Wall clock time and date at job start Tue Mar 31 2020 14:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99826 * 2 1 4 4 C 1.53000 * 110.91645 * 297.55064 * 3 2 1 5 5 F 1.39897 * 109.47026 * 182.44834 * 4 3 2 6 6 F 1.39899 * 109.46808 * 302.44928 * 4 3 2 7 7 F 1.39902 * 109.47206 * 62.44401 * 4 3 2 8 8 C 1.55158 * 111.00085 * 61.45299 * 3 2 1 9 9 C 1.54319 * 102.94144 * 82.57458 * 8 3 2 10 10 N 1.47021 * 107.27574 * 22.18705 * 9 8 3 11 11 C 1.34777 * 125.64819 * 181.02426 * 10 9 8 12 12 O 1.21279 * 119.99633 * 180.02562 * 11 10 9 13 13 C 1.50701 * 120.00115 * 0.02562 * 11 10 9 14 14 C 1.52997 * 109.47212 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 C 1.47419 * 108.69945 * 1.28925 * 10 9 8 26 26 H 1.09003 * 109.47150 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47413 * 300.00281 * 1 2 3 28 28 H 1.09000 * 109.46928 * 60.00416 * 1 2 3 29 29 H 1.08999 * 110.71999 * 324.20558 * 8 3 2 30 30 H 1.09003 * 110.86703 * 201.00405 * 8 3 2 31 31 H 1.09007 * 109.87793 * 262.77055 * 9 8 3 32 32 H 1.09001 * 109.88171 * 141.60987 * 9 8 3 33 33 H 1.09002 * 109.47060 * 60.00000 * 13 11 10 34 34 H 1.09001 * 109.46927 * 300.00196 * 13 11 10 35 35 H 1.09002 * 109.47153 * 60.00002 * 14 13 11 36 36 H 1.09001 * 109.46832 * 300.00193 * 14 13 11 37 37 H 1.09002 * 109.47103 * 59.99753 * 15 14 13 38 38 H 1.08998 * 109.46862 * 300.00565 * 15 14 13 39 39 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 40 40 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 41 41 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 42 42 H 1.09004 * 110.36787 * 94.48377 * 25 10 9 43 43 H 1.09001 * 110.36884 * 216.80608 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6285 2.0734 -1.2671 5 9 2.2572 3.3231 -1.2623 6 9 2.0381 1.3496 -2.3921 7 9 0.2411 2.2493 -1.3056 8 6 1.6040 2.0950 1.2724 9 6 2.6061 1.5858 2.3297 10 7 3.7697 1.0518 1.6069 11 6 4.8581 0.4941 2.1734 12 8 5.7626 0.0858 1.4762 13 6 4.9512 0.3779 3.6730 14 6 6.2766 -0.2858 4.0519 15 6 6.3709 -0.4044 5.5743 16 6 7.6960 -1.0687 5.9531 17 6 7.7891 -1.1849 7.4527 18 1 6.9835 -0.8217 8.0735 19 6 8.9024 -1.7559 8.0321 20 7 8.9833 -1.8578 9.3408 21 14 10.2954 -2.3848 6.9583 22 1 11.2782 -1.2944 6.7336 23 1 10.9662 -3.5240 7.6346 24 1 9.7495 -2.8359 5.6530 25 6 3.5515 1.2331 0.1603 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.5812 1.8566 1.5640 30 1 1.7192 3.1678 1.1170 31 1 2.1468 0.7978 2.9266 32 1 2.9156 2.4089 2.9739 33 1 4.1229 -0.2267 4.0427 34 1 4.9026 1.3717 4.1181 35 1 7.1046 0.3191 3.6822 36 1 6.3256 -1.2796 3.6066 37 1 5.5429 -1.0096 5.9435 38 1 6.3216 0.5891 6.0198 39 1 8.5243 -0.4640 5.5837 40 1 7.7447 -2.0623 5.5075 41 1 9.7667 -2.2592 9.7485 42 1 4.0145 2.1594 -0.1800 43 1 3.9504 0.3829 -0.3931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881689021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:32 Heat of formation + Delta-G solvation = -234.856520 kcal Electronic energy + Delta-G solvation = -28066.882380 eV Core-core repulsion = 23504.321152 eV Total energy + Delta-G solvation = -4562.561228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.78251 -48.33669 -48.16740 -40.75226 -39.03279 -36.62655 -35.04468 -32.66876 -32.07242 -30.44277 -29.97381 -27.26090 -26.98162 -25.40532 -23.80359 -22.01481 -21.53872 -20.03750 -19.67846 -19.33821 -18.84847 -18.54755 -17.42223 -16.62817 -16.29688 -16.18081 -16.03367 -15.45972 -15.32250 -15.05044 -14.97974 -14.86533 -14.57729 -14.35587 -14.33756 -14.16966 -13.90178 -13.43984 -13.32093 -13.14161 -12.64433 -12.56593 -12.38190 -12.29784 -12.09468 -11.96923 -11.74186 -11.53433 -11.11484 -10.74059 -10.53703 -10.47153 -10.04033 -9.82678 -9.64390 -9.44708 -9.11492 -9.02316 -8.48720 -6.00034 -3.97443 1.87221 2.54272 2.56724 2.62375 3.03095 3.11014 3.36141 3.43226 3.44761 3.49405 3.79170 3.92279 4.33072 4.46314 4.50850 4.54143 4.65545 4.75865 4.89608 4.98695 5.09986 5.14848 5.18758 5.20431 5.24217 5.34455 5.37295 5.70682 5.82214 6.02031 6.14551 6.17527 6.40614 6.67853 6.81274 6.99088 7.17796 7.38695 7.51516 7.85339 8.03445 8.58778 9.04919 9.63457 11.13465 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.031834 B = 0.002153 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.358703 B =13000.400220 C =13249.724216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.335 6.335 3 C 0.056 3.944 4 C 0.441 3.559 5 F -0.173 7.173 6 F -0.170 7.170 7 F -0.177 7.177 8 C -0.157 4.157 9 C 0.109 3.891 10 N -0.622 5.622 11 C 0.533 3.467 12 O -0.528 6.528 13 C -0.132 4.132 14 C -0.107 4.107 15 C -0.102 4.102 16 C -0.016 4.016 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 C 0.125 3.875 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.011 0.989 40 H 0.016 0.984 41 H 0.262 0.738 42 H 0.096 0.904 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.678 10.789 -22.435 33.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.253 6.253 3 C 0.013 3.987 4 C 0.386 3.614 5 F -0.155 7.155 6 F -0.151 7.151 7 F -0.158 7.158 8 C -0.195 4.195 9 C -0.014 4.014 10 N -0.358 5.358 11 C 0.324 3.676 12 O -0.403 6.403 13 C -0.172 4.172 14 C -0.145 4.145 15 C -0.139 4.139 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 C 0.001 3.999 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.114 0.886 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.877 10.288 -22.637 33.119 hybrid contribution 0.256 0.038 -0.721 0.766 sum -21.621 10.326 -23.358 33.462 Atomic orbital electron populations 1.23433 0.79723 1.04606 1.02062 1.88203 1.21052 1.21995 1.94009 1.23820 0.98016 0.86114 0.90781 1.21072 0.74828 0.78571 0.86968 1.93209 1.82085 1.43447 1.96711 1.93240 1.89995 1.77315 1.54595 1.93129 1.30538 1.95238 1.96899 1.23357 1.01688 1.01281 0.93138 1.21961 0.85487 0.99404 0.94519 1.48434 1.19548 1.62089 1.05752 1.20858 0.79648 0.75621 0.91477 1.90728 1.37458 1.47448 1.64703 1.21770 1.02130 1.03610 0.89659 1.21513 0.94245 1.00818 0.97964 1.21468 1.00036 1.00627 0.91812 1.19578 0.92901 0.95589 0.97237 1.21180 1.04908 1.39445 0.90177 0.91114 1.25044 0.98308 0.95446 0.94832 1.69921 1.29668 1.45529 1.09432 0.86773 0.82503 0.78754 0.81267 1.20321 1.21473 1.18872 1.22096 0.88385 1.04631 0.84745 0.88172 0.92602 0.91700 0.87754 0.88000 0.90108 0.89845 0.88843 0.88864 0.91701 0.91692 0.92820 0.92844 0.97041 0.96594 0.92823 0.88643 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.10 101.05 1.02 1.01 16 2 O -0.33 -2.83 10.43 -35.23 -0.37 -3.20 16 3 C 0.06 0.42 0.52 -88.35 -0.05 0.37 16 4 C 0.44 3.32 2.34 37.16 0.09 3.40 16 5 F -0.17 -1.30 15.74 2.25 0.04 -1.27 16 6 F -0.17 -1.54 17.17 2.25 0.04 -1.50 16 7 F -0.18 -1.21 14.05 2.25 0.03 -1.18 16 8 C -0.16 -0.79 5.74 -24.90 -0.14 -0.93 16 9 C 0.11 0.70 6.48 -3.07 -0.02 0.68 16 10 N -0.62 -6.33 3.32 -170.38 -0.57 -6.90 16 11 C 0.53 7.22 7.85 -10.98 -0.09 7.14 16 12 O -0.53 -9.33 16.24 5.56 0.09 -9.24 16 13 C -0.13 -1.64 4.89 -27.88 -0.14 -1.78 16 14 C -0.11 -1.79 4.50 -26.74 -0.12 -1.91 16 15 C -0.10 -1.98 5.15 -26.74 -0.14 -2.12 16 16 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 17 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.37 13.96 55.43 0.77 -27.60 16 21 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.26 -6.52 6.54 56.52 0.37 -6.16 16 25 C 0.12 1.17 6.00 -2.41 -0.01 1.15 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.21 6.21 -51.93 -0.32 -0.11 16 28 H 0.06 0.35 5.48 -51.93 -0.28 0.06 16 29 H 0.10 0.35 6.05 -51.93 -0.31 0.04 16 30 H 0.10 0.40 7.51 -51.93 -0.39 0.01 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.10 0.80 7.30 -51.93 -0.38 0.42 16 43 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -34.76 356.73 -5.66 -40.41 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -6.26 Total: -5.57 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -0.14 Total: -7.04 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.21 Total: -34.49 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.28 Total: -12.44 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.11 Total: -3.95 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.76 -5.66 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881689021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.442 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds