Wall clock time and date at job start Tue Mar 31 2020 14:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.46779 * 179.97438 * 8 7 6 10 10 O 1.20828 * 120.00167 * 0.02562 * 9 8 7 11 11 O 1.34235 * 119.99813 * 179.97438 * 9 8 7 12 12 C 1.45202 * 116.99637 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46594 * 150.00170 * 12 11 9 14 14 C 1.52998 * 109.47200 * 269.99842 * 12 11 9 15 15 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 16 16 N 1.30448 * 108.02337 * 359.61207 * 15 3 2 17 17 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75762 * 359.97438 * 17 2 1 19 19 C 1.50696 * 109.46974 * 90.00112 * 18 17 2 20 20 H 1.08001 * 120.00163 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99873 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99784 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99944 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47036 * 89.99828 * 23 21 19 25 25 H 1.48501 * 109.47338 * 209.99683 * 23 21 19 26 26 H 1.48499 * 109.47125 * 329.99973 * 23 21 19 27 27 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 28 28 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 29 29 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 30 30 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 32 32 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 33 33 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 34 34 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 35 35 H 1.08993 * 109.47270 * 30.00158 * 12 11 9 36 36 H 1.08993 * 109.47323 * 60.00019 * 13 12 11 37 37 H 1.09004 * 109.46789 * 179.97438 * 13 12 11 38 38 H 1.08994 * 109.47084 * 299.99215 * 13 12 11 39 39 H 1.08993 * 109.47697 * 180.02562 * 14 12 11 40 40 H 1.09009 * 109.47303 * 300.00680 * 14 12 11 41 41 H 1.08998 * 109.46868 * 59.99965 * 14 12 11 42 42 H 1.08000 * 125.99145 * 179.77305 * 15 3 2 43 43 H 1.09004 * 109.46911 * 210.00324 * 18 17 2 44 44 H 1.09002 * 109.46643 * 329.99944 * 18 17 2 45 45 H 0.97003 * 119.99565 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 6 3.1422 7.2640 0.0121 10 8 1.9635 7.5298 0.0067 11 8 4.0526 8.2504 0.0186 12 6 3.5490 9.6122 0.0181 13 6 4.5400 10.5226 0.7462 14 6 3.3798 10.0930 -1.4245 15 6 3.6589 0.6498 -0.0059 16 7 3.6340 -0.6545 -0.0007 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4759 -0.0006 19 6 1.6946 -2.9535 -1.4214 20 1 1.9103 -2.2855 -2.2423 21 6 1.2772 -4.2431 -1.6734 22 7 1.1411 -4.6597 -2.9134 23 14 0.9035 -5.3981 -0.2537 24 1 -0.5276 -5.2730 0.1227 25 1 1.1865 -6.7965 -0.6655 26 1 1.7543 -5.0430 0.9105 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2972 0.0098 31 1 1.7699 5.1049 -0.8874 32 1 1.7618 5.1023 0.8925 33 1 4.1842 5.6296 0.9054 34 1 4.1932 5.6324 -0.8745 35 1 2.5856 9.6435 0.5269 36 1 5.5034 10.4914 0.2375 37 1 4.1622 11.5451 0.7455 38 1 4.6604 10.1802 1.7739 39 1 3.0022 11.1154 -1.4249 40 1 4.3434 10.0617 -1.9333 41 1 2.6739 9.4444 -1.9431 42 1 4.5448 1.2675 -0.0108 43 1 2.5848 -3.0960 0.5130 44 1 0.8915 -2.5472 0.5136 45 1 0.8471 -5.5669 -3.0907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887793040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:30 Heat of formation + Delta-G solvation = -65.526314 kcal Electronic energy + Delta-G solvation = -26221.704000 eV Core-core repulsion = 22240.634972 eV Total energy + Delta-G solvation = -3981.069028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99122 -40.83718 -38.88797 -37.34898 -35.16603 -33.92002 -33.62159 -32.25333 -31.49723 -30.98306 -27.95139 -27.77444 -26.83766 -24.98124 -23.06292 -22.27770 -21.79016 -20.87300 -19.95792 -19.01429 -18.15433 -17.25022 -17.19288 -16.88191 -16.49042 -15.53837 -15.41350 -15.15237 -14.82767 -14.57472 -14.25515 -14.09438 -13.97538 -13.64702 -13.37636 -13.15645 -12.78539 -12.69780 -12.60767 -12.56305 -12.29284 -12.22689 -12.20572 -12.07174 -11.79733 -11.60243 -11.38193 -11.22461 -11.01351 -10.84630 -10.78393 -10.41337 -10.24973 -9.80178 -9.48129 -9.04377 -8.85391 -8.66411 -7.98178 -6.33340 -4.38088 1.85391 2.11480 2.15463 2.71509 3.05121 3.12038 3.17883 3.22471 3.51871 3.86497 4.15315 4.21396 4.30683 4.42261 4.49731 4.64275 4.66336 4.90753 4.99066 5.04655 5.05867 5.17365 5.22802 5.27253 5.36016 5.46276 5.55095 5.58957 5.63627 5.67133 5.76096 5.88023 6.04743 6.12359 6.26117 6.41360 6.44265 6.55776 6.59029 7.00238 7.17825 7.39457 7.54729 7.66324 8.19304 8.26324 8.55497 8.69839 9.20497 10.78858 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.037538 B = 0.001884 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.728152 B =14854.862979 C =14993.433108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.169 3.831 3 C -0.330 4.330 4 C 0.605 3.395 5 O -0.550 6.550 6 N -0.737 5.737 7 C 0.135 3.865 8 C -0.127 4.127 9 C 0.467 3.533 10 O -0.501 6.501 11 O -0.354 6.354 12 C 0.079 3.921 13 C -0.150 4.150 14 C -0.171 4.171 15 C 0.061 3.939 16 N -0.292 5.292 17 N -0.314 5.314 18 C 0.224 3.776 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.081 3.919 22 N -0.883 5.883 23 Si 0.873 3.127 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.263 1.263 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.399 0.601 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.178 0.822 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.146 25.938 7.853 28.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.033 3.967 3 C -0.345 4.345 4 C 0.396 3.604 5 O -0.429 6.429 6 N -0.390 5.390 7 C 0.011 3.989 8 C -0.165 4.165 9 C 0.309 3.691 10 O -0.388 6.388 11 O -0.272 6.272 12 C 0.025 3.975 13 C -0.207 4.207 14 C -0.228 4.228 15 C -0.126 4.126 16 N -0.112 5.112 17 N -0.090 5.090 18 C 0.106 3.894 19 C -0.584 4.584 20 H 0.100 0.900 21 C -0.124 4.124 22 N -0.519 5.519 23 Si 0.698 3.302 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.188 1.188 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.233 0.767 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.195 0.805 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.560 24.826 7.729 26.816 hybrid contribution -0.110 -0.026 0.413 0.428 sum 6.450 24.800 8.143 26.888 Atomic orbital electron populations 1.20604 0.86689 1.03701 1.04287 1.21476 0.94986 0.86406 0.93865 1.19634 0.93130 0.92420 1.29327 1.17247 0.84953 0.83770 0.74475 1.90719 1.16661 1.84362 1.51141 1.45622 1.09925 1.05119 1.78337 1.20943 0.94281 0.79520 1.04119 1.21532 1.00704 0.87537 1.06760 1.23413 0.84684 0.88644 0.72351 1.90715 1.18585 1.84663 1.44840 1.86561 1.40295 1.16488 1.83819 1.22765 0.99029 0.77997 0.97732 1.21896 0.99548 0.98465 1.00789 1.22219 1.02983 1.02160 0.95469 1.23744 0.96372 0.92547 0.99979 1.77144 0.98093 1.12398 1.23555 1.48902 1.02753 1.07533 1.49817 1.20158 0.95733 0.73309 1.00223 1.21088 1.48087 0.99184 0.90000 0.90025 1.24792 0.94284 0.97411 0.95873 1.69865 1.45113 1.18248 1.18664 0.86902 0.79524 0.81039 0.82692 1.19503 1.20359 1.18789 0.89424 0.91101 0.88627 0.76714 0.90549 0.90597 0.86831 0.86784 0.89593 0.91306 0.90315 0.91621 0.90626 0.91449 0.91815 0.80499 0.92709 0.93405 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.57 36.01 0.34 -1.33 16 2 C 0.17 3.36 7.01 -81.61 -0.57 2.79 16 3 C -0.33 -5.81 6.13 -105.07 -0.64 -6.45 16 4 C 0.61 9.76 7.81 -12.52 -0.10 9.66 16 5 O -0.55 -10.50 14.84 5.28 0.08 -10.43 16 6 N -0.74 -8.32 5.55 -61.38 -0.34 -8.66 16 7 C 0.14 1.41 4.96 -4.04 -0.02 1.39 16 8 C -0.13 -0.86 5.93 -27.88 -0.17 -1.02 16 9 C 0.47 4.31 7.93 36.00 0.29 4.59 16 10 O -0.50 -6.22 15.20 -18.75 -0.29 -6.50 16 11 O -0.35 -2.95 9.88 -39.27 -0.39 -3.33 16 12 C 0.08 0.55 3.18 -26.73 -0.09 0.47 16 13 C -0.15 -0.69 9.57 37.16 0.36 -0.34 16 14 C -0.17 -1.05 9.55 37.16 0.35 -0.69 16 15 C 0.06 1.00 11.50 -16.98 -0.20 0.81 16 16 N -0.29 -6.04 12.50 30.86 0.39 -5.65 16 17 N -0.31 -6.84 3.56 -57.77 -0.21 -7.05 16 18 C 0.22 5.19 5.03 -5.19 -0.03 5.17 16 19 C -0.55 -14.89 9.94 -34.44 -0.34 -15.23 16 20 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 21 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 22 N -0.88 -25.78 13.96 55.43 0.77 -25.00 16 23 Si 0.87 19.69 27.47 -169.99 -4.67 15.02 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 27 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.07 1.17 7.05 -51.93 -0.37 0.80 16 29 H 0.10 1.62 6.50 -51.93 -0.34 1.28 16 30 H 0.40 3.23 7.43 -40.82 -0.30 2.93 16 31 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.69 7.15 -51.93 -0.37 0.31 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.18 1.96 7.50 -52.49 -0.39 1.57 16 43 H 0.06 1.27 7.20 -51.93 -0.37 0.89 16 44 H 0.05 1.02 6.44 -51.93 -0.33 0.69 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -34.63 382.42 -6.51 -41.14 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.72 Total: 2.77 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.90 Total: 1.93 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.61 Total: -46.36 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.59 Total: -20.26 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.67 Total: 15.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.63 -6.51 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887793040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.391 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds