Wall clock time and date at job start Tue Mar 31 2020 14:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.46779 * 179.97438 * 8 7 6 10 10 O 1.20828 * 120.00167 * 0.02562 * 9 8 7 11 11 O 1.34235 * 119.99813 * 179.97438 * 9 8 7 12 12 C 1.45202 * 116.99637 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46594 * 150.00170 * 12 11 9 14 14 C 1.52998 * 109.47200 * 269.99842 * 12 11 9 15 15 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 16 16 N 1.30448 * 108.02337 * 359.61207 * 15 3 2 17 17 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75762 * 359.97438 * 17 2 1 19 19 C 1.50696 * 109.46974 * 90.00112 * 18 17 2 20 20 H 1.08001 * 120.00163 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99873 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99784 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99944 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47036 * 89.99828 * 23 21 19 25 25 H 1.48501 * 109.47338 * 209.99683 * 23 21 19 26 26 H 1.48499 * 109.47125 * 329.99973 * 23 21 19 27 27 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 28 28 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 29 29 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 30 30 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 32 32 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 33 33 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 34 34 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 35 35 H 1.08993 * 109.47270 * 30.00158 * 12 11 9 36 36 H 1.08993 * 109.47323 * 60.00019 * 13 12 11 37 37 H 1.09004 * 109.46789 * 179.97438 * 13 12 11 38 38 H 1.08994 * 109.47084 * 299.99215 * 13 12 11 39 39 H 1.08993 * 109.47697 * 180.02562 * 14 12 11 40 40 H 1.09009 * 109.47303 * 300.00680 * 14 12 11 41 41 H 1.08998 * 109.46868 * 59.99965 * 14 12 11 42 42 H 1.08000 * 125.99145 * 179.77305 * 15 3 2 43 43 H 1.09004 * 109.46911 * 210.00324 * 18 17 2 44 44 H 1.09002 * 109.46643 * 329.99944 * 18 17 2 45 45 H 0.97003 * 119.99565 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 6 3.1422 7.2640 0.0121 10 8 1.9635 7.5298 0.0067 11 8 4.0526 8.2504 0.0186 12 6 3.5490 9.6122 0.0181 13 6 4.5400 10.5226 0.7462 14 6 3.3798 10.0930 -1.4245 15 6 3.6589 0.6498 -0.0059 16 7 3.6340 -0.6545 -0.0007 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4759 -0.0006 19 6 1.6946 -2.9535 -1.4214 20 1 1.9103 -2.2855 -2.2423 21 6 1.2772 -4.2431 -1.6734 22 7 1.1411 -4.6597 -2.9134 23 14 0.9035 -5.3981 -0.2537 24 1 -0.5276 -5.2730 0.1227 25 1 1.1865 -6.7965 -0.6655 26 1 1.7543 -5.0430 0.9105 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2972 0.0098 31 1 1.7699 5.1049 -0.8874 32 1 1.7618 5.1023 0.8925 33 1 4.1842 5.6296 0.9054 34 1 4.1932 5.6324 -0.8745 35 1 2.5856 9.6435 0.5269 36 1 5.5034 10.4914 0.2375 37 1 4.1622 11.5451 0.7455 38 1 4.6604 10.1802 1.7739 39 1 3.0022 11.1154 -1.4249 40 1 4.3434 10.0617 -1.9333 41 1 2.6739 9.4444 -1.9431 42 1 4.5448 1.2675 -0.0108 43 1 2.5848 -3.0960 0.5130 44 1 0.8915 -2.5472 0.5136 45 1 0.8471 -5.5669 -3.0907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887793040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:29 Heat of formation + Delta-G solvation = -89.756187 kcal Electronic energy + Delta-G solvation = -26222.754686 eV Core-core repulsion = 22240.634972 eV Total energy + Delta-G solvation = -3982.119714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.33414 -41.65557 -40.12873 -38.07077 -36.22673 -35.74439 -34.20118 -33.98641 -32.88594 -32.07117 -29.62624 -28.27962 -28.19411 -25.99482 -24.78919 -23.37325 -22.65471 -21.57132 -21.25928 -20.48294 -19.28147 -18.89610 -18.49784 -17.59131 -17.24694 -16.85911 -16.58024 -16.41325 -16.21930 -15.77490 -15.37561 -15.25356 -14.80007 -14.73578 -14.55403 -14.36625 -14.13559 -13.98561 -13.77899 -13.70283 -13.16974 -13.16130 -13.13363 -13.01814 -12.92885 -12.72406 -12.56057 -12.52501 -12.14713 -11.89932 -11.84825 -11.75512 -11.66450 -11.45495 -10.91663 -10.85130 -10.25788 -10.15311 -9.43544 -8.42787 -6.54782 0.65341 1.15867 1.33074 1.34516 1.35710 1.44482 1.47667 1.68894 2.24956 2.46377 2.54169 2.89733 3.50964 3.71948 3.77321 3.82293 3.87323 3.94965 4.05890 4.11455 4.15933 4.20706 4.40496 4.46516 4.56016 4.67714 4.69219 4.72661 4.76681 4.80814 4.85717 4.89119 4.93776 5.05467 5.14385 5.15088 5.18285 5.23196 5.44845 5.52780 5.65578 5.83474 6.20901 6.48168 6.62049 6.70934 6.81946 7.09120 7.35971 8.73628 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.037538 B = 0.001884 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.728152 B =14854.862979 C =14993.433108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.146 3.854 3 C -0.329 4.329 4 C 0.604 3.396 5 O -0.585 6.585 6 N -0.711 5.711 7 C 0.138 3.862 8 C -0.114 4.114 9 C 0.467 3.533 10 O -0.542 6.542 11 O -0.353 6.353 12 C 0.070 3.930 13 C -0.144 4.144 14 C -0.168 4.168 15 C 0.084 3.916 16 N -0.333 5.333 17 N -0.339 5.339 18 C 0.233 3.767 19 C -0.553 4.553 20 H 0.026 0.974 21 C 0.023 3.977 22 N -0.935 5.935 23 Si 0.949 3.051 24 H -0.254 1.254 25 H -0.277 1.277 26 H -0.241 1.241 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.419 0.581 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.042 0.958 42 H 0.234 0.766 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.952 27.132 9.886 30.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.010 3.990 3 C -0.344 4.344 4 C 0.393 3.607 5 O -0.466 6.466 6 N -0.364 5.364 7 C 0.014 3.986 8 C -0.152 4.152 9 C 0.311 3.689 10 O -0.432 6.432 11 O -0.270 6.270 12 C 0.016 3.984 13 C -0.201 4.201 14 C -0.226 4.226 15 C -0.103 4.103 16 N -0.152 5.152 17 N -0.115 5.115 18 C 0.113 3.887 19 C -0.591 4.591 20 H 0.044 0.956 21 C -0.177 4.177 22 N -0.573 5.573 23 Si 0.770 3.230 24 H -0.178 1.178 25 H -0.203 1.203 26 H -0.165 1.165 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.256 0.744 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.250 0.750 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.429 26.072 9.771 29.091 hybrid contribution -0.610 -0.179 -0.316 0.710 sum 7.819 25.893 9.455 28.652 Atomic orbital electron populations 1.20588 0.85954 1.04495 1.03752 1.21967 0.95930 0.86859 0.94206 1.19912 0.93524 0.92778 1.28224 1.17145 0.85005 0.83963 0.74537 1.90708 1.18322 1.84740 1.52874 1.45343 1.10292 1.04638 1.76166 1.20881 0.95907 0.79383 1.02442 1.21500 0.99142 0.84848 1.09660 1.23877 0.84193 0.89682 0.71146 1.90710 1.20283 1.85315 1.46851 1.86559 1.40008 1.16985 1.83415 1.22993 0.99195 0.77827 0.98429 1.21901 0.99162 0.98681 1.00396 1.22216 1.02949 1.02634 0.94772 1.24596 0.97618 0.91551 0.96532 1.77093 0.97850 1.14585 1.25699 1.48753 1.03577 1.07224 1.51978 1.19889 0.96805 0.74611 0.97348 1.21192 1.48152 0.98818 0.90982 0.95569 1.25822 0.93634 0.99248 0.99036 1.70028 1.46613 1.19075 1.21576 0.85697 0.80393 0.77812 0.79071 1.17779 1.20260 1.16475 0.90563 0.90112 0.87957 0.74359 0.92644 0.92139 0.83579 0.83975 0.91122 0.90674 0.88646 0.91640 0.88969 0.90585 0.93847 0.75007 0.92442 0.91259 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 9.57 71.24 0.68 -2.54 16 2 C 0.15 5.77 7.01 42.14 0.30 6.07 16 3 C -0.33 -11.16 6.13 -20.15 -0.12 -11.28 16 4 C 0.60 18.66 7.81 86.67 0.68 19.34 16 5 O -0.59 -22.27 14.84 -4.04 -0.06 -22.33 16 6 N -0.71 -14.15 5.55 -466.36 -2.59 -16.74 16 7 C 0.14 2.65 4.96 86.38 0.43 3.08 16 8 C -0.11 -1.19 5.93 29.85 0.18 -1.01 16 9 C 0.47 7.99 7.93 71.23 0.56 8.56 16 10 O -0.54 -13.54 15.20 21.96 0.33 -13.21 16 11 O -0.35 -5.27 9.88 -51.47 -0.51 -5.78 16 12 C 0.07 0.90 3.18 30.60 0.10 1.00 16 13 C -0.14 -1.05 9.57 71.98 0.69 -0.36 16 14 C -0.17 -1.90 9.55 71.98 0.69 -1.21 16 15 C 0.08 2.55 11.50 85.65 0.99 3.54 16 16 N -0.33 -13.44 12.50 -56.28 -0.70 -14.14 16 17 N -0.34 -14.77 3.56 -336.70 -1.20 -15.97 16 18 C 0.23 10.76 5.03 85.63 0.43 11.19 16 19 C -0.55 -31.18 9.94 25.60 0.25 -30.92 16 20 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 21 C 0.02 1.26 5.47 84.65 0.46 1.73 16 22 N -0.93 -56.37 13.96 21.45 0.30 -56.07 16 23 Si 0.95 40.22 27.47 68.60 1.88 42.11 16 24 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 26 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 27 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.08 2.65 7.05 -2.39 -0.02 2.63 16 29 H 0.10 3.48 6.50 -2.39 -0.02 3.47 16 30 H 0.42 4.94 7.43 -92.71 -0.69 4.25 16 31 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 32 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 33 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 1.13 7.15 -2.39 -0.02 1.11 16 36 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.23 3.99 7.50 -2.91 -0.02 3.97 16 43 H 0.06 2.60 7.20 -2.38 -0.02 2.58 16 44 H 0.07 2.87 6.44 -2.39 -0.02 2.85 16 45 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -80.72 382.42 4.03 -76.68 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.26 Total: 18.28 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.31 Total: 7.18 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -4.19 Total: -102.92 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -0.23 Total: -41.32 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.88 Total: 42.11 kcal Total: -80.72 4.03 -76.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887793040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.072 kcal (2) G-P(sol) polarization free energy of solvation -80.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds