Wall clock time and date at job start Tue Mar 31 2020 14:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00471 * 2 1 4 4 O 1.20830 * 120.00224 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00140 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46988 * 299.99873 * 5 3 2 7 7 N 1.46500 * 109.47199 * 180.02562 * 5 3 2 8 8 C 1.34770 * 120.00063 * 154.99808 * 7 5 3 9 9 O 1.21603 * 120.00516 * 359.97438 * 8 7 5 10 10 C 1.47431 * 119.99929 * 179.97438 * 8 7 5 11 11 C 1.41293 * 126.41437 * 0.04241 * 10 8 7 12 12 N 1.30448 * 108.02361 * 179.70632 * 11 10 8 13 13 N 1.39944 * 108.89724 * 0.40720 * 12 11 10 14 14 C 1.46491 * 125.75406 * 179.85047 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.68786 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.34263 * 108.48668 * 359.58371 * 13 12 11 24 24 C 1.50701 * 126.28871 * 180.26134 * 23 13 12 25 25 C 1.52993 * 109.47307 * 60.00003 * 5 3 2 26 26 C 1.52998 * 109.47006 * 64.99722 * 25 5 3 27 27 C 1.52994 * 109.47164 * 185.00235 * 25 5 3 28 28 H 1.09004 * 109.46530 * 300.00260 * 1 2 3 29 29 H 1.09002 * 109.46726 * 59.99654 * 1 2 3 30 30 H 1.08995 * 109.47346 * 180.02562 * 1 2 3 31 31 H 0.97010 * 119.99367 * 334.99682 * 7 5 3 32 32 H 1.07998 * 125.98947 * 359.93069 * 11 10 8 33 33 H 1.09004 * 109.47166 * 149.69052 * 14 13 12 34 34 H 1.08994 * 109.47507 * 29.68759 * 14 13 12 35 35 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 36 36 H 1.09003 * 109.46762 * 89.99560 * 24 23 13 37 37 H 1.08991 * 109.47344 * 210.00318 * 24 23 13 38 38 H 1.08999 * 109.47223 * 330.00739 * 24 23 13 39 39 H 1.09005 * 109.46857 * 304.99944 * 25 5 3 40 40 H 1.08994 * 109.47139 * 60.00896 * 26 25 5 41 41 H 1.09006 * 109.46479 * 180.02562 * 26 25 5 42 42 H 1.08997 * 109.47683 * 299.99782 * 26 25 5 43 43 H 1.09000 * 109.47409 * 299.99819 * 27 25 5 44 44 H 1.09002 * 109.47303 * 59.99775 * 27 25 5 45 45 H 1.09004 * 109.47010 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9565 0.7804 0.8892 7 7 3.9819 2.6795 0.0002 8 6 5.1876 3.0254 0.4932 9 8 5.9305 2.1715 0.9378 10 6 5.6059 4.4391 0.4934 11 6 4.8552 5.5360 0.0141 12 7 5.5617 6.6178 0.1935 13 7 6.7840 6.2690 0.7789 14 6 7.8580 7.1988 1.1368 15 6 8.8019 7.3484 -0.0284 16 1 8.6198 6.8055 -0.9441 17 6 9.8947 8.1832 0.0724 18 7 10.7154 8.3179 -0.9463 19 14 10.2093 9.1227 1.6560 20 1 11.0630 8.3055 2.5551 21 1 10.8993 10.4004 1.3447 22 1 8.9159 9.4093 2.3269 23 6 6.8040 4.9391 0.9626 24 6 7.9276 4.1394 1.5699 25 6 4.1130 0.5814 -1.2501 26 6 3.6669 1.3495 -2.4958 27 6 5.6414 0.5514 -1.1894 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.3891 3.3607 -0.3543 32 1 3.8679 5.4877 -0.4210 33 1 8.4023 6.8111 1.9980 34 1 7.4301 8.1701 1.3847 35 1 11.4843 8.9049 -0.8753 36 1 7.7822 4.0691 2.6479 37 1 7.9359 3.1386 1.1383 38 1 8.8776 4.6322 1.3629 39 1 3.7311 -0.4386 -1.2960 40 1 4.0488 2.3693 -2.4499 41 1 4.0560 0.8552 -3.3861 42 1 2.5780 1.3708 -2.5392 43 1 6.0233 1.5713 -1.1434 44 1 5.9592 0.0041 -0.3019 45 1 6.0308 0.0570 -2.0794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886329162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:47 Heat of formation + Delta-G solvation = -75.968866 kcal Electronic energy + Delta-G solvation = -27970.704326 eV Core-core repulsion = 23989.182475 eV Total energy + Delta-G solvation = -3981.521851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44648 -41.88397 -40.27928 -37.77357 -37.09747 -35.78580 -34.35063 -33.71076 -32.80884 -30.29259 -29.43124 -28.34730 -28.05495 -27.32098 -24.95342 -23.57497 -22.68564 -21.65957 -20.74848 -20.50353 -19.27945 -19.06291 -18.28712 -17.91469 -17.58059 -16.84042 -16.58520 -16.36271 -16.27128 -15.81337 -15.43108 -15.00539 -14.67806 -14.65852 -14.57699 -14.42187 -14.11468 -13.91032 -13.76343 -13.66204 -13.42396 -13.16290 -13.02104 -12.96968 -12.80619 -12.57557 -12.41570 -12.15465 -12.06223 -11.85565 -11.85119 -11.74489 -11.71859 -11.47699 -10.91780 -10.81193 -10.26693 -10.15584 -9.47580 -8.43025 -6.55068 0.64888 0.99932 1.28020 1.32215 1.34453 1.37787 1.45921 1.67534 2.24705 2.34914 2.52991 2.89269 3.51890 3.66898 3.72506 3.75417 3.91836 4.09379 4.15929 4.19286 4.32002 4.35917 4.43366 4.48741 4.57044 4.63395 4.69281 4.73812 4.75195 4.81848 4.92404 5.03743 5.06902 5.13210 5.13615 5.18033 5.23882 5.30356 5.43206 5.52815 5.59756 5.84144 6.21124 6.47341 6.48175 6.57487 6.77847 7.08878 7.27830 8.73388 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025202 B = 0.002808 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.760705 B = 9968.104484 C =10272.327509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.470 3.530 4 O -0.524 6.524 5 C 0.162 3.838 6 H 0.128 0.872 7 N -0.707 5.707 8 C 0.616 3.384 9 O -0.558 6.558 10 C -0.329 4.329 11 C 0.077 3.923 12 N -0.333 5.333 13 N -0.338 5.338 14 C 0.234 3.766 15 C -0.553 4.553 16 H 0.027 0.973 17 C 0.024 3.976 18 N -0.934 5.934 19 Si 0.948 3.052 20 H -0.251 1.251 21 H -0.278 1.278 22 H -0.244 1.244 23 C 0.154 3.846 24 C -0.093 4.093 25 C -0.093 4.093 26 C -0.149 4.149 27 C -0.136 4.136 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.135 0.865 31 H 0.412 0.588 32 H 0.217 0.783 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.274 0.726 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.038 0.962 44 H 0.059 0.941 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.109 -18.682 3.631 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.313 3.687 4 O -0.413 6.413 5 C 0.056 3.944 6 H 0.146 0.854 7 N -0.362 5.362 8 C 0.406 3.594 9 O -0.438 6.438 10 C -0.344 4.344 11 C -0.110 4.110 12 N -0.153 5.153 13 N -0.115 5.115 14 C 0.114 3.886 15 C -0.591 4.591 16 H 0.045 0.955 17 C -0.177 4.177 18 N -0.572 5.572 19 Si 0.769 3.231 20 H -0.175 1.175 21 H -0.203 1.203 22 H -0.167 1.167 23 C 0.018 3.982 24 C -0.151 4.151 25 C -0.112 4.112 26 C -0.207 4.207 27 C -0.193 4.193 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.153 0.847 31 H 0.249 0.751 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.533 -17.509 3.764 25.063 hybrid contribution -0.055 0.512 -0.091 0.523 sum -17.588 -16.997 3.674 24.733 Atomic orbital electron populations 1.23625 0.74218 1.05997 1.02719 1.86482 1.25237 1.31627 1.83372 1.23634 0.91651 0.81904 0.71561 1.90676 1.67250 1.37094 1.46256 1.20521 0.86355 0.84292 1.03248 0.85428 1.45356 1.18299 1.08083 1.64447 1.16843 0.80595 0.86114 0.75826 1.90705 1.53271 1.51232 1.48544 1.19873 0.98063 0.94594 1.21877 1.24423 1.00317 0.88653 0.97588 1.77104 0.93557 1.25393 1.19223 1.48780 1.13227 1.05821 1.43678 1.19897 0.82931 0.89332 0.96442 1.21186 1.09541 1.28904 0.99474 0.95501 1.25809 0.94530 0.96508 1.00806 1.70022 1.15304 1.38616 1.33304 0.85714 0.80210 0.78555 0.78606 1.17490 1.20327 1.16698 1.21999 0.96760 0.84568 0.94862 1.20665 0.93244 0.99556 1.01656 1.21520 0.96928 1.00516 0.92244 1.21861 1.00658 1.00549 0.97602 1.21811 0.93835 1.01714 1.01958 0.91967 0.91611 0.84741 0.75097 0.76695 0.90999 0.92719 0.91644 0.88107 0.88042 0.91131 0.87082 0.93228 0.90889 0.92843 0.94337 0.92145 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.39 10.37 -51.36 -0.53 -5.92 16 3 C 0.47 9.02 6.30 71.24 0.45 9.47 16 4 O -0.52 -12.41 15.59 21.95 0.34 -12.07 16 5 C 0.16 3.19 2.47 44.24 0.11 3.30 16 6 H 0.13 2.54 7.58 -2.39 -0.02 2.52 16 7 N -0.71 -16.63 3.92 -449.38 -1.76 -18.39 16 8 C 0.62 18.41 6.38 86.67 0.55 18.97 16 9 O -0.56 -18.02 11.97 -4.04 -0.05 -18.07 16 10 C -0.33 -11.42 6.13 -20.15 -0.12 -11.54 16 11 C 0.08 2.63 11.50 85.65 0.99 3.61 16 12 N -0.33 -14.20 12.50 -56.27 -0.70 -14.91 16 13 N -0.34 -14.95 3.56 -336.71 -1.20 -16.15 16 14 C 0.23 10.84 4.85 85.64 0.42 11.25 16 15 C -0.55 -31.14 9.94 25.60 0.25 -30.89 16 16 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 17 C 0.02 1.32 5.47 84.66 0.46 1.78 16 18 N -0.93 -56.27 13.96 21.45 0.30 -55.97 16 19 Si 0.95 40.25 27.47 68.60 1.88 42.13 16 20 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 23 C 0.15 6.00 7.01 42.14 0.30 6.30 16 24 C -0.09 -3.14 9.34 71.24 0.67 -2.47 16 25 C -0.09 -1.60 2.71 -10.80 -0.03 -1.63 16 26 C -0.15 -2.57 8.79 71.98 0.63 -1.94 16 27 C -0.14 -2.91 7.79 71.98 0.56 -2.35 16 28 H 0.06 0.66 8.13 -2.38 -0.02 0.64 16 29 H 0.07 0.65 8.13 -2.39 -0.02 0.63 16 30 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.41 9.07 6.75 -92.70 -0.63 8.45 16 32 H 0.22 5.26 7.50 -2.91 -0.02 5.23 16 33 H 0.07 2.96 7.06 -2.38 -0.02 2.95 16 34 H 0.05 2.52 7.19 -2.39 -0.02 2.50 16 35 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.10 3.35 6.50 -2.39 -0.02 3.33 16 38 H 0.07 2.54 7.70 -2.39 -0.02 2.52 16 39 H 0.11 1.47 8.00 -2.38 -0.02 1.45 16 40 H 0.05 1.01 7.48 -2.39 -0.02 0.99 16 41 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.05 0.86 7.38 -2.39 -0.02 0.84 16 43 H 0.04 1.05 5.65 -2.39 -0.01 1.04 16 44 H 0.06 1.33 7.84 -2.39 -0.02 1.32 16 45 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -71.95 371.15 5.04 -66.91 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.33 Total: 27.10 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 6.43 Total: 5.32 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -3.37 Total: -105.41 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -0.24 Total: -36.05 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.88 Total: 42.13 kcal Total: -71.95 5.04 -66.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886329162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.059 kcal (2) G-P(sol) polarization free energy of solvation -71.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds