Wall clock time and date at job start Tue Mar 31 2020 13:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34950 * 126.03672 * 2 1 4 4 C 1.35318 * 107.74553 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.04169 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.72690 * 295.51099 * 5 4 3 7 7 C 1.53962 * 109.73203 * 174.87178 * 5 4 3 8 8 S 1.74752 * 112.57018 * 159.55682 * 7 5 4 9 9 C 1.83007 * 104.46150 * 61.07319 * 8 7 5 10 10 C 1.49606 * 110.33852 * 285.64295 * 9 8 7 11 11 C 1.55113 * 113.44749 * 89.18392 * 10 9 8 12 12 N 1.42848 * 109.73517 * 56.20959 * 5 4 3 13 13 C 1.34772 * 119.02618 * 35.38207 * 12 5 4 14 14 O 1.21281 * 120.00222 * 5.54901 * 13 12 5 15 15 C 1.50698 * 120.00055 * 185.55015 * 13 12 5 16 16 C 1.52996 * 109.47351 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47351 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00254 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99978 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00036 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47283 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47416 * 120.00200 * 21 19 17 24 24 H 1.48503 * 109.46919 * 240.00008 * 21 19 17 25 25 C 1.39881 * 107.91814 * 0.02562 * 4 3 2 26 26 N 1.30836 * 108.20295 * 359.97438 * 25 4 3 27 27 H 1.09004 * 109.46867 * 89.99850 * 1 2 3 28 28 H 1.08994 * 109.47818 * 210.00242 * 1 2 3 29 29 H 1.09004 * 109.47002 * 330.00334 * 1 2 3 30 30 H 1.08001 * 126.12856 * 359.75269 * 3 2 1 31 31 H 1.09004 * 108.86350 * 280.35084 * 7 5 4 32 32 H 1.09004 * 108.86677 * 38.76086 * 7 5 4 33 33 H 1.09001 * 109.32768 * 45.90876 * 9 8 7 34 34 H 1.08999 * 109.33039 * 165.55091 * 9 8 7 35 35 H 1.08996 * 108.69160 * 210.20887 * 10 9 8 36 36 H 1.08995 * 108.68439 * 328.16020 * 10 9 8 37 37 H 1.08995 * 108.18532 * 77.69994 * 11 10 9 38 38 H 1.08993 * 108.18042 * 194.53535 * 11 10 9 39 39 H 1.08995 * 109.46956 * 300.00020 * 15 13 12 40 40 H 1.09001 * 109.46617 * 60.00273 * 15 13 12 41 41 H 1.09001 * 109.47735 * 300.00688 * 16 15 13 42 42 H 1.09011 * 109.47061 * 60.00223 * 16 15 13 43 43 H 0.97001 * 120.00116 * 180.02562 * 20 19 17 44 44 H 1.08000 * 125.89784 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5452 -0.0013 6 1 4.8088 2.1186 -0.9275 7 6 6.0320 0.6757 0.1277 8 16 7.4715 1.4988 -0.4237 9 6 7.6125 2.9572 0.6728 10 6 6.5937 3.9878 0.3009 11 6 5.2397 3.8108 1.0366 12 7 4.7244 2.4342 1.1160 13 6 4.1955 1.9998 2.2770 14 8 3.8579 0.8408 2.3935 15 6 4.0236 2.9543 3.4305 16 6 3.4062 2.2131 4.6180 17 6 3.2348 3.1674 5.7717 18 1 3.5358 4.1995 5.6681 19 6 2.6939 2.7231 6.9595 20 7 2.3278 1.4662 7.0859 21 14 2.4808 3.9062 8.3893 22 1 2.9671 5.2526 7.9943 23 1 1.0440 3.9861 8.7558 24 1 3.2627 3.4202 9.5545 25 6 3.5346 -0.7322 -0.0015 26 7 2.2891 -1.1328 -0.0010 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.9282 2.1194 -0.0038 31 1 6.1636 0.3982 1.1736 32 1 5.8974 -0.2315 -0.4613 33 1 7.4528 2.6486 1.7059 34 1 8.6092 3.3873 0.5749 35 1 6.9928 4.9743 0.5364 36 1 6.4174 3.9327 -0.7733 37 1 5.3520 4.1910 2.0519 38 1 4.4938 4.4213 0.5277 39 1 4.9953 3.3558 3.7177 40 1 3.3669 3.7711 3.1312 41 1 2.4344 1.8118 4.3306 42 1 4.0626 1.3959 4.9174 43 1 1.9469 1.1537 7.9214 44 1 4.4054 -1.3711 -0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888891053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:05 Heat of formation + Delta-G solvation = 28.853727 kcal Electronic energy + Delta-G solvation = -26229.896815 eV Core-core repulsion = 22695.673284 eV Total energy + Delta-G solvation = -3534.223531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.41852 -40.87093 -37.63681 -35.74026 -35.02076 -33.72908 -33.25036 -31.96197 -30.58768 -27.87918 -27.44192 -27.37415 -25.18228 -23.40491 -22.45083 -21.94003 -21.35630 -19.45062 -18.84391 -18.00248 -17.62738 -17.30108 -16.87359 -16.70302 -16.41043 -16.14604 -15.67786 -15.37164 -15.30715 -14.90321 -14.58153 -14.30004 -14.14548 -14.01959 -13.87704 -13.53334 -13.35179 -13.32978 -13.17838 -12.98373 -12.85312 -12.68542 -12.44341 -12.12337 -11.93760 -11.76704 -11.51974 -11.49770 -11.28417 -10.79119 -10.61737 -10.59907 -10.29583 -9.63664 -9.03217 -8.59534 -8.19924 -6.34140 0.84557 1.00715 1.40239 1.41348 1.54580 1.63850 1.71302 1.79113 1.83990 2.31817 2.43061 3.13510 3.53726 3.71325 3.76907 3.87435 3.99673 4.06515 4.15573 4.25877 4.32168 4.38293 4.39687 4.46922 4.50784 4.57539 4.61284 4.61753 4.73490 4.77074 4.91221 4.97344 5.07017 5.12248 5.16134 5.26102 5.47436 5.61632 5.70640 5.81868 5.87674 6.16214 6.18594 6.46747 6.77816 6.85572 7.36419 7.43851 8.92704 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.004602 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.421352 B = 6082.458263 C = 8002.893436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.381 5.381 3 C 0.059 3.941 4 C -0.221 4.221 5 C 0.243 3.757 6 H 0.120 0.880 7 C -0.120 4.120 8 S -0.237 6.237 9 C -0.078 4.078 10 C -0.122 4.122 11 C 0.091 3.909 12 N -0.603 5.603 13 C 0.507 3.493 14 O -0.552 6.552 15 C -0.116 4.116 16 C 0.051 3.949 17 C -0.539 4.539 18 H 0.076 0.924 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.250 1.250 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.058 3.942 26 N -0.337 5.337 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.186 0.814 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.099 0.901 41 H -0.023 1.023 42 H -0.026 1.026 43 H 0.261 0.739 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 8.335 -20.227 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.163 5.163 3 C -0.088 4.088 4 C -0.235 4.235 5 C 0.135 3.865 6 H 0.137 0.863 7 C -0.270 4.270 8 S -0.009 6.009 9 C -0.226 4.226 10 C -0.162 4.162 11 C -0.031 4.031 12 N -0.337 5.337 13 C 0.297 3.703 14 O -0.428 6.428 15 C -0.156 4.156 16 C 0.013 3.987 17 C -0.577 4.577 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.173 1.173 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.128 4.128 26 N -0.159 5.159 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.203 0.797 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.145 0.855 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.117 0.883 41 H -0.005 1.005 42 H -0.007 1.007 43 H 0.070 0.930 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.397 6.298 -20.870 22.458 hybrid contribution -0.731 0.476 2.373 2.528 sum 4.666 6.774 -18.497 20.243 Atomic orbital electron populations 1.22083 0.72689 1.05035 1.04585 1.48590 1.07605 1.03401 1.56720 1.22388 0.90806 0.93834 1.01773 1.19937 0.94275 0.93701 1.15567 1.18895 0.88852 0.88638 0.90109 0.86288 1.23211 0.96853 1.02700 1.04272 1.85641 1.33465 1.31895 1.49898 1.23089 1.04546 0.95005 0.99925 1.21890 0.92171 1.00112 1.02026 1.22386 0.96797 0.80409 1.03497 1.47515 1.61120 1.14914 1.10152 1.21181 0.76335 0.88679 0.84128 1.90727 1.49997 1.20249 1.81852 1.21645 1.02879 0.98120 0.92923 1.18597 0.93524 0.94213 0.92356 1.21740 1.40962 0.97021 0.97950 0.90585 1.26120 0.95078 0.96841 1.02298 1.70196 1.43480 1.17320 1.26947 0.85315 0.77713 0.79352 0.78135 1.17310 1.20688 1.20832 1.23715 0.94910 0.95081 0.99053 1.77165 1.02490 1.09930 1.26329 0.88406 0.90105 0.88206 0.79690 0.92688 0.86835 0.91496 0.85548 0.86375 0.89366 0.89574 0.89205 0.88563 0.88255 1.00506 1.00726 0.93006 0.80228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.08 11.47 127.77 1.47 3.54 16 2 N -0.38 -11.76 4.01 -369.55 -1.48 -13.25 16 3 C 0.06 1.71 10.55 83.54 0.88 2.59 16 4 C -0.22 -6.59 3.20 -20.14 -0.06 -6.65 16 5 C 0.24 5.88 2.38 45.24 0.11 5.99 16 6 H 0.12 2.31 7.93 -2.39 -0.02 2.29 16 7 C -0.12 -3.01 4.83 72.31 0.35 -2.66 16 8 S -0.24 -4.89 21.48 -56.49 -1.21 -6.10 16 9 C -0.08 -1.24 6.03 70.90 0.43 -0.81 16 10 C -0.12 -1.41 5.49 30.23 0.17 -1.24 16 11 C 0.09 1.48 5.83 86.97 0.51 1.99 16 12 N -0.60 -15.22 2.37 -802.61 -1.90 -17.12 16 13 C 0.51 18.55 6.62 87.66 0.58 19.13 16 14 O -0.55 -25.63 12.86 -3.03 -0.04 -25.67 16 15 C -0.12 -4.49 4.07 29.85 0.12 -4.37 16 16 C 0.05 2.79 4.26 29.85 0.13 2.92 16 17 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 18 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 19 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 20 N -0.94 -59.84 13.29 21.45 0.28 -59.56 16 21 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 22 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 C 0.06 1.93 10.38 85.24 0.88 2.82 16 26 N -0.34 -12.15 12.58 -57.02 -0.72 -12.86 16 27 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.19 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.05 1.76 7.57 -4.12 -0.03 1.73 16 32 H 0.11 2.73 6.39 -4.12 -0.03 2.70 16 33 H 0.07 1.36 7.95 -2.39 -0.02 1.35 16 34 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.12 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.92 7.78 -2.39 -0.02 0.90 16 37 H 0.09 1.49 5.76 -2.39 -0.01 1.47 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 3.32 7.21 -2.39 -0.02 3.31 16 40 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 41 H -0.02 -1.48 8.10 -2.39 -0.02 -1.50 16 42 H -0.03 -1.64 8.10 -2.38 -0.02 -1.66 16 43 H 0.26 15.61 8.31 -92.71 -0.77 14.83 16 44 H 0.18 5.32 6.85 -2.91 -0.02 5.30 16 Total: -1.00 -82.20 361.87 4.17 -78.03 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.96 Total: 17.25 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 6.25 Total: -6.66 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -3.82 Total: -102.79 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.04 Total: -25.67 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -1.21 Total: -6.10 kcal Total: -82.20 4.17 -78.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888891053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.886 kcal (2) G-P(sol) polarization free energy of solvation -82.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds