Wall clock time and date at job start Tue Mar 31 2020 14:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00115 * 2 1 4 4 C 1.52993 * 110.66058 * 61.73523 * 3 2 1 5 5 F 1.39898 * 109.47642 * 298.26751 * 4 3 2 6 6 F 1.39908 * 109.46966 * 58.26488 * 4 3 2 7 7 F 1.39903 * 109.47608 * 178.26004 * 4 3 2 8 8 C 1.54625 * 110.73996 * 298.54654 * 3 2 1 9 9 C 1.54000 * 105.04655 * 263.51407 * 8 3 2 10 10 N 1.47485 * 107.08386 * 1.30178 * 9 8 3 11 11 C 1.34779 * 127.03411 * 154.51661 * 10 9 8 12 12 O 1.21286 * 120.00040 * 180.02562 * 11 10 9 13 13 C 1.50698 * 120.00201 * 0.02967 * 11 10 9 14 14 C 1.52992 * 109.47592 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00327 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46828 * 90.00241 * 21 19 17 23 23 H 1.48494 * 109.47178 * 209.99936 * 21 19 17 24 24 H 1.48500 * 109.47075 * 330.00183 * 21 19 17 25 25 C 1.48116 * 105.93449 * 334.78439 * 10 9 8 26 26 H 1.09008 * 109.47162 * 59.99914 * 1 2 3 27 27 H 1.08993 * 109.47240 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47069 * 300.00161 * 1 2 3 29 29 H 1.09001 * 110.32514 * 144.61897 * 8 3 2 30 30 H 1.09002 * 110.40865 * 22.44751 * 8 3 2 31 31 H 1.09001 * 109.90977 * 241.94505 * 9 8 3 32 32 H 1.08992 * 110.07570 * 120.75447 * 9 8 3 33 33 H 1.09002 * 109.47210 * 59.99599 * 13 11 10 34 34 H 1.09001 * 109.46665 * 299.99857 * 13 11 10 35 35 H 1.09002 * 109.47103 * 59.99616 * 14 13 11 36 36 H 1.08998 * 109.46862 * 300.00428 * 14 13 11 37 37 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 38 38 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 39 39 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 40 40 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 41 41 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 42 42 H 1.08998 * 110.66914 * 157.50635 * 25 10 9 43 43 H 1.09004 * 110.66197 * 280.62274 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6105 2.0743 1.2608 5 9 0.2209 2.2334 1.2893 6 9 2.0214 1.3608 2.3920 7 9 2.2239 3.3317 1.2545 8 6 1.6017 2.0868 -1.2702 9 6 2.7717 1.8927 -2.2526 10 7 3.7603 1.0267 -1.5833 11 6 4.6672 0.2233 -2.1737 12 8 5.4236 -0.4388 -1.4951 13 6 4.7415 0.1476 -3.6769 14 6 5.8468 -0.8285 -4.0845 15 6 5.9217 -0.9058 -5.6107 16 6 7.0267 -1.8825 -6.0182 17 6 7.1009 -1.9581 -7.5216 18 1 6.4271 -1.3688 -8.1258 19 6 8.0290 -2.7796 -8.1255 20 7 8.8499 -3.4968 -7.3897 21 14 8.1206 -2.8738 -9.9889 22 1 9.0700 -1.8479 -10.4903 23 1 8.5904 -4.2230 -10.3938 24 1 6.7741 -2.6253 -10.5638 25 6 3.5481 1.2155 -0.1296 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.4726 3.1442 -1.0392 30 1 0.6831 1.6765 -1.6898 31 1 3.2222 2.8569 -2.4883 32 1 2.4179 1.4151 -3.1662 33 1 4.9632 1.1358 -4.0799 34 1 3.7862 -0.1995 -4.0708 35 1 5.6255 -1.8168 -3.6815 36 1 6.8018 -0.4811 -3.6905 37 1 6.1428 0.0824 -6.0141 38 1 4.9666 -1.2535 -6.0042 39 1 7.9820 -1.5352 -5.6247 40 1 6.8052 -2.8705 -5.6149 41 1 9.5031 -4.0745 -7.8146 42 1 3.9310 0.3615 0.4292 43 1 4.0154 2.1397 0.2105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881689019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:29 Heat of formation + Delta-G solvation = -236.309777 kcal Electronic energy + Delta-G solvation = -28065.741804 eV Core-core repulsion = 23503.117558 eV Total energy + Delta-G solvation = -4562.624246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.75552 -48.30694 -48.13031 -40.66841 -38.94322 -36.59747 -34.90141 -32.68518 -31.97989 -30.31727 -29.64281 -27.16429 -26.78043 -25.23614 -23.95406 -22.16268 -21.48002 -20.03398 -19.64378 -19.30276 -18.86565 -18.39145 -17.35558 -16.33303 -16.18049 -15.98574 -15.89104 -15.40293 -15.36010 -15.00535 -14.94133 -14.84163 -14.53635 -14.41817 -14.31858 -14.28784 -13.82994 -13.41120 -13.20510 -12.90284 -12.61541 -12.57766 -12.21160 -12.14950 -11.88334 -11.66237 -11.62024 -11.47756 -10.98055 -10.53940 -10.50150 -10.42251 -10.38003 -9.89708 -9.60688 -9.22703 -9.03699 -8.97905 -8.29676 -5.94360 -3.96929 1.92001 2.59100 2.64305 2.68358 3.09031 3.18691 3.34444 3.40511 3.43536 3.52455 3.86908 3.99276 4.36481 4.49056 4.49917 4.58688 4.72633 4.83215 4.93436 5.01556 5.12768 5.22308 5.24239 5.28011 5.31989 5.40037 5.41419 5.74062 5.86828 6.13323 6.26468 6.29873 6.54361 6.83952 7.01251 7.19651 7.27724 7.75086 7.91143 8.06956 8.10449 8.48659 9.10835 9.66658 11.16982 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.032889 B = 0.002069 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.149510 B =13528.073419 C =13664.314457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.336 6.336 3 C 0.058 3.942 4 C 0.439 3.561 5 F -0.177 7.177 6 F -0.170 7.170 7 F -0.174 7.174 8 C -0.159 4.159 9 C 0.107 3.893 10 N -0.623 5.623 11 C 0.537 3.463 12 O -0.525 6.525 13 C -0.132 4.132 14 C -0.105 4.105 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.121 3.879 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.109 0.891 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.078 15.681 18.045 31.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.253 6.253 3 C 0.014 3.986 4 C 0.384 3.616 5 F -0.158 7.158 6 F -0.152 7.152 7 F -0.155 7.155 8 C -0.198 4.198 9 C -0.016 4.016 10 N -0.360 5.360 11 C 0.328 3.672 12 O -0.400 6.400 13 C -0.171 4.171 14 C -0.143 4.143 15 C -0.147 4.147 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.002 4.002 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.127 0.873 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.319 14.943 18.350 31.191 hybrid contribution -0.419 0.314 -0.705 0.878 sum -20.738 15.257 17.646 31.213 Atomic orbital electron populations 1.23459 0.79909 1.04563 1.02053 1.88231 1.20930 1.22188 1.93988 1.23716 0.98316 0.85945 0.90617 1.21182 0.74894 0.78569 0.87005 1.93118 1.30442 1.95370 1.96902 1.93241 1.89953 1.77849 1.54113 1.93205 1.82765 1.42854 1.96713 1.23225 1.00786 1.01681 0.94062 1.22031 0.87899 0.95474 0.96195 1.48762 1.36399 1.45078 1.05741 1.20870 0.78156 0.76883 0.91299 1.90737 1.40776 1.42470 1.65972 1.21786 1.02798 1.03087 0.89453 1.21485 0.96710 0.98147 0.97919 1.21643 1.00717 1.00554 0.91789 1.19097 0.92937 0.93905 0.95812 1.21280 1.17541 1.24895 0.92133 0.92766 1.25044 0.95775 0.95696 0.98069 1.69972 1.20799 1.27657 1.35028 0.86613 0.78222 0.77263 0.85995 1.20712 1.21262 1.19935 1.22223 0.88275 1.04755 0.84984 0.92687 0.88267 0.91610 0.88337 0.88010 0.90227 0.89355 0.89007 0.89041 0.91694 0.91688 0.93455 0.93473 0.96572 0.96560 0.93035 0.87313 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 10.06 101.05 1.02 0.99 16 2 O -0.34 -3.18 10.39 -35.23 -0.37 -3.54 16 3 C 0.06 0.46 0.60 -88.93 -0.05 0.41 16 4 C 0.44 3.43 2.26 37.15 0.08 3.51 16 5 F -0.18 -1.28 13.93 2.25 0.03 -1.25 16 6 F -0.17 -1.59 17.14 2.25 0.04 -1.55 16 7 F -0.17 -1.31 15.80 2.25 0.04 -1.27 16 8 C -0.16 -0.87 5.81 -25.36 -0.15 -1.02 16 9 C 0.11 0.71 6.76 -2.98 -0.02 0.69 16 10 N -0.62 -6.62 3.29 -169.98 -0.56 -7.18 16 11 C 0.54 7.65 7.89 -10.99 -0.09 7.56 16 12 O -0.53 -9.73 16.19 5.55 0.09 -9.64 16 13 C -0.13 -1.73 4.78 -27.89 -0.13 -1.87 16 14 C -0.10 -1.86 4.50 -26.74 -0.12 -1.98 16 15 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 21 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 25 C 0.12 1.16 6.09 -2.31 -0.01 1.15 16 26 H 0.05 0.26 6.17 -51.92 -0.32 -0.06 16 27 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.40 5.41 -51.93 -0.28 0.12 16 29 H 0.10 0.39 7.36 -51.93 -0.38 0.00 16 30 H 0.10 0.44 5.97 -51.93 -0.31 0.13 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.51 7.53 -51.93 -0.39 0.12 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.04 7.91 -51.93 -0.41 0.63 16 35 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.11 1.25 7.85 -51.93 -0.41 0.84 16 43 H 0.10 0.78 7.37 -51.93 -0.38 0.40 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -34.59 359.16 -5.99 -40.58 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -6.23 Total: -5.25 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.16 Total: -6.33 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.18 Total: -34.02 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.28 Total: -13.19 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.11 Total: -4.07 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.59 -5.99 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881689019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.732 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds