Wall clock time and date at job start Tue Mar 31 2020 13:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81402 * 109.46743 * 2 1 4 4 C 1.81399 * 103.00041 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46899 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47080 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46815 * 305.00056 * 6 5 4 8 8 C 1.52995 * 109.47460 * 185.00486 * 6 5 4 9 9 N 1.46495 * 109.47282 * 64.99743 * 6 5 4 10 10 C 1.34778 * 120.00368 * 205.00531 * 9 6 5 11 11 O 1.21581 * 119.99810 * 359.97438 * 10 9 6 12 12 N 1.34779 * 119.99933 * 180.02562 * 10 9 6 13 13 C 1.39249 * 119.99562 * 183.70446 * 12 10 9 14 14 C 1.39679 * 119.57743 * 339.04298 * 13 12 10 15 15 C 1.38644 * 119.49576 * 179.97438 * 14 13 12 16 16 C 1.38354 * 118.67373 * 0.02562 * 15 14 13 17 17 C 1.40577 * 119.12795 * 0.02562 * 16 15 14 18 18 C 1.41329 * 119.78746 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00086 * 5.15477 * 18 17 16 20 20 C 1.40031 * 120.00017 * 185.16319 * 18 17 16 21 21 N 1.30745 * 119.99832 * 354.84800 * 20 18 17 22 22 Si 1.86804 * 120.00006 * 174.85523 * 20 18 17 23 23 H 1.48494 * 109.47092 * 94.99272 * 22 20 18 24 24 H 1.48495 * 109.46653 * 214.99424 * 22 20 18 25 25 H 1.48495 * 109.46802 * 334.99102 * 22 20 18 26 26 N 1.31905 * 119.56940 * 158.76967 * 13 12 10 27 27 H 1.09004 * 109.47531 * 299.99395 * 1 2 3 28 28 H 1.08994 * 109.47433 * 59.99818 * 1 2 3 29 29 H 1.09008 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47186 * 240.00878 * 2 1 3 31 31 H 1.08994 * 109.47433 * 120.00182 * 2 1 3 32 32 H 1.08999 * 109.47318 * 60.00343 * 4 3 2 33 33 H 1.08997 * 109.47004 * 300.00160 * 4 3 2 34 34 H 1.09002 * 109.47499 * 60.00758 * 5 4 3 35 35 H 1.08997 * 109.47318 * 299.99838 * 5 4 3 36 36 H 1.09000 * 109.46755 * 299.99606 * 8 6 5 37 37 H 1.09000 * 109.47409 * 59.99305 * 8 6 5 38 38 H 1.08999 * 109.47594 * 180.02562 * 8 6 5 39 39 H 0.97005 * 119.99766 * 25.00314 * 9 6 5 40 40 H 0.97001 * 120.00088 * 3.70556 * 12 10 9 41 41 H 1.08004 * 120.25687 * 359.97438 * 14 13 12 42 42 H 1.08005 * 120.66831 * 180.02562 * 15 14 13 43 43 H 1.07993 * 120.43713 * 179.97438 * 16 15 14 44 44 H 0.97001 * 119.99651 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1345 1.7103 0.0000 4 6 3.9370 1.5060 -0.0008 5 6 4.6062 2.8819 -0.0002 6 6 6.1265 2.7096 -0.0015 7 1 6.4217 2.0823 0.8396 8 6 6.7952 4.0799 0.1249 9 7 6.5450 2.0756 -1.2541 10 6 7.6953 1.3750 -1.3033 11 8 8.3859 1.2696 -0.3082 12 7 8.0806 0.7921 -2.4558 13 6 9.2285 0.0044 -2.4879 14 6 10.1998 0.1608 -1.4965 15 6 11.3418 -0.6247 -1.5297 16 6 11.4845 -1.5456 -2.5523 17 6 10.4718 -1.6548 -3.5212 18 6 10.6030 -2.5912 -4.5715 19 1 11.4372 -3.2771 -4.5825 20 6 9.6515 -2.6297 -5.5981 21 7 8.5893 -1.8700 -5.5338 22 14 9.8996 -3.7666 -7.0595 23 1 9.1764 -5.0418 -6.8229 24 1 9.3711 -3.1181 -8.2864 25 1 11.3484 -4.0435 -7.2307 26 7 9.3818 -0.8836 -3.4511 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 4.2398 0.9547 -0.8910 33 1 4.2405 0.9544 0.8889 34 1 4.3035 3.4328 0.8903 35 1 4.3027 3.4339 -0.8897 36 1 6.5000 4.7071 -0.7162 37 1 6.4838 4.5516 1.0568 38 1 7.8783 3.9572 0.1235 39 1 5.9942 2.1599 -2.0481 40 1 7.5583 0.9213 -3.2630 41 1 10.0625 0.8881 -0.7099 42 1 12.1048 -0.5199 -0.7725 43 1 12.3628 -2.1718 -2.6060 44 1 7.9300 -1.8970 -6.2448 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881153070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:30 Heat of formation + Delta-G solvation = -0.158278 kcal Electronic energy + Delta-G solvation = -24380.019531 eV Core-core repulsion = 20844.537945 eV Total energy + Delta-G solvation = -3535.481586 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14515 -38.10265 -36.53942 -34.19383 -33.32994 -33.08176 -32.24974 -30.39574 -30.04605 -28.75558 -25.46102 -24.77875 -23.42764 -22.39364 -21.54800 -20.77163 -20.28934 -18.24699 -17.36786 -16.63958 -16.39615 -15.85439 -15.31850 -15.11309 -14.84072 -14.73111 -14.58341 -14.26443 -14.15473 -13.77055 -13.49747 -12.96553 -12.91186 -12.78896 -12.28630 -12.21808 -12.10541 -11.97135 -11.87991 -11.56318 -11.35096 -11.23827 -11.10628 -10.91851 -10.82739 -10.65861 -10.20859 -10.11319 -9.81322 -9.23755 -9.00870 -8.96295 -8.01233 -7.92722 -7.66197 -7.06498 -6.41096 -4.48951 1.39183 2.33393 2.69133 2.93146 2.97333 3.08480 3.12081 3.26048 3.69953 3.95138 4.45032 4.55133 4.61155 4.64139 4.68654 4.76174 4.80312 5.07273 5.22579 5.30987 5.35848 5.41445 5.45945 5.51701 5.64586 5.73712 5.73875 5.90031 5.95460 6.17163 6.19658 6.44855 6.56339 6.75176 6.83553 6.98767 7.11890 7.24338 7.52819 7.64046 7.93411 8.09044 8.18833 8.45507 8.71390 8.91696 9.06047 10.06587 10.31876 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.002949 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.314251 B = 9491.423552 C =11363.983093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 S -0.273 6.273 4 C -0.083 4.083 5 C -0.109 4.109 6 C 0.167 3.833 7 H 0.091 0.909 8 C -0.163 4.163 9 N -0.745 5.745 10 C 0.707 3.293 11 O -0.570 6.570 12 N -0.659 5.659 13 C 0.371 3.629 14 C -0.313 4.313 15 C -0.051 4.051 16 C -0.291 4.291 17 C 0.279 3.721 18 C -0.437 4.437 19 H 0.085 0.915 20 C 0.072 3.928 21 N -0.724 5.724 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.261 1.261 26 N -0.509 5.509 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.394 0.606 40 H 0.403 0.597 41 H 0.140 0.860 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.800 7.943 7.163 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.237 4.237 3 S -0.047 6.047 4 C -0.231 4.231 5 C -0.148 4.148 6 C 0.060 3.940 7 H 0.109 0.891 8 C -0.222 4.222 9 N -0.402 5.402 10 C 0.407 3.593 11 O -0.447 6.447 12 N -0.305 5.305 13 C 0.136 3.864 14 C -0.338 4.338 15 C -0.076 4.076 16 C -0.313 4.313 17 C 0.153 3.847 18 C -0.469 4.469 19 H 0.103 0.897 20 C -0.153 4.153 21 N -0.346 5.346 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.185 1.185 26 N -0.227 5.227 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.228 0.772 40 H 0.237 0.763 41 H 0.157 0.843 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.647 8.719 7.349 18.563 hybrid contribution 0.878 -1.542 -0.918 1.998 sum -13.769 7.177 6.431 16.806 Atomic orbital electron populations 1.21513 0.92252 1.02567 1.03102 1.23299 1.00136 0.95151 1.05149 1.86787 1.06378 1.13326 1.98180 1.23407 0.92366 1.01633 1.05723 1.21661 0.93648 0.95170 1.04313 1.20744 0.91825 0.94377 0.87075 0.89105 1.22196 1.02159 0.96129 1.01740 1.45273 1.23897 1.57250 1.13765 1.15795 0.81360 0.78565 0.83550 1.90794 1.53546 1.65417 1.34896 1.42257 1.27663 1.49920 1.10694 1.18239 0.84513 0.90284 0.93357 1.21840 0.96742 1.09749 1.05486 1.20839 0.95810 0.94739 0.96204 1.21712 1.02492 1.06309 1.00834 1.18168 0.85768 0.89872 0.90917 1.19546 1.08184 1.15095 1.04051 0.89729 1.26030 0.94352 0.95512 0.99361 1.70128 1.05886 1.29203 1.29404 0.86336 0.79858 0.80375 0.80369 1.19608 1.20181 1.18512 1.68019 1.24132 1.07177 1.23410 0.91753 0.91681 0.91094 0.89943 0.90095 0.89630 0.89863 0.89368 0.90340 0.92501 0.91745 0.91464 0.77190 0.76260 0.84307 0.88411 0.88313 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.92 37.16 0.37 -0.58 16 2 C -0.09 -0.75 6.66 37.16 0.25 -0.50 16 3 S -0.27 -2.67 21.74 -107.50 -2.34 -5.00 16 4 C -0.08 -0.79 5.83 37.16 0.22 -0.57 16 5 C -0.11 -0.92 4.76 -26.73 -0.13 -1.04 16 6 C 0.17 1.79 2.57 -67.93 -0.17 1.62 16 7 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 8 C -0.16 -1.65 9.48 37.15 0.35 -1.30 16 9 N -0.74 -9.41 4.53 -58.68 -0.27 -9.67 16 10 C 0.71 12.77 8.43 -86.92 -0.73 12.03 16 11 O -0.57 -12.13 12.66 5.29 0.07 -12.06 16 12 N -0.66 -13.21 5.42 -15.78 -0.09 -13.29 16 13 C 0.37 9.25 7.51 -154.99 -1.16 8.08 16 14 C -0.31 -7.75 8.89 -38.89 -0.35 -8.10 16 15 C -0.05 -1.23 10.15 -39.39 -0.40 -1.63 16 16 C -0.29 -7.38 9.83 -38.66 -0.38 -7.76 16 17 C 0.28 7.75 6.55 -84.99 -0.56 7.19 16 18 C -0.44 -11.71 9.13 -37.74 -0.34 -12.05 16 19 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 20 C 0.07 1.81 5.49 -17.34 -0.10 1.71 16 21 N -0.72 -18.78 11.48 55.55 0.64 -18.14 16 22 Si 0.91 18.47 29.56 -169.99 -5.03 13.44 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 24 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 26 N -0.51 -13.92 7.91 -10.26 -0.08 -14.00 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 30 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.88 7.75 -51.92 -0.40 0.47 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.39 4.07 8.62 -40.82 -0.35 3.72 16 40 H 0.40 7.23 8.84 -40.82 -0.36 6.86 16 41 H 0.14 3.41 5.16 -52.92 -0.27 3.14 16 42 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 43 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 44 H 0.27 6.32 8.29 -40.82 -0.34 5.98 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -31.45 379.60 -11.33 -42.78 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -6.82 Total: 13.11 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.14 Total: -2.88 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.20 Total: -55.11 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.06 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.34 Total: -5.00 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.45 -11.33 -42.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.620 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds