Wall clock time and date at job start Tue Mar 31 2020 14:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34222 * 117.00500 * 2 1 4 4 O 1.20832 * 119.99273 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00689 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47188 * 179.97438 * 5 3 2 7 7 C 1.53009 * 109.46688 * 179.97438 * 6 5 3 8 8 N 1.46499 * 109.46713 * 180.02562 * 7 6 5 9 9 C 1.46502 * 120.00095 * 270.00037 * 8 7 6 10 10 C 1.34773 * 120.00214 * 90.00147 * 8 7 6 11 11 O 1.21613 * 119.99927 * 3.92171 * 10 8 7 12 12 C 1.47425 * 120.00596 * 183.91533 * 10 8 7 13 13 C 1.41294 * 126.41308 * 328.09005 * 12 10 8 14 14 N 1.30452 * 108.02262 * 179.70042 * 13 12 10 15 15 N 1.39936 * 108.89578 * 0.40418 * 14 13 12 16 16 C 1.46502 * 125.75308 * 179.84866 * 15 14 13 17 17 C 1.50696 * 109.46951 * 269.69173 * 16 15 14 18 18 H 1.08001 * 120.00304 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00008 * 179.72412 * 17 16 15 20 20 N 1.31522 * 119.99785 * 0.28017 * 19 17 16 21 21 Si 1.86801 * 120.00326 * 180.27329 * 19 17 16 22 22 H 1.48498 * 109.46980 * 90.00140 * 21 19 17 23 23 H 1.48501 * 109.47113 * 209.99841 * 21 19 17 24 24 H 1.48500 * 109.47100 * 330.00342 * 21 19 17 25 25 C 1.34263 * 108.49245 * 359.58528 * 15 14 13 26 26 C 1.50697 * 126.29206 * 180.21999 * 25 15 14 27 27 H 1.09002 * 109.46557 * 60.00394 * 1 2 3 28 28 H 1.09007 * 109.47034 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47127 * 300.00409 * 1 2 3 30 30 H 1.08996 * 109.46790 * 59.99567 * 5 3 2 31 31 H 1.09002 * 109.46449 * 299.99981 * 5 3 2 32 32 H 1.09001 * 109.47012 * 60.00409 * 6 5 3 33 33 H 1.08993 * 109.47431 * 299.99733 * 6 5 3 34 34 H 1.09001 * 109.46702 * 60.00657 * 7 6 5 35 35 H 1.08993 * 109.47324 * 300.00236 * 7 6 5 36 36 H 1.08998 * 109.47416 * 275.63764 * 9 8 7 37 37 H 1.08998 * 109.47070 * 35.63953 * 9 8 7 38 38 H 1.09004 * 109.47001 * 155.63543 * 9 8 7 39 39 H 1.07994 * 125.98948 * 359.91785 * 13 12 10 40 40 H 1.09004 * 109.46906 * 149.69032 * 16 15 14 41 41 H 1.08998 * 109.46672 * 29.69049 * 16 15 14 42 42 H 0.96992 * 120.00093 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.47156 * 89.99927 * 26 25 15 44 44 H 1.08994 * 109.47308 * 209.99655 * 26 25 15 45 45 H 1.08996 * 109.47307 * 330.00472 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0001 2.7420 -0.0011 7 6 5.5281 2.8220 -0.0011 8 7 5.9435 4.2269 -0.0009 9 6 6.1512 4.9294 -1.2696 10 6 6.1345 4.8730 1.1663 11 8 6.0318 4.2715 2.2182 12 6 6.4682 6.3090 1.1680 13 6 7.2113 6.9986 0.1837 14 7 7.2857 8.2517 0.5385 15 7 6.6118 8.4196 1.7534 16 6 6.4700 9.6800 2.4866 17 6 7.6199 9.8338 3.4483 18 1 8.3801 9.0690 3.5079 19 6 7.7042 10.9534 4.2487 20 7 6.7781 11.8844 4.1766 21 14 9.1337 11.1477 5.4354 22 1 10.2488 11.8545 4.7556 23 1 8.6942 11.9357 6.6149 24 1 9.5944 9.8075 5.8790 25 6 6.1123 7.2319 2.1309 26 6 5.3109 6.9567 3.3771 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.9557 0.7808 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 3.6108 3.2363 0.8890 33 1 3.6102 3.2359 -0.8910 34 1 5.9178 2.3276 -0.8909 35 1 5.9178 2.3282 0.8890 36 1 7.1586 4.7299 -1.6348 37 1 5.4234 4.5799 -2.0019 38 1 6.0260 6.0013 -1.1161 39 1 7.6393 6.5650 -0.7079 40 1 5.5312 9.6744 3.0405 41 1 6.4714 10.5120 1.7824 42 1 6.8376 12.6722 4.7393 43 1 4.2504 7.0920 3.1644 44 1 5.4879 5.9322 3.7041 45 1 5.6144 7.6470 4.1641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888189434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:20 Heat of formation + Delta-G solvation = -73.997709 kcal Electronic energy + Delta-G solvation = -26929.932046 eV Core-core repulsion = 22948.495671 eV Total energy + Delta-G solvation = -3981.436375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.39033 -41.49509 -40.30392 -37.72148 -36.88535 -35.85170 -34.59542 -33.71572 -32.73168 -30.10378 -29.01383 -28.34274 -28.00537 -26.83053 -25.38895 -23.88502 -22.49062 -21.54032 -21.18847 -19.82364 -18.86323 -18.62372 -18.17643 -17.68820 -17.63429 -17.01122 -16.74623 -16.37538 -16.35330 -15.79462 -15.63400 -15.10749 -14.74271 -14.45318 -14.32343 -14.26635 -14.06367 -13.81926 -13.68337 -13.56331 -13.31288 -13.20433 -12.99109 -12.95762 -12.88099 -12.74225 -12.58863 -12.52068 -12.31780 -11.85016 -11.82933 -11.75472 -11.64110 -11.57854 -10.77615 -10.77045 -10.22548 -9.66851 -9.37235 -8.38816 -6.55311 0.72119 1.18222 1.33881 1.36414 1.38413 1.48236 1.65017 1.76438 2.17696 2.31880 2.43686 2.92906 3.69749 3.72883 3.74031 3.96426 4.01480 4.12483 4.18582 4.28666 4.30950 4.36384 4.43355 4.49785 4.57441 4.58522 4.63850 4.71971 4.73349 4.78081 4.85256 4.89766 4.99839 5.04135 5.10201 5.16021 5.28088 5.40910 5.48141 5.64203 5.74161 5.76106 6.05168 6.44281 6.54093 6.72625 6.84216 7.15771 7.30340 8.68908 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021732 B = 0.002327 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.132444 B =12030.629097 C =12536.035674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.457 3.543 4 O -0.548 6.548 5 C -0.102 4.102 6 C -0.119 4.119 7 C 0.119 3.881 8 N -0.609 5.609 9 C 0.060 3.940 10 C 0.601 3.399 11 O -0.582 6.582 12 C -0.329 4.329 13 C 0.075 3.925 14 N -0.336 5.336 15 N -0.338 5.338 16 C 0.268 3.732 17 C -0.556 4.556 18 H 0.050 0.950 19 C 0.023 3.977 20 N -0.916 5.916 21 Si 0.972 3.028 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.271 1.271 25 C 0.137 3.863 26 C -0.094 4.094 27 H 0.060 0.940 28 H 0.132 0.868 29 H 0.055 0.945 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.228 0.772 40 H 0.049 0.951 41 H 0.032 0.968 42 H 0.275 0.725 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 -24.474 -12.657 28.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.438 6.438 5 C -0.139 4.139 6 C -0.158 4.158 7 C -0.003 4.003 8 N -0.341 5.341 9 C -0.082 4.082 10 C 0.391 3.609 11 O -0.463 6.463 12 C -0.344 4.344 13 C -0.111 4.111 14 N -0.156 5.156 15 N -0.115 5.115 16 C 0.149 3.851 17 C -0.594 4.594 18 H 0.068 0.932 19 C -0.178 4.178 20 N -0.554 5.554 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.196 1.196 25 C 0.002 3.998 26 C -0.152 4.152 27 H 0.079 0.921 28 H 0.151 0.849 29 H 0.074 0.926 30 H 0.164 0.836 31 H 0.143 0.857 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.244 0.756 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.115 0.885 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.024 -22.994 -12.317 27.015 hybrid contribution -0.158 0.221 0.971 1.009 sum -7.182 -22.773 -11.346 26.437 Atomic orbital electron populations 1.23508 0.75240 1.05619 1.02210 1.86501 1.24675 1.33041 1.83777 1.24488 0.93486 0.80878 0.70928 1.90695 1.68411 1.37734 1.47010 1.21388 0.85254 0.98661 1.08628 1.21699 0.96546 0.95131 1.02409 1.21563 0.92936 0.80777 1.05051 1.47623 1.67632 1.12758 1.06052 1.22415 1.03410 0.98259 0.84111 1.17292 0.75132 0.84814 0.83616 1.90671 1.54594 1.68474 1.32577 1.19953 1.18259 0.95069 1.01123 1.24710 0.97155 0.89766 0.99439 1.77093 1.18987 1.20628 0.98915 1.49077 1.37436 1.08854 1.16145 1.19346 0.97997 0.77554 0.90159 1.21393 1.09348 1.06496 1.22156 0.93174 1.25738 0.99154 0.94492 0.98422 1.69994 1.35020 1.09921 1.40458 0.85348 0.78608 0.78422 0.78102 1.19692 1.19512 1.19566 1.21873 0.95452 0.85813 0.96646 1.20578 0.98623 1.04150 0.91861 0.92078 0.84940 0.92643 0.83598 0.85695 0.94396 0.91122 0.85983 0.90435 0.89722 0.89032 0.90872 0.75606 0.93332 0.94951 0.91636 0.89148 0.88493 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -5.77 10.56 -51.34 -0.54 -6.31 16 3 C 0.46 8.54 7.96 71.24 0.57 9.10 16 4 O -0.55 -14.80 15.73 21.95 0.35 -14.45 16 5 C -0.10 -1.17 5.81 29.85 0.17 -1.00 16 6 C -0.12 -2.09 4.83 30.60 0.15 -1.94 16 7 C 0.12 1.89 5.46 86.38 0.47 2.36 16 8 N -0.61 -13.63 2.87 -850.65 -2.44 -16.08 16 9 C 0.06 0.92 9.09 127.77 1.16 2.09 16 10 C 0.60 19.72 7.52 86.66 0.65 20.37 16 11 O -0.58 -22.40 14.89 -4.07 -0.06 -22.46 16 12 C -0.33 -12.09 5.54 -20.15 -0.11 -12.21 16 13 C 0.08 2.55 9.57 85.65 0.82 3.37 16 14 N -0.34 -14.65 12.50 -56.27 -0.70 -15.36 16 15 N -0.34 -15.94 3.56 -336.70 -1.20 -17.14 16 16 C 0.27 14.11 5.78 85.63 0.50 14.61 16 17 C -0.56 -31.25 9.39 25.60 0.24 -31.01 16 18 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 19 C 0.02 1.28 5.46 84.65 0.46 1.74 16 20 N -0.92 -51.85 13.29 21.45 0.28 -51.57 16 21 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.14 5.83 7.00 42.14 0.29 6.12 16 26 C -0.09 -3.58 9.66 71.24 0.69 -2.90 16 27 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 28 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.05 0.74 8.13 -2.39 -0.02 0.73 16 30 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 34 H 0.12 0.90 8.07 -2.39 -0.02 0.88 16 35 H 0.08 1.45 7.37 -2.39 -0.02 1.43 16 36 H 0.08 0.88 7.86 -2.39 -0.02 0.86 16 37 H 0.09 0.96 8.11 -2.39 -0.02 0.94 16 38 H 0.07 1.44 4.71 -2.38 -0.01 1.43 16 39 H 0.23 5.19 6.11 -2.91 -0.02 5.17 16 40 H 0.05 2.56 7.62 -2.39 -0.02 2.54 16 41 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 44 H 0.10 3.64 6.50 -2.39 -0.02 3.62 16 45 H 0.07 2.91 7.70 -2.39 -0.02 2.90 16 Total: -1.00 -77.67 381.24 5.96 -71.71 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 1.00 Total: 13.98 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 7.26 Total: 12.24 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -4.06 Total: -100.14 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.26 Total: -43.22 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -77.67 5.96 -71.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888189434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.286 kcal (2) G-P(sol) polarization free energy of solvation -77.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds