Wall clock time and date at job start Tue Mar 31 2020 14:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34785 * 116.99962 * 2 1 4 4 O 1.21547 * 120.00528 * 0.26639 * 3 2 1 5 5 C 1.47116 * 119.99594 * 179.97438 * 3 2 1 6 6 C 1.46739 * 127.02362 * 0.02562 * 5 3 2 7 7 C 1.34436 * 106.37049 * 179.97438 * 6 5 3 8 8 C 1.50701 * 125.45744 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.47251 * 94.96731 * 8 7 6 10 10 C 1.34784 * 119.99646 * 179.97438 * 9 8 7 11 11 O 1.21578 * 120.00215 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99472 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99610 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46842 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46923 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00037 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00124 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47286 * 90.00135 * 19 17 15 21 21 H 1.48503 * 109.47146 * 210.00305 * 19 17 15 22 22 H 1.48493 * 109.47312 * 330.00108 * 19 17 15 23 23 N 1.36429 * 109.08589 * 359.97438 * 7 6 5 24 24 C 1.46503 * 124.80786 * 180.02562 * 23 7 6 25 25 C 1.34624 * 110.38242 * 359.75242 * 23 7 6 26 26 C 1.50694 * 125.89781 * 180.27281 * 25 23 7 27 27 H 1.09003 * 109.47655 * 300.01024 * 1 2 3 28 28 H 1.09011 * 109.46630 * 60.00333 * 1 2 3 29 29 H 1.08996 * 109.47472 * 180.02562 * 1 2 3 30 30 H 1.08000 * 126.81676 * 359.97438 * 6 5 3 31 31 H 1.08995 * 109.47270 * 214.97246 * 8 7 6 32 32 H 1.09002 * 109.46837 * 334.97118 * 8 7 6 33 33 H 0.96991 * 120.00273 * 0.02562 * 9 8 7 34 34 H 0.97000 * 119.99826 * 0.02562 * 12 10 9 35 35 H 1.08999 * 109.47234 * 299.99718 * 13 12 10 36 36 H 1.08996 * 109.47377 * 60.00034 * 13 12 10 37 37 H 1.08991 * 109.47129 * 299.99589 * 14 13 12 38 38 H 1.08998 * 109.47274 * 60.00357 * 14 13 12 39 39 H 0.96997 * 120.00190 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46722 * 90.00128 * 24 23 7 41 41 H 1.08996 * 109.47496 * 210.00493 * 24 23 7 42 42 H 1.08999 * 109.47105 * 330.00682 * 24 23 7 43 43 H 1.08998 * 109.47166 * 270.18226 * 26 25 23 44 44 H 1.09000 * 109.47516 * 30.17915 * 26 25 23 45 45 H 1.09000 * 109.47466 * 150.18256 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2204 0.0049 5 6 3.5330 1.2778 0.0006 6 6 4.4766 0.1541 0.0007 7 6 5.7081 0.6934 0.0007 8 6 7.0013 -0.0804 0.0002 9 7 7.4816 -0.2280 -1.3759 10 6 8.6299 -0.8896 -1.6216 11 8 9.2669 -1.3642 -0.7012 12 7 9.0720 -1.0249 -2.8876 13 6 10.3198 -1.7444 -3.1547 14 6 10.5916 -1.7526 -4.6604 15 6 11.8756 -2.4922 -4.9350 16 1 12.4409 -2.9146 -4.1176 17 6 12.3279 -2.6306 -6.2301 18 7 11.6391 -2.1167 -7.2257 19 14 13.9191 -3.5480 -6.5706 20 1 13.6245 -4.9880 -6.7832 21 1 14.5619 -2.9894 -7.7872 22 1 14.8357 -3.3961 -5.4123 23 7 5.5995 2.0533 0.0000 24 6 6.7321 2.9827 -0.0007 25 6 4.3043 2.4203 -0.0059 26 6 3.7870 3.8357 -0.0142 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 4.2307 -0.8975 0.0007 31 1 7.7455 0.4554 0.5893 32 1 6.8350 -1.0662 0.4347 33 1 6.9736 0.1509 -2.1102 34 1 8.5639 -0.6459 -3.6219 35 1 11.1427 -1.2482 -2.6400 36 1 10.2321 -2.7697 -2.7954 37 1 9.7689 -2.2485 -5.1753 38 1 10.6795 -0.7272 -5.0193 39 1 11.9572 -2.2144 -8.1368 40 1 7.0126 3.2126 -1.0286 41 1 6.4486 3.9014 0.5128 42 1 7.5777 2.5253 0.5131 43 1 3.6620 4.1828 1.0114 44 1 4.4982 4.4795 -0.5315 45 1 2.8265 3.8685 -0.5284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883563841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:44 Heat of formation + Delta-G solvation = -102.392486 kcal Electronic energy + Delta-G solvation = -26265.242386 eV Core-core repulsion = 22282.574721 eV Total energy + Delta-G solvation = -3982.667665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.64002 -41.02053 -40.77897 -37.37021 -36.78244 -35.85509 -34.79531 -33.94856 -32.87569 -31.42978 -29.39787 -28.87078 -27.30317 -26.68446 -25.46038 -23.35112 -22.86978 -21.96615 -21.50768 -19.99972 -19.43831 -18.50144 -18.40245 -17.66085 -17.32980 -17.04299 -16.70570 -16.58170 -16.48204 -16.35518 -15.39175 -15.29662 -15.17812 -14.82267 -14.40661 -14.31305 -14.25697 -14.18761 -13.87176 -13.58796 -13.49047 -13.20871 -13.17881 -12.94701 -12.91732 -12.88299 -12.51199 -12.49168 -12.20883 -11.72351 -11.67262 -11.50818 -11.47612 -11.23029 -10.59247 -10.36123 -9.75364 -9.72522 -9.26730 -8.22657 -6.32654 0.40276 0.96827 1.43365 1.43664 1.55002 1.55382 1.93328 2.11309 2.18327 2.24061 2.43192 3.12306 3.42525 3.45877 3.66728 3.87617 3.98074 4.21048 4.28856 4.35154 4.36846 4.37372 4.48472 4.55679 4.58380 4.62125 4.68721 4.71670 4.74710 4.79189 4.89834 5.00761 5.11309 5.32939 5.40260 5.45638 5.53479 5.61931 5.62619 5.80588 5.95158 6.01874 6.11605 6.18978 6.80961 6.86532 7.11034 7.36656 7.59646 8.89169 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.001957 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.764174 B =14305.582726 C =14739.043198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.540 3.460 4 O -0.546 6.546 5 C -0.266 4.266 6 C -0.118 4.118 7 C -0.012 4.012 8 C 0.217 3.783 9 N -0.731 5.731 10 C 0.702 3.298 11 O -0.636 6.636 12 N -0.733 5.733 13 C 0.161 3.839 14 C 0.023 3.977 15 C -0.545 4.545 16 H 0.060 0.940 17 C 0.006 3.994 18 N -0.927 5.927 19 Si 0.965 3.035 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.266 1.266 23 N -0.422 5.422 24 C 0.053 3.947 25 C 0.134 3.866 26 C -0.095 4.095 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.128 0.872 30 H 0.158 0.842 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.408 0.592 34 H 0.406 0.594 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.265 0.735 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.956 12.373 15.877 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.388 3.612 4 O -0.439 6.439 5 C -0.274 4.274 6 C -0.142 4.142 7 C -0.119 4.119 8 C 0.093 3.907 9 N -0.388 5.388 10 C 0.402 3.598 11 O -0.518 6.518 12 N -0.388 5.388 13 C 0.037 3.963 14 C -0.014 4.014 15 C -0.583 4.583 16 H 0.078 0.922 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.789 3.211 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.190 1.190 23 N -0.096 5.096 24 C -0.087 4.087 25 C 0.013 3.987 26 C -0.152 4.152 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.176 0.824 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.243 0.757 34 H 0.241 0.759 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.131 0.869 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.255 12.415 16.544 28.260 hybrid contribution 0.000 -0.251 -1.138 1.166 sum -19.255 12.164 15.406 27.497 Atomic orbital electron populations 1.23504 0.74742 1.05462 1.02475 1.86568 1.24842 1.32360 1.84311 1.20283 0.88176 0.81124 0.71570 1.90769 1.67316 1.36462 1.49370 1.19465 0.88950 0.94308 1.24701 1.22069 0.89928 0.98731 1.03519 1.19969 0.95690 0.82604 1.13629 1.19410 0.89612 0.99245 0.82443 1.45050 1.23811 1.60151 1.09784 1.16065 0.81365 0.79228 0.83157 1.90875 1.60074 1.56162 1.44688 1.45232 1.26891 1.60123 1.06551 1.21068 0.83584 0.94483 0.97206 1.19131 0.96056 0.96420 0.89826 1.21475 1.08142 1.35662 0.93034 0.92196 1.25875 1.00924 0.96468 0.96027 1.70059 1.40594 1.46259 0.99755 0.85447 0.79125 0.78654 0.77832 1.19852 1.20618 1.18985 1.43674 1.06107 1.06105 1.53713 1.22502 0.87195 0.93720 1.05283 1.20915 0.82567 0.96623 0.98628 1.20665 1.02570 0.87432 1.04495 0.91867 0.92026 0.85417 0.82445 0.90514 0.89540 0.75655 0.75886 0.93619 0.93794 0.97438 0.97278 0.92601 0.89152 0.86935 0.88710 0.88969 0.88714 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.63 16 2 O -0.36 -7.65 10.47 -56.97 -0.60 -8.25 16 3 C 0.54 12.65 7.95 70.15 0.56 13.20 16 4 O -0.55 -14.23 14.67 19.68 0.29 -13.94 16 5 C -0.27 -5.66 6.33 -18.82 -0.12 -5.78 16 6 C -0.12 -2.32 10.89 23.62 0.26 -2.06 16 7 C -0.01 -0.20 6.21 40.97 0.25 0.05 16 8 C 0.22 4.23 5.77 85.63 0.49 4.72 16 9 N -0.73 -16.36 5.55 -482.29 -2.68 -19.04 16 10 C 0.70 22.76 8.57 179.05 1.53 24.29 16 11 O -0.64 -25.91 16.34 -3.96 -0.06 -25.98 16 12 N -0.73 -24.75 5.56 -478.54 -2.66 -27.41 16 13 C 0.16 6.82 5.61 86.38 0.48 7.31 16 14 C 0.02 1.15 5.09 29.85 0.15 1.31 16 15 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 16 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 17 C 0.01 0.32 5.46 84.65 0.46 0.78 16 18 N -0.93 -54.01 13.29 21.45 0.28 -53.73 16 19 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 N -0.42 -6.14 3.08 -517.75 -1.60 -7.74 16 24 C 0.05 0.43 10.39 127.77 1.33 1.76 16 25 C 0.13 2.27 6.93 42.04 0.29 2.56 16 26 C -0.09 -1.15 9.27 71.23 0.66 -0.49 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.84 8.14 -2.38 -0.02 0.83 16 29 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.08 1.47 7.09 -2.39 -0.02 1.45 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.41 7.46 8.48 -92.71 -0.79 6.67 16 34 H 0.41 11.67 8.49 -92.71 -0.79 10.89 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.11 0.41 7.51 -2.39 -0.02 0.39 16 42 H 0.09 0.79 6.98 -2.39 -0.02 0.77 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 0.66 7.60 -2.39 -0.02 0.64 16 45 H 0.08 1.37 6.52 -2.39 -0.02 1.36 16 Total: -1.00 -74.53 386.15 2.24 -72.28 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.55 Total: 19.06 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 7.79 Total: 19.38 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -6.65 Total: -107.91 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -0.37 Total: -48.16 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -74.53 2.24 -72.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883563841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.109 kcal (2) G-P(sol) polarization free energy of solvation -74.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds