Wall clock time and date at job start Tue Mar 31 2020 13:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34950 * 126.03672 * 2 1 4 4 C 1.35318 * 107.74553 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.04169 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.72690 * 295.51099 * 5 4 3 7 7 C 1.53962 * 109.73203 * 174.87178 * 5 4 3 8 8 S 1.74752 * 112.57018 * 159.55682 * 7 5 4 9 9 C 1.83007 * 104.46150 * 61.07319 * 8 7 5 10 10 C 1.49606 * 110.33852 * 285.64295 * 9 8 7 11 11 C 1.55113 * 113.44749 * 89.18392 * 10 9 8 12 12 N 1.42848 * 109.73517 * 56.20959 * 5 4 3 13 13 C 1.34772 * 119.02618 * 35.38207 * 12 5 4 14 14 O 1.21281 * 120.00222 * 5.54901 * 13 12 5 15 15 C 1.50698 * 120.00055 * 185.55015 * 13 12 5 16 16 C 1.52996 * 109.47351 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47351 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00254 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99978 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00036 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47283 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47416 * 120.00200 * 21 19 17 24 24 H 1.48503 * 109.46919 * 240.00008 * 21 19 17 25 25 C 1.39881 * 107.91814 * 0.02562 * 4 3 2 26 26 N 1.30836 * 108.20295 * 359.97438 * 25 4 3 27 27 H 1.09004 * 109.46867 * 89.99850 * 1 2 3 28 28 H 1.08994 * 109.47818 * 210.00242 * 1 2 3 29 29 H 1.09004 * 109.47002 * 330.00334 * 1 2 3 30 30 H 1.08001 * 126.12856 * 359.75269 * 3 2 1 31 31 H 1.09004 * 108.86350 * 280.35084 * 7 5 4 32 32 H 1.09004 * 108.86677 * 38.76086 * 7 5 4 33 33 H 1.09001 * 109.32768 * 45.90876 * 9 8 7 34 34 H 1.08999 * 109.33039 * 165.55091 * 9 8 7 35 35 H 1.08996 * 108.69160 * 210.20887 * 10 9 8 36 36 H 1.08995 * 108.68439 * 328.16020 * 10 9 8 37 37 H 1.08995 * 108.18532 * 77.69994 * 11 10 9 38 38 H 1.08993 * 108.18042 * 194.53535 * 11 10 9 39 39 H 1.08995 * 109.46956 * 300.00020 * 15 13 12 40 40 H 1.09001 * 109.46617 * 60.00273 * 15 13 12 41 41 H 1.09001 * 109.47735 * 300.00688 * 16 15 13 42 42 H 1.09011 * 109.47061 * 60.00223 * 16 15 13 43 43 H 0.97001 * 120.00116 * 180.02562 * 20 19 17 44 44 H 1.08000 * 125.89784 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5452 -0.0013 6 1 4.8088 2.1186 -0.9275 7 6 6.0320 0.6757 0.1277 8 16 7.4715 1.4988 -0.4237 9 6 7.6125 2.9572 0.6728 10 6 6.5937 3.9878 0.3009 11 6 5.2397 3.8108 1.0366 12 7 4.7244 2.4342 1.1160 13 6 4.1955 1.9998 2.2770 14 8 3.8579 0.8408 2.3935 15 6 4.0236 2.9543 3.4305 16 6 3.4062 2.2131 4.6180 17 6 3.2348 3.1674 5.7717 18 1 3.5358 4.1995 5.6681 19 6 2.6939 2.7231 6.9595 20 7 2.3278 1.4662 7.0859 21 14 2.4808 3.9062 8.3893 22 1 2.9671 5.2526 7.9943 23 1 1.0440 3.9861 8.7558 24 1 3.2627 3.4202 9.5545 25 6 3.5346 -0.7322 -0.0015 26 7 2.2891 -1.1328 -0.0010 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.9282 2.1194 -0.0038 31 1 6.1636 0.3982 1.1736 32 1 5.8974 -0.2315 -0.4613 33 1 7.4528 2.6486 1.7059 34 1 8.6092 3.3873 0.5749 35 1 6.9928 4.9743 0.5364 36 1 6.4174 3.9327 -0.7733 37 1 5.3520 4.1910 2.0519 38 1 4.4938 4.4213 0.5277 39 1 4.9953 3.3558 3.7177 40 1 3.3669 3.7711 3.1312 41 1 2.4344 1.8118 4.3306 42 1 4.0626 1.3959 4.9174 43 1 1.9469 1.1537 7.9214 44 1 4.4054 -1.3711 -0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888891053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:05 Heat of formation + Delta-G solvation = 51.387752 kcal Electronic energy + Delta-G solvation = -26228.919666 eV Core-core repulsion = 22695.673284 eV Total energy + Delta-G solvation = -3533.246382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26387 -39.60916 -36.40187 -34.36230 -33.38556 -32.72773 -31.72481 -30.42166 -29.49221 -26.61831 -26.38183 -25.94362 -23.78805 -21.99483 -21.28084 -20.81192 -20.08500 -18.18457 -17.35024 -16.60795 -16.42473 -16.13349 -15.61844 -15.47214 -15.10622 -14.74053 -14.45359 -14.21054 -14.17403 -13.60138 -13.45719 -13.23756 -12.90634 -12.70467 -12.52739 -12.34875 -12.23206 -12.14232 -11.89423 -11.75686 -11.30975 -11.14747 -10.99165 -10.92330 -10.60160 -10.37360 -9.99672 -9.85097 -9.65668 -9.28640 -9.13296 -9.08529 -8.52354 -8.35921 -7.84590 -7.69538 -5.99694 -4.04400 1.70601 2.13737 2.54607 2.77375 2.91890 3.21012 3.28940 3.36239 3.38991 3.49558 4.43237 4.46575 4.56867 4.71432 4.88857 4.97612 5.04135 5.09143 5.12519 5.18037 5.31293 5.35334 5.38886 5.41609 5.46272 5.50477 5.58237 5.68709 5.75684 5.83323 5.91365 6.04579 6.16711 6.17549 6.24904 6.80543 6.85829 6.96411 7.22477 7.70116 7.71532 7.82098 7.94781 8.03288 8.35142 8.78966 9.04693 9.59532 11.11107 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.004602 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.421352 B = 6082.458263 C = 8002.893436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.373 5.373 3 C 0.066 3.934 4 C -0.212 4.212 5 C 0.238 3.762 6 H 0.092 0.908 7 C -0.127 4.127 8 S -0.235 6.235 9 C -0.080 4.080 10 C -0.131 4.131 11 C 0.103 3.897 12 N -0.620 5.620 13 C 0.505 3.495 14 O -0.502 6.502 15 C -0.129 4.129 16 C 0.040 3.960 17 C -0.526 4.526 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.073 3.927 26 N -0.298 5.298 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.163 0.837 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.260 0.740 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.055 4.446 -19.118 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.155 5.155 3 C -0.081 4.081 4 C -0.226 4.226 5 C 0.130 3.870 6 H 0.110 0.890 7 C -0.277 4.277 8 S -0.007 6.007 9 C -0.228 4.228 10 C -0.171 4.171 11 C -0.021 4.021 12 N -0.356 5.356 13 C 0.294 3.706 14 O -0.374 6.374 15 C -0.169 4.169 16 C 0.003 3.997 17 C -0.565 4.565 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.114 4.114 26 N -0.119 5.119 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.180 0.820 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.503 2.360 -19.712 20.357 hybrid contribution -0.491 1.695 2.055 2.709 sum 4.011 4.055 -17.657 18.556 Atomic orbital electron populations 1.21782 0.74629 1.04645 1.02596 1.48226 1.06303 1.03737 1.57242 1.21933 0.90732 0.92955 1.02431 1.19667 0.93250 0.93917 1.15720 1.18762 0.89728 0.88778 0.89773 0.88972 1.23383 0.95881 1.02042 1.06438 1.85641 1.34463 1.30728 1.49850 1.22953 1.02567 0.95612 1.01636 1.21907 0.94060 0.99281 1.01840 1.22004 0.94725 0.82674 1.02655 1.47652 1.62776 1.13428 1.11731 1.21503 0.76132 0.89787 0.83137 1.90728 1.47416 1.18455 1.80783 1.21904 1.02023 0.98201 0.94765 1.18859 0.96321 0.95045 0.89479 1.21245 1.41623 0.96052 0.97561 0.92660 1.25019 0.95557 0.95047 0.98684 1.70009 1.42151 1.14629 1.25964 0.86564 0.77773 0.81188 0.82614 1.19734 1.21025 1.20983 1.23440 0.94883 0.93985 0.99069 1.77259 1.01588 1.08281 1.24760 0.91236 0.89413 0.89660 0.82020 0.89173 0.87043 0.89566 0.87782 0.89555 0.90423 0.89393 0.91846 0.90594 0.90606 0.96134 0.96034 0.93015 0.80918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.14 11.47 59.85 0.69 1.83 16 2 N -0.37 -5.67 4.01 -68.16 -0.27 -5.95 16 3 C 0.07 0.97 10.55 -17.22 -0.18 0.79 16 4 C -0.21 -3.14 3.20 -105.05 -0.34 -3.48 16 5 C 0.24 3.02 2.38 -70.51 -0.17 2.85 16 6 H 0.09 1.04 7.93 -51.93 -0.41 0.62 16 7 C -0.13 -1.60 4.83 37.66 0.18 -1.41 16 8 S -0.24 -2.62 21.48 -107.50 -2.31 -4.93 16 9 C -0.08 -0.75 6.03 35.48 0.21 -0.54 16 10 C -0.13 -1.04 5.49 -27.29 -0.15 -1.19 16 11 C 0.10 1.03 5.83 -2.54 -0.01 1.02 16 12 N -0.62 -8.32 2.37 -167.62 -0.40 -8.71 16 13 C 0.50 9.18 6.62 -10.99 -0.07 9.11 16 14 O -0.50 -11.09 12.86 5.56 0.07 -11.02 16 15 C -0.13 -2.53 4.07 -27.89 -0.11 -2.65 16 16 C 0.04 1.07 4.26 -27.89 -0.12 0.95 16 17 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 18 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.35 13.29 55.43 0.74 -26.62 16 21 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.07 1.16 10.38 -17.36 -0.18 0.98 16 26 N -0.30 -5.13 12.58 30.63 0.39 -4.75 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 31 H 0.09 1.38 7.57 -49.20 -0.37 1.01 16 32 H 0.11 1.31 6.39 -49.20 -0.31 0.99 16 33 H 0.09 0.96 7.95 -51.93 -0.41 0.54 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.60 7.78 -51.93 -0.40 0.20 16 37 H 0.09 0.93 5.76 -51.93 -0.30 0.63 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.37 7.21 -51.93 -0.37 1.00 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.02 0.60 8.10 -51.93 -0.42 0.18 16 42 H 0.02 0.63 8.10 -51.92 -0.42 0.21 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.17 2.37 6.85 -52.49 -0.36 2.01 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -35.41 361.87 -8.73 -44.14 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.71 Total: 1.11 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.66 Total: -5.19 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.45 Total: -46.02 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.31 Total: -4.93 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.41 -8.73 -44.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888891053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.531 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds