Wall clock time and date at job start Tue Mar 31 2020 13:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81402 * 109.46743 * 2 1 4 4 C 1.81399 * 103.00041 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46899 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47080 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46815 * 305.00056 * 6 5 4 8 8 C 1.52995 * 109.47460 * 185.00486 * 6 5 4 9 9 N 1.46495 * 109.47282 * 64.99743 * 6 5 4 10 10 C 1.34778 * 120.00368 * 205.00531 * 9 6 5 11 11 O 1.21581 * 119.99810 * 359.97438 * 10 9 6 12 12 N 1.34779 * 119.99933 * 180.02562 * 10 9 6 13 13 C 1.39249 * 119.99562 * 183.70446 * 12 10 9 14 14 C 1.39679 * 119.57743 * 339.04298 * 13 12 10 15 15 C 1.38644 * 119.49576 * 179.97438 * 14 13 12 16 16 C 1.38354 * 118.67373 * 0.02562 * 15 14 13 17 17 C 1.40577 * 119.12795 * 0.02562 * 16 15 14 18 18 C 1.41329 * 119.78746 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00086 * 5.15477 * 18 17 16 20 20 C 1.40031 * 120.00017 * 185.16319 * 18 17 16 21 21 N 1.30745 * 119.99832 * 354.84800 * 20 18 17 22 22 Si 1.86804 * 120.00006 * 174.85523 * 20 18 17 23 23 H 1.48494 * 109.47092 * 94.99272 * 22 20 18 24 24 H 1.48495 * 109.46653 * 214.99424 * 22 20 18 25 25 H 1.48495 * 109.46802 * 334.99102 * 22 20 18 26 26 N 1.31905 * 119.56940 * 158.76967 * 13 12 10 27 27 H 1.09004 * 109.47531 * 299.99395 * 1 2 3 28 28 H 1.08994 * 109.47433 * 59.99818 * 1 2 3 29 29 H 1.09008 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47186 * 240.00878 * 2 1 3 31 31 H 1.08994 * 109.47433 * 120.00182 * 2 1 3 32 32 H 1.08999 * 109.47318 * 60.00343 * 4 3 2 33 33 H 1.08997 * 109.47004 * 300.00160 * 4 3 2 34 34 H 1.09002 * 109.47499 * 60.00758 * 5 4 3 35 35 H 1.08997 * 109.47318 * 299.99838 * 5 4 3 36 36 H 1.09000 * 109.46755 * 299.99606 * 8 6 5 37 37 H 1.09000 * 109.47409 * 59.99305 * 8 6 5 38 38 H 1.08999 * 109.47594 * 180.02562 * 8 6 5 39 39 H 0.97005 * 119.99766 * 25.00314 * 9 6 5 40 40 H 0.97001 * 120.00088 * 3.70556 * 12 10 9 41 41 H 1.08004 * 120.25687 * 359.97438 * 14 13 12 42 42 H 1.08005 * 120.66831 * 180.02562 * 15 14 13 43 43 H 1.07993 * 120.43713 * 179.97438 * 16 15 14 44 44 H 0.97001 * 119.99651 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1345 1.7103 0.0000 4 6 3.9370 1.5060 -0.0008 5 6 4.6062 2.8819 -0.0002 6 6 6.1265 2.7096 -0.0015 7 1 6.4217 2.0823 0.8396 8 6 6.7952 4.0799 0.1249 9 7 6.5450 2.0756 -1.2541 10 6 7.6953 1.3750 -1.3033 11 8 8.3859 1.2696 -0.3082 12 7 8.0806 0.7921 -2.4558 13 6 9.2285 0.0044 -2.4879 14 6 10.1998 0.1608 -1.4965 15 6 11.3418 -0.6247 -1.5297 16 6 11.4845 -1.5456 -2.5523 17 6 10.4718 -1.6548 -3.5212 18 6 10.6030 -2.5912 -4.5715 19 1 11.4372 -3.2771 -4.5825 20 6 9.6515 -2.6297 -5.5981 21 7 8.5893 -1.8700 -5.5338 22 14 9.8996 -3.7666 -7.0595 23 1 9.1764 -5.0418 -6.8229 24 1 9.3711 -3.1181 -8.2864 25 1 11.3484 -4.0435 -7.2307 26 7 9.3818 -0.8836 -3.4511 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 4.2398 0.9547 -0.8910 33 1 4.2405 0.9544 0.8889 34 1 4.3035 3.4328 0.8903 35 1 4.3027 3.4339 -0.8897 36 1 6.5000 4.7071 -0.7162 37 1 6.4838 4.5516 1.0568 38 1 7.8783 3.9572 0.1235 39 1 5.9942 2.1599 -2.0481 40 1 7.5583 0.9213 -3.2630 41 1 10.0625 0.8881 -0.7099 42 1 12.1048 -0.5199 -0.7725 43 1 12.3628 -2.1718 -2.6060 44 1 7.9300 -1.8970 -6.2448 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881153070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:29 Heat of formation + Delta-G solvation = -17.887336 kcal Electronic energy + Delta-G solvation = -24380.788320 eV Core-core repulsion = 20844.537945 eV Total energy + Delta-G solvation = -3536.250376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65272 -39.82521 -37.74404 -35.92021 -35.13463 -33.69453 -33.39769 -32.30713 -31.24015 -30.33203 -27.37851 -25.56577 -24.41860 -23.64066 -23.45661 -21.98219 -21.71730 -19.83233 -19.11440 -18.19956 -17.25436 -17.07762 -16.69788 -16.45443 -16.26003 -15.95346 -15.87004 -15.57088 -15.13487 -15.08806 -14.73913 -14.63391 -14.23313 -13.81521 -13.74275 -13.48902 -13.11505 -12.92154 -12.88756 -12.81198 -12.65945 -12.57988 -12.52634 -12.28585 -12.10282 -11.84546 -11.63856 -11.56480 -11.04039 -10.95704 -10.70233 -10.18550 -9.95607 -9.62084 -8.93691 -8.69833 -8.30188 -6.49260 0.66145 0.83908 1.13349 1.42949 1.53181 1.57109 1.58583 1.59856 2.14952 2.24816 2.89131 3.17918 3.69725 3.88033 3.91622 3.94306 3.97831 4.05486 4.33952 4.36097 4.46921 4.48801 4.57116 4.65314 4.78631 4.79504 4.84497 4.88096 4.88865 4.92289 4.98055 5.05499 5.11199 5.19002 5.25145 5.33854 5.56073 5.61199 5.70532 5.89604 6.00883 6.23030 6.30710 6.75551 6.91702 7.05526 7.53799 8.11814 8.45653 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.002949 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.314251 B = 9491.423552 C =11363.983093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 S -0.289 6.289 4 C -0.080 4.080 5 C -0.095 4.095 6 C 0.166 3.834 7 H 0.072 0.928 8 C -0.158 4.158 9 N -0.721 5.721 10 C 0.707 3.293 11 O -0.602 6.602 12 N -0.657 5.657 13 C 0.364 3.636 14 C -0.328 4.328 15 C -0.050 4.050 16 C -0.310 4.310 17 C 0.245 3.755 18 C -0.467 4.467 19 H 0.090 0.910 20 C 0.027 3.973 21 N -0.753 5.753 22 Si 0.988 3.012 23 H -0.265 1.265 24 H -0.267 1.267 25 H -0.257 1.257 26 N -0.534 5.534 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.037 0.963 39 H 0.409 0.591 40 H 0.411 0.589 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.112 0.888 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.059 8.257 6.711 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.237 4.237 3 S -0.063 6.063 4 C -0.229 4.229 5 C -0.134 4.134 6 C 0.060 3.940 7 H 0.090 0.910 8 C -0.217 4.217 9 N -0.378 5.378 10 C 0.407 3.593 11 O -0.481 6.481 12 N -0.304 5.304 13 C 0.127 3.873 14 C -0.353 4.353 15 C -0.074 4.074 16 C -0.333 4.333 17 C 0.118 3.882 18 C -0.499 4.499 19 H 0.108 0.892 20 C -0.195 4.195 21 N -0.375 5.375 22 Si 0.808 3.192 23 H -0.189 1.189 24 H -0.192 1.192 25 H -0.181 1.181 26 N -0.254 5.254 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.056 0.944 39 H 0.245 0.755 40 H 0.247 0.753 41 H 0.159 0.841 42 H 0.147 0.853 43 H 0.130 0.870 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.958 9.083 6.912 19.619 hybrid contribution 1.185 -1.580 -0.689 2.092 sum -14.773 7.502 6.223 17.699 Atomic orbital electron populations 1.21516 0.91087 1.03488 1.03042 1.23383 1.01121 0.94008 1.05165 1.86803 1.06465 1.14822 1.98181 1.23368 0.92419 1.02085 1.04980 1.21580 0.91259 0.94842 1.05729 1.20907 0.93586 0.94260 0.85239 0.90990 1.22147 1.00101 0.95793 1.03660 1.45165 1.21946 1.55476 1.15247 1.15931 0.82329 0.78627 0.82422 1.90753 1.54996 1.66649 1.35744 1.42172 1.26766 1.49608 1.11861 1.18565 0.85827 0.90087 0.92775 1.22052 0.97247 1.10242 1.05711 1.21196 0.96232 0.93696 0.96323 1.21884 1.02826 1.07395 1.01182 1.18689 0.86718 0.90706 0.92049 1.19922 1.09280 1.15646 1.05015 0.89156 1.26946 0.93595 0.97033 1.01941 1.70198 1.06531 1.30160 1.30624 0.85114 0.79881 0.77950 0.76250 1.18943 1.19171 1.18077 1.68050 1.24564 1.08188 1.24559 0.91630 0.91885 0.89667 0.90212 0.89803 0.90598 0.90408 0.87732 0.89055 0.91079 0.89444 0.94367 0.75463 0.75251 0.84120 0.85304 0.86987 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.92 71.98 0.71 -0.94 16 2 C -0.09 -1.39 6.66 71.98 0.48 -0.91 16 3 S -0.29 -5.25 21.74 -56.49 -1.23 -6.48 16 4 C -0.08 -1.42 5.83 71.98 0.42 -1.00 16 5 C -0.10 -1.40 4.76 30.60 0.15 -1.26 16 6 C 0.17 3.36 2.57 44.99 0.12 3.48 16 7 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 8 C -0.16 -2.94 9.48 71.98 0.68 -2.25 16 9 N -0.72 -17.62 4.53 -457.83 -2.08 -19.70 16 10 C 0.71 25.60 8.43 179.05 1.51 27.11 16 11 O -0.60 -26.00 12.66 -3.97 -0.05 -26.05 16 12 N -0.66 -26.66 5.42 -322.12 -1.75 -28.41 16 13 C 0.36 18.50 7.51 133.26 1.00 19.50 16 14 C -0.33 -16.47 8.89 22.72 0.20 -16.26 16 15 C -0.05 -2.41 10.15 22.39 0.23 -2.18 16 16 C -0.31 -16.02 9.83 22.87 0.22 -15.79 16 17 C 0.24 13.91 6.55 40.19 0.26 14.18 16 18 C -0.47 -25.43 9.13 23.47 0.21 -25.22 16 19 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 20 C 0.03 1.34 5.49 85.29 0.47 1.81 16 21 N -0.75 -39.31 11.48 21.84 0.25 -39.06 16 22 Si 0.99 37.54 29.56 68.60 2.03 39.57 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 24 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 25 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 26 N -0.53 -29.94 7.91 -186.36 -1.47 -31.42 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.49 7.75 -2.39 -0.02 1.47 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.41 7.84 8.62 -92.70 -0.80 7.04 16 40 H 0.41 14.89 8.84 -92.71 -0.82 14.07 16 41 H 0.14 7.02 5.16 -9.85 -0.05 6.96 16 42 H 0.13 5.24 8.06 -2.91 -0.02 5.22 16 43 H 0.11 5.29 8.06 -2.91 -0.02 5.26 16 44 H 0.28 13.01 8.29 -92.71 -0.77 12.24 16 Total: -1.00 -69.17 379.60 1.73 -67.44 By element: Atomic # 1 Polarization: 44.49 SS G_CDS: -0.64 Total: 43.85 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 6.67 Total: 0.26 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -5.04 Total: -118.59 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.23 Total: -6.48 kcal Total: -69.17 1.73 -67.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.549 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds