Wall clock time and date at job start Tue Mar 31 2020 14:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46950 * 179.97438 * 7 6 4 9 9 O 1.20820 * 120.00403 * 359.97438 * 8 7 6 10 10 O 1.34227 * 119.99520 * 179.97438 * 8 7 6 11 11 C 1.45206 * 117.00039 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46843 * 59.99485 * 11 10 8 13 13 C 1.52995 * 109.47410 * 179.97438 * 11 10 8 14 14 C 1.53004 * 109.46736 * 300.00172 * 11 10 8 15 15 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 16 16 N 1.30448 * 108.02337 * 359.61207 * 15 3 2 17 17 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75762 * 359.97438 * 17 2 1 19 19 C 1.50696 * 109.46974 * 90.00112 * 18 17 2 20 20 H 1.08001 * 120.00163 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99873 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99984 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47063 * 90.00165 * 23 21 19 25 25 H 1.48501 * 109.47045 * 210.00089 * 23 21 19 26 26 H 1.48501 * 109.46990 * 330.00178 * 23 21 19 27 27 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 28 28 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 29 29 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 30 30 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 32 32 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 33 33 H 1.08997 * 109.47217 * 60.01040 * 12 11 10 34 34 H 1.09007 * 109.46748 * 179.97438 * 12 11 10 35 35 H 1.08998 * 109.47785 * 300.00501 * 12 11 10 36 36 H 1.08999 * 109.46813 * 59.99612 * 13 11 10 37 37 H 1.08994 * 109.47178 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47343 * 299.99938 * 13 11 10 39 39 H 1.08998 * 109.47135 * 59.99963 * 14 11 10 40 40 H 1.09004 * 109.46949 * 179.97438 * 14 11 10 41 41 H 1.09003 * 109.46640 * 299.99601 * 14 11 10 42 42 H 1.08000 * 125.99145 * 179.77305 * 15 3 2 43 43 H 1.09004 * 109.46911 * 210.00324 * 18 17 2 44 44 H 1.09002 * 109.46643 * 329.99944 * 18 17 2 45 45 H 0.96997 * 120.00146 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5717 5.8114 0.0126 9 8 4.6819 5.3347 0.0178 10 8 3.4136 7.1443 0.0134 11 6 4.6207 7.9513 0.0201 12 6 5.4515 7.6365 -1.2255 13 6 4.2430 9.4339 0.0194 14 6 5.4395 7.6336 1.2730 15 6 3.6589 0.6498 -0.0059 16 7 3.6340 -0.6545 -0.0007 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4759 -0.0006 19 6 1.6946 -2.9535 -1.4214 20 1 1.9103 -2.2855 -2.2423 21 6 1.2772 -4.2431 -1.6734 22 7 1.0141 -5.0563 -0.6739 23 14 1.0839 -4.8349 -3.4347 24 1 2.3648 -5.4227 -3.9027 25 1 0.0152 -5.8641 -3.4966 26 1 0.7182 -3.6884 -4.3048 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2972 0.0098 31 1 1.7699 5.1049 -0.8874 32 1 1.7618 5.1023 0.8925 33 1 4.8683 7.8629 -2.1180 34 1 6.3575 8.2427 -1.2206 35 1 5.7206 6.5803 -1.2255 36 1 3.6509 9.6584 0.9065 37 1 5.1491 10.0397 0.0249 38 1 3.6599 9.6599 -0.8734 39 1 5.7086 6.5774 1.2730 40 1 6.3459 8.2391 1.2778 41 1 4.8475 7.8579 2.1603 42 1 4.5448 1.2675 -0.0108 43 1 2.5848 -3.0960 0.5130 44 1 0.8915 -2.5472 0.5136 45 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889005768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:39 Heat of formation + Delta-G solvation = -61.028412 kcal Electronic energy + Delta-G solvation = -26900.019060 eV Core-core repulsion = 22919.145075 eV Total energy + Delta-G solvation = -3980.873984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28694 -40.76299 -38.89015 -37.41409 -34.63783 -34.31371 -33.84517 -32.08361 -31.19413 -28.98444 -27.81426 -27.78638 -27.02607 -26.47570 -23.53919 -22.72654 -21.70761 -20.21857 -19.82182 -19.11812 -17.74929 -17.09283 -16.81510 -16.70301 -16.40854 -15.71280 -15.18551 -15.12976 -14.70069 -14.51691 -14.19265 -14.12787 -13.99906 -13.61138 -13.06879 -12.98131 -12.90240 -12.59270 -12.49764 -12.39756 -12.36749 -12.31496 -12.09586 -11.79260 -11.78712 -11.58816 -11.47765 -11.12125 -10.88614 -10.79099 -10.38280 -10.36547 -10.20514 -9.93459 -9.51456 -9.16812 -8.70893 -8.58994 -7.93687 -6.33455 -4.41208 1.82375 2.09568 2.14736 2.78968 3.17736 3.18872 3.25141 3.30533 3.55789 3.86169 4.18304 4.24591 4.30816 4.34055 4.49194 4.98999 5.04850 5.07400 5.07756 5.13867 5.18855 5.26735 5.29344 5.30438 5.42159 5.43427 5.57429 5.60638 5.74963 5.85980 5.88291 5.93418 6.10429 6.12788 6.31906 6.45657 6.56976 6.79749 6.90865 7.15651 7.40261 7.56009 7.63701 7.77068 7.78713 8.36878 8.49891 8.64316 9.25651 10.74760 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027679 B = 0.002188 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.351120 B =12794.316450 C =12949.941866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.168 3.832 3 C -0.333 4.333 4 C 0.610 3.390 5 O -0.554 6.554 6 N -0.729 5.729 7 C 0.131 3.869 8 C 0.463 3.537 9 O -0.498 6.498 10 O -0.347 6.347 11 C 0.117 3.883 12 C -0.184 4.184 13 C -0.141 4.141 14 C -0.184 4.184 15 C 0.060 3.940 16 N -0.295 5.295 17 N -0.313 5.313 18 C 0.251 3.749 19 C -0.540 4.540 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.889 5.889 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.271 1.271 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.410 0.590 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.177 0.823 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 25.782 2.746 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.030 3.970 3 C -0.349 4.349 4 C 0.402 3.598 5 O -0.433 6.433 6 N -0.386 5.386 7 C 0.006 3.994 8 C 0.306 3.694 9 O -0.386 6.386 10 O -0.264 6.264 11 C 0.081 3.919 12 C -0.241 4.241 13 C -0.198 4.198 14 C -0.241 4.241 15 C -0.127 4.127 16 N -0.115 5.115 17 N -0.090 5.090 18 C 0.134 3.866 19 C -0.578 4.578 20 H 0.084 0.916 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.196 1.196 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.247 0.753 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.194 0.806 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.177 24.422 2.807 25.122 hybrid contribution 0.214 0.250 -0.960 1.015 sum 5.391 24.672 1.847 25.322 Atomic orbital electron populations 1.20579 0.86720 1.03825 1.03985 1.21469 0.94973 0.86488 0.94058 1.19537 0.93241 0.92020 1.30064 1.17245 0.84654 0.83739 0.74203 1.90707 1.16563 1.84362 1.51628 1.45518 1.11251 1.03467 1.78402 1.20551 0.92106 0.80659 1.06116 1.23522 0.91263 0.82372 0.72258 1.90586 1.26763 1.76224 1.45046 1.86531 1.38254 1.17948 1.83630 1.22250 0.82581 0.90429 0.96623 1.22504 1.00239 1.04888 0.96495 1.21858 1.02744 0.91675 1.03535 1.22503 1.00303 1.04883 0.96409 1.23771 0.96396 0.92615 0.99902 1.77161 0.98546 1.12251 1.23500 1.49389 1.02508 1.08316 1.48793 1.19867 0.96439 0.70869 0.99467 1.21243 1.47428 0.98130 0.90991 0.91649 1.24926 0.94452 0.96002 0.98313 1.69912 1.44513 1.07153 1.31116 0.86317 0.78084 0.78628 0.83460 1.20254 1.20793 1.19597 0.89762 0.90817 0.88792 0.75280 0.87263 0.87277 0.91868 0.90938 0.89653 0.91356 0.90255 0.91342 0.89660 0.90941 0.91876 0.80627 0.92480 0.92503 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.57 36.01 0.34 -1.31 16 2 C 0.17 3.40 7.01 -81.61 -0.57 2.83 16 3 C -0.33 -6.09 6.13 -105.07 -0.64 -6.73 16 4 C 0.61 9.92 7.81 -12.52 -0.10 9.82 16 5 O -0.55 -10.02 14.84 5.28 0.08 -9.94 16 6 N -0.73 -9.19 5.52 -62.56 -0.35 -9.54 16 7 C 0.13 1.32 6.27 -5.19 -0.03 1.29 16 8 C 0.46 4.63 7.34 36.01 0.26 4.89 16 9 O -0.50 -5.71 11.17 -18.75 -0.21 -5.92 16 10 O -0.35 -3.18 9.89 -39.25 -0.39 -3.57 16 11 C 0.12 0.89 1.13 -90.62 -0.10 0.79 16 12 C -0.18 -1.39 8.37 37.16 0.31 -1.08 16 13 C -0.14 -0.76 8.85 37.16 0.33 -0.43 16 14 C -0.18 -1.37 8.37 37.16 0.31 -1.06 16 15 C 0.06 1.07 11.50 -16.98 -0.20 0.88 16 16 N -0.29 -6.40 12.50 30.86 0.39 -6.02 16 17 N -0.31 -7.09 3.56 -57.77 -0.21 -7.30 16 18 C 0.25 6.23 5.97 -5.19 -0.03 6.20 16 19 C -0.54 -14.53 9.39 -34.44 -0.32 -14.85 16 20 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 23 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.07 1.28 7.05 -51.93 -0.37 0.91 16 29 H 0.09 1.58 6.50 -51.93 -0.34 1.24 16 30 H 0.41 4.83 6.39 -40.82 -0.26 4.57 16 31 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.82 5.89 -51.93 -0.31 0.51 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.80 5.89 -51.93 -0.31 0.50 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.18 2.36 7.50 -52.49 -0.39 1.97 16 43 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -31.02 376.70 -6.36 -37.38 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.53 Total: 4.30 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.54 Total: 2.94 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.57 Total: -46.69 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.52 Total: -19.43 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.02 -6.36 -37.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889005768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.649 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds