Wall clock time and date at job start Tue Mar 31 2020 14:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00115 * 2 1 4 4 C 1.52993 * 110.66058 * 61.73523 * 3 2 1 5 5 F 1.39898 * 109.47642 * 298.26751 * 4 3 2 6 6 F 1.39908 * 109.46966 * 58.26488 * 4 3 2 7 7 F 1.39903 * 109.47608 * 178.26004 * 4 3 2 8 8 C 1.54625 * 110.73996 * 298.54654 * 3 2 1 9 9 C 1.54000 * 105.04655 * 263.51407 * 8 3 2 10 10 N 1.47485 * 107.08386 * 1.30178 * 9 8 3 11 11 C 1.34779 * 127.03411 * 154.51661 * 10 9 8 12 12 O 1.21286 * 120.00040 * 180.02562 * 11 10 9 13 13 C 1.50698 * 120.00201 * 0.02967 * 11 10 9 14 14 C 1.52992 * 109.47592 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00327 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46828 * 90.00241 * 21 19 17 23 23 H 1.48494 * 109.47178 * 209.99936 * 21 19 17 24 24 H 1.48500 * 109.47075 * 330.00183 * 21 19 17 25 25 C 1.48116 * 105.93449 * 334.78439 * 10 9 8 26 26 H 1.09008 * 109.47162 * 59.99914 * 1 2 3 27 27 H 1.08993 * 109.47240 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47069 * 300.00161 * 1 2 3 29 29 H 1.09001 * 110.32514 * 144.61897 * 8 3 2 30 30 H 1.09002 * 110.40865 * 22.44751 * 8 3 2 31 31 H 1.09001 * 109.90977 * 241.94505 * 9 8 3 32 32 H 1.08992 * 110.07570 * 120.75447 * 9 8 3 33 33 H 1.09002 * 109.47210 * 59.99599 * 13 11 10 34 34 H 1.09001 * 109.46665 * 299.99857 * 13 11 10 35 35 H 1.09002 * 109.47103 * 59.99616 * 14 13 11 36 36 H 1.08998 * 109.46862 * 300.00428 * 14 13 11 37 37 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 38 38 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 39 39 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 40 40 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 41 41 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 42 42 H 1.08998 * 110.66914 * 157.50635 * 25 10 9 43 43 H 1.09004 * 110.66197 * 280.62274 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6105 2.0743 1.2608 5 9 0.2209 2.2334 1.2893 6 9 2.0214 1.3608 2.3920 7 9 2.2239 3.3317 1.2545 8 6 1.6017 2.0868 -1.2702 9 6 2.7717 1.8927 -2.2526 10 7 3.7603 1.0267 -1.5833 11 6 4.6672 0.2233 -2.1737 12 8 5.4236 -0.4388 -1.4951 13 6 4.7415 0.1476 -3.6769 14 6 5.8468 -0.8285 -4.0845 15 6 5.9217 -0.9058 -5.6107 16 6 7.0267 -1.8825 -6.0182 17 6 7.1009 -1.9581 -7.5216 18 1 6.4271 -1.3688 -8.1258 19 6 8.0290 -2.7796 -8.1255 20 7 8.8499 -3.4968 -7.3897 21 14 8.1206 -2.8738 -9.9889 22 1 9.0700 -1.8479 -10.4903 23 1 8.5904 -4.2230 -10.3938 24 1 6.7741 -2.6253 -10.5638 25 6 3.5481 1.2155 -0.1296 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.4726 3.1442 -1.0392 30 1 0.6831 1.6765 -1.6898 31 1 3.2222 2.8569 -2.4883 32 1 2.4179 1.4151 -3.1662 33 1 4.9632 1.1358 -4.0799 34 1 3.7862 -0.1995 -4.0708 35 1 5.6255 -1.8168 -3.6815 36 1 6.8018 -0.4811 -3.6905 37 1 6.1428 0.0824 -6.0141 38 1 4.9666 -1.2535 -6.0042 39 1 7.9820 -1.5352 -5.6247 40 1 6.8052 -2.8705 -5.6149 41 1 9.5031 -4.0745 -7.8146 42 1 3.9310 0.3615 0.4292 43 1 4.0154 2.1397 0.2105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881689019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:28 Heat of formation + Delta-G solvation = -258.945219 kcal Electronic energy + Delta-G solvation = -28066.723351 eV Core-core repulsion = 23503.117558 eV Total energy + Delta-G solvation = -4563.605792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.36989 -48.89564 -48.78376 -41.45203 -39.85433 -37.38002 -36.59949 -34.61422 -32.87723 -31.40758 -30.73979 -28.05485 -27.66831 -26.58083 -24.82124 -23.68674 -22.13869 -21.71462 -20.52743 -19.91750 -19.47828 -19.06565 -18.42216 -18.22515 -17.16226 -16.91892 -16.55289 -16.46179 -16.19414 -16.11015 -15.88548 -15.60474 -15.47844 -15.17554 -15.03016 -14.93626 -14.78670 -14.52790 -14.40768 -13.88264 -13.77898 -13.59722 -13.43038 -13.25829 -13.16499 -12.80896 -12.71137 -12.33999 -12.33192 -12.14230 -12.11723 -12.04773 -11.36130 -11.34507 -11.17191 -10.97043 -10.80844 -10.53743 -9.87322 -8.17347 -6.29534 1.26308 1.41455 1.43810 1.54818 1.56981 1.86548 2.09148 2.43042 2.47358 2.58757 2.93562 3.15477 3.26979 3.39209 3.70496 3.95533 4.00812 4.04168 4.13607 4.21972 4.26528 4.38188 4.44118 4.57711 4.61172 4.69163 4.71880 4.81464 4.84188 4.87852 4.94292 5.10833 5.19910 5.35294 5.38961 5.58298 5.73358 5.79914 5.89761 6.26580 6.36960 6.89303 7.07516 7.40158 8.95003 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.032889 B = 0.002069 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.149510 B =13528.073419 C =13664.314457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 O -0.364 6.364 3 C 0.059 3.941 4 C 0.442 3.558 5 F -0.171 7.171 6 F -0.184 7.184 7 F -0.171 7.171 8 C -0.152 4.152 9 C 0.098 3.902 10 N -0.619 5.619 11 C 0.533 3.467 12 O -0.585 6.585 13 C -0.119 4.119 14 C -0.097 4.097 15 C -0.094 4.094 16 C 0.018 3.982 17 C -0.540 4.540 18 H 0.068 0.932 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.970 3.030 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.258 1.258 25 C 0.114 3.886 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.061 0.939 39 H -0.016 1.016 40 H -0.017 1.017 41 H 0.262 0.738 42 H 0.079 0.921 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.609 18.057 16.248 33.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 O -0.283 6.283 3 C 0.016 3.984 4 C 0.387 3.613 5 F -0.152 7.152 6 F -0.165 7.165 7 F -0.152 7.152 8 C -0.189 4.189 9 C -0.023 4.023 10 N -0.353 5.353 11 C 0.324 3.676 12 O -0.464 6.464 13 C -0.158 4.158 14 C -0.136 4.136 15 C -0.131 4.131 16 C -0.019 4.019 17 C -0.578 4.578 18 H 0.086 0.914 19 C -0.205 4.205 20 N -0.580 5.580 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.182 1.182 25 C -0.010 4.010 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.003 0.997 40 H 0.002 0.998 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -22.916 17.374 16.557 33.183 hybrid contribution 0.342 -0.418 -0.056 0.543 sum -22.573 16.956 16.501 32.701 Atomic orbital electron populations 1.23621 0.78440 1.05303 1.03064 1.88201 1.22631 1.23227 1.94209 1.23677 0.96908 0.85992 0.91848 1.21159 0.75108 0.78532 0.86535 1.93129 1.29930 1.95340 1.96844 1.93217 1.90144 1.78238 1.54907 1.93211 1.82754 1.42573 1.96666 1.23304 1.00892 1.02618 0.92136 1.22431 0.87339 0.95871 0.96687 1.48704 1.35853 1.44174 1.06600 1.20986 0.78232 0.76777 0.91596 1.90717 1.43447 1.45194 1.67087 1.21645 1.01962 1.03212 0.88987 1.21270 0.97862 0.98463 0.95963 1.21431 0.98793 0.99436 0.93458 1.19065 0.93799 0.93871 0.95205 1.21761 1.17794 1.25021 0.93225 0.91427 1.26106 0.95251 0.95152 1.03994 1.70135 1.21674 1.28563 1.37594 0.85380 0.79029 0.77361 0.78858 1.19695 1.21074 1.18203 1.22310 0.90056 1.04309 0.84277 0.90638 0.87832 0.91546 0.86174 0.86358 0.87766 0.87751 0.85899 0.86312 0.94074 0.93776 0.91789 0.91980 0.99746 0.99827 0.92887 0.90222 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 10.06 113.37 1.14 1.04 16 2 O -0.36 -6.52 10.39 -148.98 -1.55 -8.07 16 3 C 0.06 0.84 0.60 -9.70 -0.01 0.84 16 4 C 0.44 6.23 2.26 71.98 0.16 6.40 16 5 F -0.17 -2.12 13.93 44.97 0.63 -1.49 16 6 F -0.18 -3.39 17.14 44.97 0.77 -2.62 16 7 F -0.17 -2.22 15.80 44.97 0.71 -1.51 16 8 C -0.15 -1.10 5.81 31.49 0.18 -0.91 16 9 C 0.10 0.91 6.76 86.53 0.58 1.50 16 10 N -0.62 -12.15 3.29 -810.09 -2.67 -14.82 16 11 C 0.53 14.93 7.89 87.66 0.69 15.62 16 12 O -0.59 -22.74 16.19 -3.05 -0.05 -22.79 16 13 C -0.12 -2.89 4.78 29.84 0.14 -2.74 16 14 C -0.10 -3.51 4.50 30.59 0.14 -3.38 16 15 C -0.09 -3.77 5.15 30.59 0.16 -3.61 16 16 C 0.02 0.97 4.97 29.85 0.15 1.12 16 17 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 18 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 19 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 20 N -0.94 -59.34 13.29 21.45 0.28 -59.06 16 21 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 25 C 0.11 2.13 6.09 86.61 0.53 2.66 16 26 H 0.08 0.49 6.17 -2.38 -0.01 0.47 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.70 5.41 -2.39 -0.01 0.69 16 29 H 0.12 0.40 7.36 -2.39 -0.02 0.38 16 30 H 0.12 0.50 5.97 -2.39 -0.01 0.49 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.69 7.53 -2.39 -0.02 0.68 16 33 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.12 2.28 7.91 -2.39 -0.02 2.26 16 35 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 36 H 0.04 1.74 8.10 -2.39 -0.02 1.73 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.08 1.96 7.85 -2.39 -0.02 1.94 16 43 H 0.12 1.71 7.37 -2.39 -0.02 1.70 16 Total: -1.00 -79.12 359.16 5.74 -73.38 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: 1.02 Total: 2.74 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 4.57 Total: -12.45 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -2.38 Total: -73.88 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.60 Total: -30.86 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 2.11 Total: -5.62 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -79.12 5.74 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881689019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.565 kcal (2) G-P(sol) polarization free energy of solvation -79.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds