Wall clock time and date at job start Tue Mar 31 2020 14:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34222 * 117.00500 * 2 1 4 4 O 1.20832 * 119.99273 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00689 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47188 * 179.97438 * 5 3 2 7 7 C 1.53009 * 109.46688 * 179.97438 * 6 5 3 8 8 N 1.46499 * 109.46713 * 180.02562 * 7 6 5 9 9 C 1.46502 * 120.00095 * 270.00037 * 8 7 6 10 10 C 1.34773 * 120.00214 * 90.00147 * 8 7 6 11 11 O 1.21613 * 119.99927 * 3.92171 * 10 8 7 12 12 C 1.47425 * 120.00596 * 183.91533 * 10 8 7 13 13 C 1.41294 * 126.41308 * 328.09005 * 12 10 8 14 14 N 1.30452 * 108.02262 * 179.70042 * 13 12 10 15 15 N 1.39936 * 108.89578 * 0.40418 * 14 13 12 16 16 C 1.46502 * 125.75308 * 179.84866 * 15 14 13 17 17 C 1.50696 * 109.46951 * 269.69173 * 16 15 14 18 18 H 1.08001 * 120.00304 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00008 * 179.72412 * 17 16 15 20 20 N 1.31522 * 119.99785 * 0.28017 * 19 17 16 21 21 Si 1.86801 * 120.00326 * 180.27329 * 19 17 16 22 22 H 1.48498 * 109.46980 * 90.00140 * 21 19 17 23 23 H 1.48501 * 109.47113 * 209.99841 * 21 19 17 24 24 H 1.48500 * 109.47100 * 330.00342 * 21 19 17 25 25 C 1.34263 * 108.49245 * 359.58528 * 15 14 13 26 26 C 1.50697 * 126.29206 * 180.21999 * 25 15 14 27 27 H 1.09002 * 109.46557 * 60.00394 * 1 2 3 28 28 H 1.09007 * 109.47034 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47127 * 300.00409 * 1 2 3 30 30 H 1.08996 * 109.46790 * 59.99567 * 5 3 2 31 31 H 1.09002 * 109.46449 * 299.99981 * 5 3 2 32 32 H 1.09001 * 109.47012 * 60.00409 * 6 5 3 33 33 H 1.08993 * 109.47431 * 299.99733 * 6 5 3 34 34 H 1.09001 * 109.46702 * 60.00657 * 7 6 5 35 35 H 1.08993 * 109.47324 * 300.00236 * 7 6 5 36 36 H 1.08998 * 109.47416 * 275.63764 * 9 8 7 37 37 H 1.08998 * 109.47070 * 35.63953 * 9 8 7 38 38 H 1.09004 * 109.47001 * 155.63543 * 9 8 7 39 39 H 1.07994 * 125.98948 * 359.91785 * 13 12 10 40 40 H 1.09004 * 109.46906 * 149.69032 * 16 15 14 41 41 H 1.08998 * 109.46672 * 29.69049 * 16 15 14 42 42 H 0.96992 * 120.00093 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.47156 * 89.99927 * 26 25 15 44 44 H 1.08994 * 109.47308 * 209.99655 * 26 25 15 45 45 H 1.08996 * 109.47307 * 330.00472 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0001 2.7420 -0.0011 7 6 5.5281 2.8220 -0.0011 8 7 5.9435 4.2269 -0.0009 9 6 6.1512 4.9294 -1.2696 10 6 6.1345 4.8730 1.1663 11 8 6.0318 4.2715 2.2182 12 6 6.4682 6.3090 1.1680 13 6 7.2113 6.9986 0.1837 14 7 7.2857 8.2517 0.5385 15 7 6.6118 8.4196 1.7534 16 6 6.4700 9.6800 2.4866 17 6 7.6199 9.8338 3.4483 18 1 8.3801 9.0690 3.5079 19 6 7.7042 10.9534 4.2487 20 7 6.7781 11.8844 4.1766 21 14 9.1337 11.1477 5.4354 22 1 10.2488 11.8545 4.7556 23 1 8.6942 11.9357 6.6149 24 1 9.5944 9.8075 5.8790 25 6 6.1123 7.2319 2.1309 26 6 5.3109 6.9567 3.3771 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.9557 0.7808 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 3.6108 3.2363 0.8890 33 1 3.6102 3.2359 -0.8910 34 1 5.9178 2.3276 -0.8909 35 1 5.9178 2.3282 0.8890 36 1 7.1586 4.7299 -1.6348 37 1 5.4234 4.5799 -2.0019 38 1 6.0260 6.0013 -1.1161 39 1 7.6393 6.5650 -0.7079 40 1 5.5312 9.6744 3.0405 41 1 6.4714 10.5120 1.7824 42 1 6.8376 12.6722 4.7393 43 1 4.2504 7.0920 3.1644 44 1 5.4879 5.9322 3.7041 45 1 5.6144 7.6470 4.1641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888189434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:21 Heat of formation + Delta-G solvation = -52.292425 kcal Electronic energy + Delta-G solvation = -26928.990835 eV Core-core repulsion = 22948.495671 eV Total energy + Delta-G solvation = -3980.495163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90107 -40.72199 -39.07346 -36.95425 -35.81723 -34.09045 -33.49928 -32.04730 -31.14898 -29.16611 -27.75365 -27.07023 -26.78873 -25.81101 -23.60263 -22.81763 -21.20547 -20.79380 -19.78426 -18.43972 -17.85363 -17.08935 -16.92392 -16.80794 -16.67442 -15.74042 -15.48475 -15.17532 -14.87189 -14.58759 -14.26403 -13.91083 -13.59881 -13.44998 -13.29542 -12.96394 -12.60909 -12.53021 -12.40433 -12.36486 -12.25175 -12.13014 -11.91801 -11.82950 -11.58207 -11.45881 -11.15393 -11.06604 -10.91522 -10.88007 -10.78021 -10.34697 -10.18705 -9.90821 -9.39678 -8.69895 -8.63507 -8.51667 -7.86893 -6.32332 -4.40142 1.92300 2.23769 2.37390 2.81007 3.09301 3.19743 3.26006 3.30103 3.44778 3.75334 4.25814 4.39156 4.61538 4.67780 4.75792 4.83144 4.92017 5.02474 5.05322 5.12597 5.20328 5.22295 5.26586 5.28085 5.42174 5.49775 5.58270 5.73361 5.78380 5.88291 5.96618 6.03232 6.04861 6.11517 6.47745 6.55468 6.65568 6.80940 6.91308 7.18051 7.44886 7.56881 7.58195 7.78687 7.81116 8.39609 8.55205 8.66193 9.26863 10.75771 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021732 B = 0.002327 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.132444 B =12030.629097 C =12536.035674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.504 6.504 5 C -0.109 4.109 6 C -0.127 4.127 7 C 0.120 3.880 8 N -0.618 5.618 9 C 0.068 3.932 10 C 0.606 3.394 11 O -0.550 6.550 12 C -0.330 4.330 13 C 0.051 3.949 14 N -0.297 5.297 15 N -0.313 5.313 16 C 0.251 3.749 17 C -0.540 4.540 18 H 0.066 0.934 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.160 3.840 26 C -0.102 4.102 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.181 0.819 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.269 0.731 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 -21.878 -11.077 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.391 6.391 5 C -0.147 4.147 6 C -0.165 4.165 7 C -0.003 4.003 8 N -0.352 5.352 9 C -0.075 4.075 10 C 0.397 3.603 11 O -0.428 6.428 12 C -0.345 4.345 13 C -0.135 4.135 14 N -0.117 5.117 15 N -0.090 5.090 16 C 0.134 3.866 17 C -0.578 4.578 18 H 0.084 0.916 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.196 1.196 25 C 0.023 3.977 26 C -0.160 4.160 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.198 0.802 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.114 0.886 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.950 -20.354 -10.691 24.327 hybrid contribution 0.220 -0.438 0.610 0.783 sum -7.730 -20.793 -10.081 24.366 Atomic orbital electron populations 1.23264 0.76332 1.03638 1.02652 1.86502 1.23505 1.33731 1.84276 1.23897 0.92403 0.81248 0.72298 1.90707 1.67272 1.36328 1.44748 1.21332 0.87224 1.00125 1.06065 1.21840 0.96553 0.93606 1.04543 1.21308 0.93205 0.82504 1.03284 1.47545 1.69510 1.11601 1.06499 1.22185 1.00708 0.99530 0.85066 1.17435 0.74734 0.85525 0.82580 1.90689 1.52932 1.68135 1.31063 1.19615 1.19082 0.94106 1.01745 1.23983 0.99264 0.91281 0.98989 1.77147 1.17457 1.18310 0.98786 1.49351 1.35376 1.09094 1.15180 1.19842 0.98927 0.76812 0.91014 1.21266 1.08967 1.06473 1.21108 0.91615 1.24930 0.96725 0.94998 0.97039 1.69917 1.33606 1.09492 1.39717 0.86321 0.81738 0.78504 0.79972 1.20255 1.20803 1.19553 1.21382 0.94982 0.85875 0.95434 1.20624 0.97868 1.04668 0.92882 0.91918 0.88118 0.91821 0.87512 0.87227 0.90289 0.90878 0.90599 0.89477 0.92656 0.91847 0.89026 0.80201 0.92622 0.92513 0.92131 0.90780 0.88636 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.19 10.56 -39.24 -0.41 -3.60 16 3 C 0.46 4.57 7.96 36.00 0.29 4.85 16 4 O -0.50 -6.76 15.73 -18.76 -0.30 -7.06 16 5 C -0.11 -0.78 5.81 -27.89 -0.16 -0.94 16 6 C -0.13 -1.22 4.83 -26.73 -0.13 -1.35 16 7 C 0.12 1.15 5.46 -4.04 -0.02 1.13 16 8 N -0.62 -7.75 2.87 -182.85 -0.53 -8.27 16 9 C 0.07 0.66 9.09 59.85 0.54 1.20 16 10 C 0.61 10.24 7.52 -12.52 -0.09 10.14 16 11 O -0.55 -10.60 14.89 5.27 0.08 -10.53 16 12 C -0.33 -6.13 5.54 -105.07 -0.58 -6.72 16 13 C 0.05 0.89 9.57 -16.98 -0.16 0.73 16 14 N -0.30 -6.40 12.50 30.86 0.39 -6.02 16 15 N -0.31 -7.13 3.56 -57.77 -0.21 -7.34 16 16 C 0.25 6.29 5.78 -5.19 -0.03 6.26 16 17 C -0.54 -14.67 9.39 -34.44 -0.32 -14.99 16 18 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 19 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -24.73 13.29 55.43 0.74 -24.00 16 21 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.16 3.30 7.00 -81.60 -0.57 2.73 16 26 C -0.10 -1.87 9.66 36.00 0.35 -1.53 16 27 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.02 8.10 -51.93 -0.42 0.59 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 35 H 0.09 0.93 7.37 -51.93 -0.38 0.54 16 36 H 0.05 0.44 7.86 -51.93 -0.41 0.03 16 37 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 38 H 0.09 1.03 4.71 -51.93 -0.24 0.79 16 39 H 0.18 2.36 6.11 -52.49 -0.32 2.04 16 40 H 0.06 1.38 7.62 -51.93 -0.40 0.99 16 41 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.10 1.73 6.50 -51.93 -0.34 1.39 16 45 H 0.09 1.65 7.70 -51.93 -0.40 1.25 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -33.93 381.24 -6.12 -40.05 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.67 Total: 0.49 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 0.07 Total: 4.53 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.39 Total: -45.62 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.63 Total: -21.18 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.93 -6.12 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888189434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.247 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds