Wall clock time and date at job start Tue Mar 31 2020 14:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34785 * 116.99962 * 2 1 4 4 O 1.21547 * 120.00528 * 0.26639 * 3 2 1 5 5 C 1.47116 * 119.99594 * 179.97438 * 3 2 1 6 6 C 1.46739 * 127.02362 * 0.02562 * 5 3 2 7 7 C 1.34436 * 106.37049 * 179.97438 * 6 5 3 8 8 C 1.50701 * 125.45744 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.47251 * 94.96731 * 8 7 6 10 10 C 1.34784 * 119.99646 * 179.97438 * 9 8 7 11 11 O 1.21578 * 120.00215 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99472 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99610 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46842 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46923 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00037 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00124 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47286 * 90.00135 * 19 17 15 21 21 H 1.48503 * 109.47146 * 210.00305 * 19 17 15 22 22 H 1.48493 * 109.47312 * 330.00108 * 19 17 15 23 23 N 1.36429 * 109.08589 * 359.97438 * 7 6 5 24 24 C 1.46503 * 124.80786 * 180.02562 * 23 7 6 25 25 C 1.34624 * 110.38242 * 359.75242 * 23 7 6 26 26 C 1.50694 * 125.89781 * 180.27281 * 25 23 7 27 27 H 1.09003 * 109.47655 * 300.01024 * 1 2 3 28 28 H 1.09011 * 109.46630 * 60.00333 * 1 2 3 29 29 H 1.08996 * 109.47472 * 180.02562 * 1 2 3 30 30 H 1.08000 * 126.81676 * 359.97438 * 6 5 3 31 31 H 1.08995 * 109.47270 * 214.97246 * 8 7 6 32 32 H 1.09002 * 109.46837 * 334.97118 * 8 7 6 33 33 H 0.96991 * 120.00273 * 0.02562 * 9 8 7 34 34 H 0.97000 * 119.99826 * 0.02562 * 12 10 9 35 35 H 1.08999 * 109.47234 * 299.99718 * 13 12 10 36 36 H 1.08996 * 109.47377 * 60.00034 * 13 12 10 37 37 H 1.08991 * 109.47129 * 299.99589 * 14 13 12 38 38 H 1.08998 * 109.47274 * 60.00357 * 14 13 12 39 39 H 0.96997 * 120.00190 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46722 * 90.00128 * 24 23 7 41 41 H 1.08996 * 109.47496 * 210.00493 * 24 23 7 42 42 H 1.08999 * 109.47105 * 330.00682 * 24 23 7 43 43 H 1.08998 * 109.47166 * 270.18226 * 26 25 23 44 44 H 1.09000 * 109.47516 * 30.17915 * 26 25 23 45 45 H 1.09000 * 109.47466 * 150.18256 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2204 0.0049 5 6 3.5330 1.2778 0.0006 6 6 4.4766 0.1541 0.0007 7 6 5.7081 0.6934 0.0007 8 6 7.0013 -0.0804 0.0002 9 7 7.4816 -0.2280 -1.3759 10 6 8.6299 -0.8896 -1.6216 11 8 9.2669 -1.3642 -0.7012 12 7 9.0720 -1.0249 -2.8876 13 6 10.3198 -1.7444 -3.1547 14 6 10.5916 -1.7526 -4.6604 15 6 11.8756 -2.4922 -4.9350 16 1 12.4409 -2.9146 -4.1176 17 6 12.3279 -2.6306 -6.2301 18 7 11.6391 -2.1167 -7.2257 19 14 13.9191 -3.5480 -6.5706 20 1 13.6245 -4.9880 -6.7832 21 1 14.5619 -2.9894 -7.7872 22 1 14.8357 -3.3961 -5.4123 23 7 5.5995 2.0533 0.0000 24 6 6.7321 2.9827 -0.0007 25 6 4.3043 2.4203 -0.0059 26 6 3.7870 3.8357 -0.0142 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 4.2307 -0.8975 0.0007 31 1 7.7455 0.4554 0.5893 32 1 6.8350 -1.0662 0.4347 33 1 6.9736 0.1509 -2.1102 34 1 8.5639 -0.6459 -3.6219 35 1 11.1427 -1.2482 -2.6400 36 1 10.2321 -2.7697 -2.7954 37 1 9.7689 -2.2485 -5.1753 38 1 10.6795 -0.7272 -5.0193 39 1 11.9572 -2.2144 -8.1368 40 1 7.0126 3.2126 -1.0286 41 1 6.4486 3.9014 0.5128 42 1 7.5777 2.5253 0.5131 43 1 3.6620 4.1828 1.0114 44 1 4.4982 4.4795 -0.5315 45 1 2.8265 3.8685 -0.5284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883563841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:45 Heat of formation + Delta-G solvation = -79.080404 kcal Electronic energy + Delta-G solvation = -26264.231498 eV Core-core repulsion = 22282.574721 eV Total energy + Delta-G solvation = -3981.656777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.91825 -40.13241 -39.50619 -36.54468 -35.32500 -34.50532 -33.30807 -32.87013 -32.00454 -29.76066 -28.68916 -27.95259 -26.73412 -25.18414 -24.23352 -22.56168 -21.09560 -20.76071 -20.59179 -19.17635 -18.30600 -17.60111 -16.73316 -16.55526 -16.39756 -16.08785 -15.91902 -15.45618 -15.37424 -14.54073 -14.42118 -14.09220 -13.81129 -13.71338 -13.60662 -13.53463 -13.31001 -13.23940 -12.83003 -12.64256 -12.53084 -12.36472 -12.31933 -12.26845 -11.78074 -11.19845 -11.03929 -10.98113 -10.64032 -10.63404 -10.33186 -10.03151 -9.58693 -9.28136 -9.11354 -9.04014 -8.51146 -8.49782 -8.27664 -6.09850 -4.12541 1.16929 1.79931 2.20221 2.78705 2.97817 3.21687 3.29293 3.35553 3.40138 3.54024 4.19583 4.31048 4.36372 4.39404 4.66273 4.69026 4.72864 4.85655 4.87991 4.93750 5.01732 5.08432 5.18301 5.27102 5.27283 5.30550 5.46212 5.53234 5.59264 5.79883 6.22470 6.27124 6.37207 6.38369 6.47627 6.67600 6.75618 6.76449 6.97072 7.18946 7.55600 7.62299 7.68500 7.89245 8.24409 8.39160 8.90861 8.96065 9.52260 11.01784 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.001957 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.764174 B =14305.582726 C =14739.043198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.544 3.456 4 O -0.525 6.525 5 C -0.236 4.236 6 C -0.113 4.113 7 C -0.012 4.012 8 C 0.213 3.787 9 N -0.753 5.753 10 C 0.699 3.301 11 O -0.598 6.598 12 N -0.738 5.738 13 C 0.140 3.860 14 C 0.013 3.987 15 C -0.520 4.520 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 N -0.427 5.427 24 C 0.061 3.939 25 C 0.127 3.873 26 C -0.098 4.098 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.155 0.845 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.396 0.604 34 H 0.393 0.607 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.194 11.745 15.460 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.391 3.609 4 O -0.416 6.416 5 C -0.244 4.244 6 C -0.137 4.137 7 C -0.119 4.119 8 C 0.088 3.912 9 N -0.410 5.410 10 C 0.399 3.601 11 O -0.477 6.477 12 N -0.391 5.391 13 C 0.017 3.983 14 C -0.025 4.025 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 N -0.102 5.102 24 C -0.080 4.080 25 C 0.008 3.992 26 C -0.155 4.155 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.173 0.827 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.229 0.771 34 H 0.226 0.774 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.449 11.764 16.128 27.870 hybrid contribution 0.163 -0.094 -1.038 1.055 sum -19.286 11.670 15.090 27.126 Atomic orbital electron populations 1.23232 0.76375 1.03574 1.02387 1.86581 1.23101 1.32767 1.84576 1.20069 0.87733 0.81100 0.71978 1.90793 1.66815 1.35916 1.48100 1.19268 0.89022 0.93290 1.22822 1.21956 0.89683 0.98489 1.03569 1.20221 0.96601 0.81945 1.13089 1.19403 0.89113 0.99067 0.83625 1.45235 1.25515 1.61786 1.08488 1.16039 0.80634 0.79264 0.84140 1.90897 1.58589 1.54461 1.43703 1.45548 1.27791 1.60172 1.05576 1.21601 0.82098 0.94687 0.99882 1.19327 0.97489 0.97869 0.87795 1.21050 1.06951 1.35250 0.92674 0.92201 1.25003 0.97475 0.95665 0.96216 1.69957 1.38904 1.45165 0.99320 0.86504 0.83292 0.79897 0.77808 1.20550 1.21205 1.19726 1.43515 1.05667 1.06224 1.54788 1.22225 0.88100 0.93355 1.04323 1.20572 0.82433 0.96018 1.00208 1.20626 1.02816 0.88336 1.03693 0.92046 0.91989 0.88155 0.82696 0.91061 0.89190 0.77089 0.77366 0.92779 0.92706 0.95950 0.96014 0.92861 0.89978 0.89313 0.88868 0.90051 0.91218 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.35 -3.73 10.47 -40.72 -0.43 -4.16 16 3 C 0.54 6.35 7.95 34.33 0.27 6.63 16 4 O -0.53 -6.79 14.67 -19.30 -0.28 -7.08 16 5 C -0.24 -2.57 6.33 -103.01 -0.65 -3.22 16 6 C -0.11 -1.14 10.89 -37.49 -0.41 -1.55 16 7 C -0.01 -0.11 6.21 -81.89 -0.51 -0.62 16 8 C 0.21 2.22 5.77 -5.19 -0.03 2.19 16 9 N -0.75 -9.00 5.55 -66.41 -0.37 -9.37 16 10 C 0.70 11.68 8.57 -86.90 -0.74 10.94 16 11 O -0.60 -12.34 16.34 5.30 0.09 -12.25 16 12 N -0.74 -12.69 5.56 -65.23 -0.36 -13.05 16 13 C 0.14 2.96 5.61 -4.04 -0.02 2.94 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 19 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 N -0.43 -3.54 3.08 -115.00 -0.35 -3.89 16 24 C 0.06 0.33 10.39 59.85 0.62 0.96 16 25 C 0.13 1.17 6.93 -81.51 -0.56 0.61 16 26 C -0.10 -0.68 9.27 36.00 0.33 -0.35 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.07 0.74 7.09 -51.93 -0.37 0.37 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.40 4.01 8.48 -40.82 -0.35 3.66 16 34 H 0.39 5.85 8.49 -40.82 -0.35 5.50 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.31 7.51 -51.93 -0.39 -0.08 16 42 H 0.09 0.51 6.98 -51.93 -0.36 0.14 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.35 7.60 -51.93 -0.39 -0.05 16 45 H 0.10 0.85 6.52 -51.93 -0.34 0.51 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -34.78 386.15 -8.10 -42.88 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.74 Total: 3.22 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -1.19 Total: 6.89 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.35 Total: -51.60 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.62 Total: -23.49 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.78 -8.10 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883563841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.200 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds