7.77794 7.84487 8.20489 8.33157 8.69987 8.83513 9.09384 9.63768 10.30189 10.52599 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.003195 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.352313 B = 8761.747471 C = 9566.332971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 S -0.277 6.277 4 C -0.079 4.079 5 C -0.107 4.107 6 C 0.172 3.828 7 H 0.090 0.910 8 C -0.161 4.161 9 N -0.756 5.756 10 C 0.663 3.337 11 O -0.461 6.461 12 N -0.674 5.674 13 C 0.387 3.613 14 C -0.359 4.359 15 C -0.036 4.036 16 C -0.307 4.307 17 C 0.271 3.729 18 C -0.425 4.425 19 H 0.081 0.919 20 C 0.056 3.944 21 N -0.647 5.647 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.264 1.264 26 N -0.471 5.471 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.383 0.617 40 H 0.394 0.606 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 4.374 1.470 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.237 4.237 3 S -0.050 6.050 4 C -0.227 4.227 5 C -0.147 4.147 6 C 0.064 3.936 7 H 0.108 0.892 8 C -0.220 4.220 9 N -0.416 5.416 10 C 0.361 3.639 11 O -0.325 6.325 12 N -0.323 5.323 13 C 0.147 3.853 14 C -0.385 4.385 15 C -0.060 4.060 16 C -0.331 4.331 17 C 0.146 3.854 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.173 4.173 21 N -0.266 5.266 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.189 5.189 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.215 0.785 40 H 0.227 0.773 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.530 5.796 -0.483 17.523 hybrid contribution 0.800 -1.554 1.051 2.040 sum -15.730 4.242 0.567 16.302 Atomic orbital electron populations 1.21511 0.92325 1.02477 1.03089 1.23284 1.00054 0.95321 1.05054 1.86781 1.06894 1.13166 1.98182 1.23401 0.91797 1.01826 1.05669 1.21655 0.94266 0.94859 1.03887 1.20602 0.91046 0.94218 0.87739 0.89227 1.22177 1.02499 0.96246 1.01095 1.45435 1.24725 1.58545 1.12926 1.16455 0.81987 0.80232 0.85186 1.91385 1.50501 1.59005 1.31631 1.42583 1.28631 1.50593 1.10453 1.18344 0.86706 0.88923 0.91295 1.20436 1.05860 1.14089 0.98142 1.20543 0.93625 0.95489 0.96376 1.21618 1.04427 1.11156 0.95864 1.18397 0.88340 0.87027 0.91672 1.19565 1.08548 1.23240 0.94225 0.90047 1.26187 0.95542 0.95542 1.00035 1.70351 1.15626 1.13212 1.27374 0.86556 0.81197 0.78280 0.82144 1.19740 1.20362 1.18819 1.68702 1.06313 1.21591 1.22323 0.91736 0.91745 0.91172 0.90103 0.90097 0.89748 0.89871 0.89734 0.90690 0.92992 0.91282 0.92225 0.78513 0.77343 0.89241 0.88687 0.88642 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.92 37.16 0.37 -0.59 16 2 C -0.09 -0.77 6.66 37.16 0.25 -0.52 16 3 S -0.28 -2.86 21.74 -107.50 -2.34 -5.20 16 4 C -0.08 -0.83 5.83 37.16 0.22 -0.61 16 5 C -0.11 -1.07 4.76 -26.73 -0.13 -1.19 16 6 C 0.17 2.21 2.57 -67.93 -0.17 2.03 16 7 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 8 C -0.16 -2.04 9.48 37.16 0.35 -1.68 16 9 N -0.76 -10.66 4.53 -58.68 -0.27 -10.92 16 10 C 0.66 13.23 8.49 -86.92 -0.74 12.50 16 11 O -0.46 -11.50 11.76 5.30 0.06 -11.44 16 12 N -0.67 -13.27 5.39 -15.79 -0.09 -13.36 16 13 C 0.39 9.50 7.43 -155.00 -1.15 8.34 16 14 C -0.36 -8.13 9.95 -38.89 -0.39 -8.51 16 15 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 16 C -0.31 -7.83 9.83 -38.66 -0.38 -8.21 16 17 C 0.27 7.68 6.55 -84.99 -0.56 7.12 16 18 C -0.43 -11.80 9.14 -37.74 -0.34 -12.14 16 19 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 20 C 0.06 1.50 5.50 -17.35 -0.10 1.40 16 21 N -0.65 -17.98 8.98 55.55 0.50 -17.48 16 22 Si 0.89 19.39 29.56 -169.99 -5.02 14.36 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 26 N -0.47 -13.29 5.73 -10.26 -0.06 -13.35 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 31 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 33 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.38 4.24 8.62 -40.82 -0.35 3.89 16 40 H 0.39 5.98 8.71 -40.82 -0.36 5.62 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 44 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -32.69 377.82 -11.66 -44.35 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.97 Total: 10.63 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.17 Total: -3.29 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.09 Total: -55.11 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.06 Total: -11.44 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -2.34 Total: -5.20 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.69 -11.66 -44.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.313 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds