Wall clock time and date at job start Tue Mar 31 2020 14:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00471 * 2 1 4 4 O 1.20830 * 120.00224 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00140 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46988 * 299.99873 * 5 3 2 7 7 N 1.46500 * 109.47199 * 180.02562 * 5 3 2 8 8 C 1.34770 * 120.00063 * 154.99808 * 7 5 3 9 9 O 1.21603 * 120.00516 * 359.97438 * 8 7 5 10 10 C 1.47431 * 119.99929 * 179.97438 * 8 7 5 11 11 C 1.41293 * 126.41437 * 0.04241 * 10 8 7 12 12 N 1.30448 * 108.02361 * 179.70632 * 11 10 8 13 13 N 1.39944 * 108.89724 * 0.40720 * 12 11 10 14 14 C 1.46491 * 125.75406 * 179.85047 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.68786 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.34263 * 108.48668 * 359.58371 * 13 12 11 24 24 C 1.50701 * 126.28871 * 180.26134 * 23 13 12 25 25 C 1.52993 * 109.47307 * 60.00003 * 5 3 2 26 26 C 1.52998 * 109.47006 * 64.99722 * 25 5 3 27 27 C 1.52994 * 109.47164 * 185.00235 * 25 5 3 28 28 H 1.09004 * 109.46530 * 300.00260 * 1 2 3 29 29 H 1.09002 * 109.46726 * 59.99654 * 1 2 3 30 30 H 1.08995 * 109.47346 * 180.02562 * 1 2 3 31 31 H 0.97010 * 119.99367 * 334.99682 * 7 5 3 32 32 H 1.07998 * 125.98947 * 359.93069 * 11 10 8 33 33 H 1.09004 * 109.47166 * 149.69052 * 14 13 12 34 34 H 1.08994 * 109.47507 * 29.68759 * 14 13 12 35 35 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 36 36 H 1.09003 * 109.46762 * 89.99560 * 24 23 13 37 37 H 1.08991 * 109.47344 * 210.00318 * 24 23 13 38 38 H 1.08999 * 109.47223 * 330.00739 * 24 23 13 39 39 H 1.09005 * 109.46857 * 304.99944 * 25 5 3 40 40 H 1.08994 * 109.47139 * 60.00896 * 26 25 5 41 41 H 1.09006 * 109.46479 * 180.02562 * 26 25 5 42 42 H 1.08997 * 109.47683 * 299.99782 * 26 25 5 43 43 H 1.09000 * 109.47409 * 299.99819 * 27 25 5 44 44 H 1.09002 * 109.47303 * 59.99775 * 27 25 5 45 45 H 1.09004 * 109.47010 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9565 0.7804 0.8892 7 7 3.9819 2.6795 0.0002 8 6 5.1876 3.0254 0.4932 9 8 5.9305 2.1715 0.9378 10 6 5.6059 4.4391 0.4934 11 6 4.8552 5.5360 0.0141 12 7 5.5617 6.6178 0.1935 13 7 6.7840 6.2690 0.7789 14 6 7.8580 7.1988 1.1368 15 6 8.8019 7.3484 -0.0284 16 1 8.6198 6.8055 -0.9441 17 6 9.8947 8.1832 0.0724 18 7 10.7154 8.3179 -0.9463 19 14 10.2093 9.1227 1.6560 20 1 11.0630 8.3055 2.5551 21 1 10.8993 10.4004 1.3447 22 1 8.9159 9.4093 2.3269 23 6 6.8040 4.9391 0.9626 24 6 7.9276 4.1394 1.5699 25 6 4.1130 0.5814 -1.2501 26 6 3.6669 1.3495 -2.4958 27 6 5.6414 0.5514 -1.1894 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.3891 3.3607 -0.3543 32 1 3.8679 5.4877 -0.4210 33 1 8.4023 6.8111 1.9980 34 1 7.4301 8.1701 1.3847 35 1 11.4843 8.9049 -0.8753 36 1 7.7822 4.0691 2.6479 37 1 7.9359 3.1386 1.1383 38 1 8.8776 4.6322 1.3629 39 1 3.7311 -0.4386 -1.2960 40 1 4.0488 2.3693 -2.4499 41 1 4.0560 0.8552 -3.3861 42 1 2.5780 1.3708 -2.5392 43 1 6.0233 1.5713 -1.1434 44 1 5.9592 0.0041 -0.3019 45 1 6.0308 0.0570 -2.0794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886329162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:48 Heat of formation + Delta-G solvation = -55.133900 kcal Electronic energy + Delta-G solvation = -27969.800854 eV Core-core repulsion = 23989.182475 eV Total energy + Delta-G solvation = -3980.618379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.25483 -40.75949 -39.17098 -36.92598 -36.14967 -33.98001 -33.06986 -32.11497 -31.27957 -29.29865 -28.01071 -27.22847 -27.06736 -26.30275 -23.14995 -22.25212 -21.87376 -20.44326 -19.65936 -19.13603 -17.93190 -17.45556 -17.22874 -16.93793 -16.57574 -15.65515 -15.50244 -15.03695 -14.75903 -14.28524 -14.22631 -13.91400 -13.83732 -13.47040 -13.38095 -13.10051 -12.72264 -12.66861 -12.56757 -12.27239 -12.23004 -12.12254 -12.00992 -11.60233 -11.59659 -11.25023 -11.21480 -11.14616 -10.89534 -10.85593 -10.62360 -10.40715 -10.23947 -9.80550 -9.50553 -9.09335 -8.86007 -8.65845 -7.99753 -6.33867 -4.38729 1.82379 2.04323 2.20182 2.71453 3.04824 3.11360 3.18015 3.21684 3.46743 3.81398 4.15008 4.29827 4.54129 4.73932 4.74974 4.83191 4.90147 4.96526 5.05578 5.15600 5.16094 5.30153 5.40570 5.52601 5.63102 5.67226 5.70804 5.87198 5.91182 5.95969 5.98045 6.00724 6.14311 6.24951 6.35571 6.44362 6.46321 6.53742 6.59058 7.00776 7.17480 7.34385 7.54697 7.62594 8.18947 8.26664 8.48119 8.69560 9.20033 10.78292 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025202 B = 0.002808 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.760705 B = 9968.104484 C =10272.327509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.462 3.538 4 O -0.501 6.501 5 C 0.164 3.836 6 H 0.127 0.873 7 N -0.719 5.719 8 C 0.612 3.388 9 O -0.546 6.546 10 C -0.329 4.329 11 C 0.063 3.937 12 N -0.292 5.292 13 N -0.313 5.313 14 C 0.224 3.776 15 C -0.546 4.546 16 H 0.082 0.918 17 C 0.082 3.918 18 N -0.882 5.882 19 Si 0.872 3.128 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C 0.171 3.829 24 C -0.100 4.100 25 C -0.100 4.100 26 C -0.152 4.152 27 C -0.140 4.140 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.407 0.593 32 H 0.178 0.822 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.270 0.730 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.409 -17.258 2.144 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.304 3.696 4 O -0.387 6.387 5 C 0.057 3.943 6 H 0.144 0.856 7 N -0.374 5.374 8 C 0.403 3.597 9 O -0.425 6.425 10 C -0.344 4.344 11 C -0.125 4.125 12 N -0.111 5.111 13 N -0.090 5.090 14 C 0.106 3.894 15 C -0.584 4.584 16 H 0.100 0.900 17 C -0.123 4.123 18 N -0.519 5.519 19 Si 0.698 3.302 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.188 1.188 23 C 0.034 3.966 24 C -0.158 4.158 25 C -0.119 4.119 26 C -0.209 4.209 27 C -0.197 4.197 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.244 0.756 32 H 0.195 0.805 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.788 -16.035 2.285 22.619 hybrid contribution -0.453 0.244 0.506 0.722 sum -16.240 -15.791 2.791 22.823 Atomic orbital electron populations 1.23313 0.75970 1.03871 1.02733 1.86494 1.23615 1.32858 1.83955 1.23818 0.91969 0.81702 0.72133 1.90680 1.66829 1.36255 1.44972 1.20399 0.85784 0.85556 1.02523 0.85584 1.45522 1.19374 1.06897 1.65639 1.17161 0.79821 0.87204 0.75532 1.90712 1.52667 1.51280 1.47807 1.19557 0.98645 0.93282 1.22949 1.23790 0.99464 0.89761 0.99440 1.77169 0.93022 1.23428 1.17487 1.48920 1.12983 1.05241 1.41827 1.20154 0.83091 0.88528 0.97657 1.21098 1.08088 1.29333 0.99882 0.89988 1.24793 0.95226 0.95672 0.96650 1.69862 1.14344 1.37282 1.30386 0.86909 0.79353 0.80353 0.83595 1.19482 1.20369 1.18778 1.21455 0.95421 0.85050 0.94636 1.20654 0.94692 1.00171 1.00295 1.21537 0.98163 0.99394 0.92835 1.21885 1.00342 1.01405 0.97256 1.21883 0.92652 1.03602 1.01604 0.91753 0.91734 0.87878 0.75582 0.80533 0.93399 0.92706 0.91960 0.90476 0.88262 0.89822 0.89396 0.91655 0.91898 0.93424 0.91432 0.91687 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.17 10.37 -39.24 -0.41 -3.58 16 3 C 0.46 4.92 6.30 36.01 0.23 5.15 16 4 O -0.50 -6.37 15.59 -18.75 -0.29 -6.67 16 5 C 0.16 1.76 2.47 -69.08 -0.17 1.59 16 6 H 0.13 1.37 7.58 -51.93 -0.39 0.98 16 7 N -0.72 -8.93 3.92 -56.01 -0.22 -9.15 16 8 C 0.61 9.40 6.38 -12.52 -0.08 9.32 16 9 O -0.55 -9.04 11.97 5.27 0.06 -8.97 16 10 C -0.33 -5.78 6.13 -105.06 -0.64 -6.42 16 11 C 0.06 1.09 11.50 -16.98 -0.20 0.89 16 12 N -0.29 -6.16 12.50 30.86 0.39 -5.78 16 13 N -0.31 -6.84 3.56 -57.78 -0.21 -7.04 16 14 C 0.22 5.18 4.85 -5.20 -0.03 5.15 16 15 C -0.55 -14.81 9.94 -34.44 -0.34 -15.15 16 16 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.88 -25.67 13.96 55.43 0.77 -24.90 16 19 Si 0.87 19.64 27.47 -169.99 -4.67 14.97 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 23 C 0.17 3.33 7.01 -81.60 -0.57 2.76 16 24 C -0.10 -1.69 9.34 36.01 0.34 -1.36 16 25 C -0.10 -0.96 2.71 -90.63 -0.25 -1.21 16 26 C -0.15 -1.44 8.79 37.16 0.33 -1.12 16 27 C -0.14 -1.58 7.79 37.15 0.29 -1.29 16 28 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.41 4.81 6.75 -40.82 -0.28 4.53 16 32 H 0.18 2.32 7.50 -52.49 -0.39 1.93 16 33 H 0.05 1.01 7.06 -51.93 -0.37 0.65 16 34 H 0.06 1.28 7.19 -51.93 -0.37 0.90 16 35 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.10 1.64 6.50 -51.93 -0.34 1.30 16 38 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 39 H 0.09 0.72 8.00 -51.93 -0.42 0.31 16 40 H 0.06 0.70 7.48 -51.93 -0.39 0.31 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.43 7.38 -51.93 -0.38 0.05 16 43 H 0.07 0.94 5.65 -51.93 -0.29 0.65 16 44 H 0.06 0.75 7.84 -51.93 -0.41 0.35 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -31.85 371.15 -5.66 -37.51 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.55 Total: 6.29 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.13 Total: 1.72 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.73 Total: -46.87 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.64 Total: -19.22 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.67 Total: 14.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.85 -5.66 -37.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886329162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.625 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds