Wall clock time and date at job start Tue Mar 31 2020 14:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99826 * 2 1 4 4 C 1.53000 * 110.91645 * 297.55064 * 3 2 1 5 5 F 1.39897 * 109.47026 * 182.44834 * 4 3 2 6 6 F 1.39899 * 109.46808 * 302.44928 * 4 3 2 7 7 F 1.39902 * 109.47206 * 62.44401 * 4 3 2 8 8 C 1.55158 * 111.00085 * 61.45299 * 3 2 1 9 9 C 1.54319 * 102.94144 * 82.57458 * 8 3 2 10 10 N 1.47021 * 107.27574 * 22.18705 * 9 8 3 11 11 C 1.34777 * 125.64819 * 181.02426 * 10 9 8 12 12 O 1.21279 * 119.99633 * 180.02562 * 11 10 9 13 13 C 1.50701 * 120.00115 * 0.02562 * 11 10 9 14 14 C 1.52997 * 109.47212 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 C 1.47419 * 108.69945 * 1.28925 * 10 9 8 26 26 H 1.09003 * 109.47150 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47413 * 300.00281 * 1 2 3 28 28 H 1.09000 * 109.46928 * 60.00416 * 1 2 3 29 29 H 1.08999 * 110.71999 * 324.20558 * 8 3 2 30 30 H 1.09003 * 110.86703 * 201.00405 * 8 3 2 31 31 H 1.09007 * 109.87793 * 262.77055 * 9 8 3 32 32 H 1.09001 * 109.88171 * 141.60987 * 9 8 3 33 33 H 1.09002 * 109.47060 * 60.00000 * 13 11 10 34 34 H 1.09001 * 109.46927 * 300.00196 * 13 11 10 35 35 H 1.09002 * 109.47153 * 60.00002 * 14 13 11 36 36 H 1.09001 * 109.46832 * 300.00193 * 14 13 11 37 37 H 1.09002 * 109.47103 * 59.99753 * 15 14 13 38 38 H 1.08998 * 109.46862 * 300.00565 * 15 14 13 39 39 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 40 40 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 41 41 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 42 42 H 1.09004 * 110.36787 * 94.48377 * 25 10 9 43 43 H 1.09001 * 110.36884 * 216.80608 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6285 2.0734 -1.2671 5 9 2.2572 3.3231 -1.2623 6 9 2.0381 1.3496 -2.3921 7 9 0.2411 2.2493 -1.3056 8 6 1.6040 2.0950 1.2724 9 6 2.6061 1.5858 2.3297 10 7 3.7697 1.0518 1.6069 11 6 4.8581 0.4941 2.1734 12 8 5.7626 0.0858 1.4762 13 6 4.9512 0.3779 3.6730 14 6 6.2766 -0.2858 4.0519 15 6 6.3709 -0.4044 5.5743 16 6 7.6960 -1.0687 5.9531 17 6 7.7891 -1.1849 7.4527 18 1 6.9835 -0.8217 8.0735 19 6 8.9024 -1.7559 8.0321 20 7 8.9833 -1.8578 9.3408 21 14 10.2954 -2.3848 6.9583 22 1 11.2782 -1.2944 6.7336 23 1 10.9662 -3.5240 7.6346 24 1 9.7495 -2.8359 5.6530 25 6 3.5515 1.2331 0.1603 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.5812 1.8566 1.5640 30 1 1.7192 3.1678 1.1170 31 1 2.1468 0.7978 2.9266 32 1 2.9156 2.4089 2.9739 33 1 4.1229 -0.2267 4.0427 34 1 4.9026 1.3717 4.1181 35 1 7.1046 0.3191 3.6822 36 1 6.3256 -1.2796 3.6066 37 1 5.5429 -1.0096 5.9435 38 1 6.3216 0.5891 6.0198 39 1 8.5243 -0.4640 5.5837 40 1 7.7447 -2.0623 5.5075 41 1 9.7667 -2.2592 9.7485 42 1 4.0145 2.1594 -0.1800 43 1 3.9504 0.3829 -0.3931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881689021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:31 Heat of formation + Delta-G solvation = -257.875652 kcal Electronic energy + Delta-G solvation = -28067.880564 eV Core-core repulsion = 23504.321152 eV Total energy + Delta-G solvation = -4563.559412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.37187 -48.90089 -48.79724 -41.49029 -39.86781 -37.35928 -36.63102 -34.60697 -32.96400 -31.71907 -30.80968 -28.20879 -27.69901 -26.60230 -24.61001 -23.39330 -22.21889 -21.70160 -20.50384 -19.92257 -19.43307 -19.18343 -18.84561 -18.22729 -17.17150 -16.98812 -16.55000 -16.37701 -16.19680 -16.07028 -15.87817 -15.62206 -15.50080 -15.19279 -15.02883 -14.94704 -14.81238 -14.74477 -14.20447 -14.15867 -13.84893 -13.65431 -13.61190 -13.47112 -13.07429 -12.84828 -12.80892 -12.41856 -12.31561 -12.07636 -12.03547 -11.74720 -11.50886 -11.32969 -11.25217 -11.01057 -10.84789 -10.74834 -9.81867 -8.28685 -6.31344 1.25256 1.35481 1.37138 1.49884 1.56997 1.87602 2.03768 2.36809 2.45380 2.54742 2.89485 3.06922 3.23179 3.35618 3.69013 3.88605 4.01917 4.05830 4.14056 4.22027 4.26747 4.38054 4.41102 4.58836 4.61645 4.64719 4.69804 4.78298 4.83741 4.86797 4.90067 5.11399 5.15432 5.23231 5.29503 5.61837 5.67470 5.69974 5.70318 6.30588 6.33188 6.76698 7.06510 7.33487 8.87847 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.031834 B = 0.002153 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.358703 B =13000.400220 C =13249.724216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.359 6.359 3 C 0.060 3.940 4 C 0.443 3.557 5 F -0.173 7.173 6 F -0.183 7.183 7 F -0.170 7.170 8 C -0.148 4.148 9 C 0.099 3.901 10 N -0.617 5.617 11 C 0.530 3.470 12 O -0.583 6.583 13 C -0.122 4.122 14 C -0.099 4.099 15 C -0.092 4.092 16 C -0.018 4.018 17 C -0.529 4.529 18 H 0.039 0.961 19 C 0.004 3.996 20 N -0.950 5.950 21 Si 0.946 3.054 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.253 1.253 25 C 0.118 3.882 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.013 0.987 40 H 0.012 0.988 41 H 0.266 0.734 42 H 0.104 0.896 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.191 11.799 -23.249 35.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.277 6.277 3 C 0.017 3.983 4 C 0.387 3.613 5 F -0.154 7.154 6 F -0.164 7.164 7 F -0.152 7.152 8 C -0.186 4.186 9 C -0.022 4.022 10 N -0.351 5.351 11 C 0.321 3.679 12 O -0.462 6.462 13 C -0.162 4.162 14 C -0.137 4.137 15 C -0.130 4.130 16 C -0.055 4.055 17 C -0.567 4.567 18 H 0.057 0.943 19 C -0.193 4.193 20 N -0.592 5.592 21 Si 0.770 3.230 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.177 1.177 25 C -0.006 4.006 26 H 0.125 0.875 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.455 11.330 -23.458 35.054 hybrid contribution 0.615 -0.245 -0.445 0.798 sum -22.840 11.084 -23.903 34.869 Atomic orbital electron populations 1.23612 0.78224 1.05485 1.03007 1.88175 1.22734 1.22636 1.94182 1.23739 0.96521 0.86315 0.91772 1.21104 0.75046 0.78467 0.86633 1.93210 1.82136 1.43390 1.96683 1.93216 1.90183 1.77669 1.55374 1.93141 1.29985 1.95205 1.96848 1.23447 1.02455 1.01700 0.90979 1.22323 0.84369 1.00499 0.94997 1.48402 1.19563 1.60638 1.06518 1.20967 0.79830 0.75397 0.91699 1.90706 1.39668 1.50109 1.65742 1.21660 1.00236 1.05057 0.89217 1.21304 0.96569 1.00387 0.95435 1.21321 0.97333 1.00430 0.93887 1.19585 0.95881 0.96014 0.94055 1.21544 1.03945 1.38753 0.92418 0.94313 1.25979 1.01302 0.95856 0.96148 1.70058 1.30834 1.46888 1.11372 0.85713 0.79121 0.78495 0.79671 1.19228 1.20810 1.17668 1.22139 0.90255 1.03980 0.84182 0.87483 0.90516 0.91809 0.85481 0.86469 0.88949 0.87609 0.86611 0.86134 0.92834 0.93202 0.92382 0.92166 0.96908 0.96917 0.92544 0.87841 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 10.10 113.37 1.15 1.07 16 2 O -0.36 -5.53 10.43 -148.98 -1.55 -7.09 16 3 C 0.06 0.78 0.52 -9.32 0.00 0.78 16 4 C 0.44 6.01 2.34 71.98 0.17 6.17 16 5 F -0.17 -2.31 15.74 44.97 0.71 -1.60 16 6 F -0.18 -3.23 17.17 44.97 0.77 -2.46 16 7 F -0.17 -1.99 14.05 44.97 0.63 -1.36 16 8 C -0.15 -0.96 5.74 31.78 0.18 -0.78 16 9 C 0.10 0.92 6.48 86.73 0.56 1.48 16 10 N -0.62 -11.45 3.32 -811.36 -2.70 -14.15 16 11 C 0.53 13.73 7.85 87.66 0.69 14.42 16 12 O -0.58 -20.82 16.24 -3.03 -0.05 -20.87 16 13 C -0.12 -2.75 4.89 29.85 0.15 -2.60 16 14 C -0.10 -3.17 4.50 30.59 0.14 -3.03 16 15 C -0.09 -3.47 5.15 30.59 0.16 -3.31 16 16 C -0.02 -0.87 4.04 29.85 0.12 -0.75 16 17 C -0.53 -30.97 9.66 25.60 0.25 -30.72 16 18 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 19 C 0.00 0.22 5.47 84.66 0.46 0.69 16 20 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 21 Si 0.95 46.00 27.47 68.60 1.88 47.89 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.25 -11.73 6.54 99.48 0.65 -11.08 16 25 C 0.12 2.12 6.00 86.93 0.52 2.64 16 26 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.32 6.21 -2.39 -0.01 0.31 16 28 H 0.06 0.56 5.48 -2.39 -0.01 0.55 16 29 H 0.13 0.28 6.05 -2.39 -0.01 0.27 16 30 H 0.12 0.45 7.51 -2.39 -0.02 0.43 16 31 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 36 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.01 0.60 7.57 -2.39 -0.02 0.59 16 40 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.10 1.66 7.30 -2.38 -0.02 1.64 16 43 H 0.08 1.79 8.03 -2.39 -0.02 1.77 16 Total: -1.00 -77.24 356.73 5.49 -71.74 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 0.96 Total: 1.94 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 4.54 Total: -13.93 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -2.40 Total: -74.26 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -1.60 Total: -27.95 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 2.11 Total: -5.42 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.88 Total: 47.89 kcal Total: -77.24 5.49 -71.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881689021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.132 kcal (2) G-P(sol) polarization free energy of solvation -77.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds