Wall clock time and date at job start Tue Mar 31 2020 13:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47183 * 2 1 4 4 C 1.42895 * 114.00063 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47463 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.46711 * 64.99850 * 5 4 3 7 7 C 1.42900 * 113.99967 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47411 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.47058 * 64.99884 * 8 7 6 10 10 C 1.34776 * 120.00532 * 180.02562 * 9 8 7 11 11 O 1.21596 * 119.99483 * 0.02562 * 10 9 8 12 12 C 1.47529 * 120.00576 * 179.97438 * 10 9 8 13 13 C 1.39668 * 120.19410 * 0.02562 * 12 10 9 14 14 C 1.37835 * 119.91853 * 179.97438 * 13 12 10 15 15 C 1.38573 * 120.31903 * 0.02562 * 14 13 12 16 16 C 1.38022 * 120.40696 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.06839 * 359.95623 * 16 15 14 18 18 O 1.35527 * 120.16025 * 180.02562 * 17 16 15 19 19 C 1.34817 * 116.99627 * 354.39561 * 18 17 16 20 20 H 1.07998 * 120.00286 * 5.06815 * 19 18 17 21 21 C 1.38705 * 119.99676 * 185.06799 * 19 18 17 22 22 N 1.31514 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47501 * 60.00015 * 23 21 19 25 25 H 1.48510 * 109.46856 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47250 * 299.99489 * 23 21 19 27 27 H 1.09000 * 109.46972 * 299.99850 * 1 2 3 28 28 H 1.08993 * 109.47130 * 60.00038 * 1 2 3 29 29 H 1.09003 * 109.46959 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46972 * 240.00150 * 2 1 3 31 31 H 1.09001 * 109.47541 * 120.00413 * 2 1 3 32 32 H 1.09005 * 109.47264 * 60.00379 * 4 3 2 33 33 H 1.09001 * 109.47713 * 300.00077 * 4 3 2 34 34 H 1.08998 * 109.46766 * 305.00745 * 5 4 3 35 35 H 1.08997 * 109.47618 * 184.99955 * 5 4 3 36 36 H 1.09004 * 109.47111 * 59.99683 * 7 6 5 37 37 H 1.09003 * 109.46773 * 300.00633 * 7 6 5 38 38 H 1.08999 * 109.46796 * 305.00133 * 8 7 6 39 39 H 1.08995 * 109.47178 * 184.99660 * 8 7 6 40 40 H 0.97003 * 120.00039 * 0.02562 * 9 8 7 41 41 H 1.07997 * 120.04248 * 0.26955 * 13 12 10 42 42 H 1.07992 * 119.83718 * 179.97438 * 14 13 12 43 43 H 1.08000 * 119.79251 * 179.97438 * 15 14 13 44 44 H 1.07996 * 119.96390 * 179.97438 * 16 15 14 45 45 H 0.96997 * 120.00153 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 8 3.3976 3.5450 1.2223 7 6 3.7183 4.9338 1.3249 8 6 3.2165 5.4755 2.6649 9 7 3.9460 4.8274 3.7576 10 6 3.6698 5.1498 5.0368 11 8 2.8147 5.9782 5.2839 12 6 4.4041 4.4968 6.1372 13 6 5.3867 3.5443 5.8581 14 6 6.0696 2.9381 6.8906 15 6 5.7859 3.2685 8.2061 16 6 4.8167 4.2072 8.4972 17 6 4.1191 4.8282 7.4700 18 8 3.1674 5.7505 7.7537 19 6 2.8637 5.9364 9.0540 20 1 3.4275 5.4233 9.8190 21 6 1.8271 6.7868 9.4093 22 7 1.1409 7.4121 8.4777 23 14 1.4068 7.0450 11.2109 24 1 2.5868 7.6022 11.9197 25 1 0.2686 7.9925 11.3228 26 1 1.0301 5.7453 11.8225 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9767 0.8908 34 1 3.3498 3.4416 -0.8406 35 1 4.9082 3.0255 -0.0879 36 1 3.2403 5.4782 0.5105 37 1 4.7989 5.0626 1.2630 38 1 2.1514 5.2668 2.7652 39 1 3.3814 6.5521 2.7063 40 1 4.6280 4.1663 3.5605 41 1 5.6146 3.2865 4.8344 42 1 6.8289 2.2016 6.6732 43 1 6.3259 2.7880 9.0085 44 1 4.6011 4.4589 9.5250 45 1 0.4158 8.0065 8.7261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885763028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:23 Heat of formation + Delta-G solvation = -126.927504 kcal Electronic energy + Delta-G solvation = -26793.856295 eV Core-core repulsion = 22777.831961 eV Total energy + Delta-G solvation = -4016.024334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -39.54157 -38.76742 -38.06782 -37.36166 -36.27210 -34.15258 -32.29560 -32.05070 -30.87104 -29.62949 -28.87116 -28.12916 -25.33312 -23.45624 -23.00632 -22.78674 -22.16709 -21.17549 -19.84124 -17.99456 -17.55070 -17.32254 -17.08502 -16.12469 -15.97781 -15.93215 -15.20326 -14.87206 -14.57921 -14.46816 -14.12748 -14.08321 -13.76841 -13.67674 -13.34761 -13.31677 -12.86863 -12.57440 -12.41434 -12.31443 -11.99658 -11.68459 -11.65913 -11.64307 -11.30479 -11.26529 -11.09099 -11.04900 -10.84143 -10.74118 -10.43968 -9.84450 -9.78834 -9.51754 -8.83156 -8.76783 -8.44772 -8.20505 -7.25461 -6.39409 -3.99454 1.78183 2.37243 3.14652 3.17077 3.19296 3.40647 3.46720 3.81030 3.84538 3.97687 4.70214 4.70809 4.79918 4.90295 4.91407 5.02730 5.09834 5.11650 5.12671 5.17537 5.19328 5.23325 5.29720 5.43302 5.52478 5.53654 5.60914 5.69379 5.77354 5.88044 5.92152 6.04241 6.17487 6.21066 6.61918 6.74897 6.93195 6.96677 7.02120 7.10651 7.11541 7.29073 7.33957 7.74838 7.97353 8.23483 8.99987 9.19726 9.73196 10.74463 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.002694 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.511458 B =10390.124990 C =10917.275399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.064 3.936 5 C 0.063 3.937 6 O -0.374 6.374 7 C 0.052 3.948 8 C 0.128 3.872 9 N -0.738 5.738 10 C 0.553 3.447 11 O -0.503 6.503 12 C -0.225 4.225 13 C -0.037 4.037 14 C -0.232 4.232 15 C -0.052 4.052 16 C -0.239 4.239 17 C 0.189 3.811 18 O -0.124 6.124 19 C -0.404 4.404 20 H 0.093 0.907 21 C 0.045 3.955 22 N -0.833 5.833 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.394 0.606 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.131 0.869 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.838 -11.983 -16.330 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.013 4.013 5 C -0.014 4.014 6 O -0.293 6.293 7 C -0.025 4.025 8 C 0.004 3.996 9 N -0.395 5.395 10 C 0.343 3.657 11 O -0.378 6.378 12 C -0.230 4.230 13 C -0.056 4.056 14 C -0.251 4.251 15 C -0.070 4.070 16 C -0.258 4.258 17 C 0.129 3.871 18 O -0.022 6.022 19 C -0.480 4.480 20 H 0.110 0.890 21 C -0.163 4.163 22 N -0.464 5.464 23 Si 0.765 3.235 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.228 0.772 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.572 -10.921 -16.160 20.284 hybrid contribution 0.593 -0.441 0.564 0.930 sum 6.165 -11.362 -15.596 20.257 Atomic orbital electron populations 1.21739 0.93682 1.02146 1.03372 1.22456 0.95810 0.83853 0.99836 1.87984 1.20409 1.26203 1.95354 1.22503 0.82366 0.95641 1.00751 1.22499 0.98144 0.92680 0.88040 1.88055 1.80945 1.22815 1.37478 1.22806 0.99349 0.82543 0.97813 1.21201 0.97752 0.96897 0.83790 1.45785 1.42535 1.45713 1.05442 1.18225 0.83106 0.82472 0.81926 1.90946 1.31460 1.32079 1.83293 1.18866 1.06091 1.06994 0.91007 1.20764 0.93310 0.93557 0.98005 1.20450 1.05549 1.06292 0.92790 1.20883 0.95116 0.94988 0.96032 1.21146 1.01765 1.03154 0.99728 1.19284 0.88665 0.87386 0.91720 1.84182 1.45019 1.45156 1.27827 1.21447 1.17327 1.28863 0.80386 0.88960 1.25379 0.95104 0.95699 1.00132 1.70119 1.18513 1.24878 1.32931 0.85804 0.78563 0.78734 0.80432 1.19401 1.20181 1.19392 0.91498 0.91977 0.91195 0.93733 0.93288 0.92085 0.92291 0.92541 0.91858 0.91872 0.92789 0.90873 0.90307 0.77191 0.87085 0.87356 0.87247 0.85114 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.38 -4.46 10.31 -40.08 -0.41 -4.87 16 4 C 0.06 0.58 6.32 37.16 0.23 0.81 16 5 C 0.06 0.57 6.32 37.16 0.23 0.81 16 6 O -0.37 -4.69 10.25 -40.08 -0.41 -5.10 16 7 C 0.05 0.57 6.07 37.16 0.23 0.79 16 8 C 0.13 1.93 6.06 -4.04 -0.02 1.91 16 9 N -0.74 -12.74 5.45 -61.35 -0.33 -13.07 16 10 C 0.55 12.72 7.76 -12.47 -0.10 12.62 16 11 O -0.50 -14.26 15.17 -16.57 -0.25 -14.51 16 12 C -0.22 -5.07 5.89 -104.81 -0.62 -5.68 16 13 C -0.04 -0.67 9.54 -39.20 -0.37 -1.04 16 14 C -0.23 -3.92 10.03 -39.61 -0.40 -4.31 16 15 C -0.05 -0.93 10.03 -39.54 -0.40 -1.33 16 16 C -0.24 -5.26 9.16 -39.44 -0.36 -5.62 16 17 C 0.19 4.83 6.66 -38.60 -0.26 4.57 16 18 O -0.12 -3.74 7.84 -21.08 -0.17 -3.90 16 19 C -0.40 -11.67 9.49 30.90 0.29 -11.38 16 20 H 0.09 2.41 5.21 -52.49 -0.27 2.13 16 21 C 0.04 1.27 5.49 -17.51 -0.10 1.17 16 22 N -0.83 -25.57 13.67 55.48 0.76 -24.82 16 23 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.39 5.66 6.50 -40.82 -0.27 5.39 16 41 H 0.11 1.56 6.40 -52.49 -0.34 1.23 16 42 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -37.03 383.33 -7.71 -44.75 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.65 Total: 6.72 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -1.00 Total: -6.81 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.42 Total: -37.89 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -1.24 Total: -28.38 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.03 -7.71 -44.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885763028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.181 kcal (2) G-P(sol) polarization free energy of solvation -37.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds