Wall clock time and date at job start Tue Mar 31 2020 14:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46950 * 179.97438 * 7 6 4 9 9 O 1.20820 * 120.00403 * 359.97438 * 8 7 6 10 10 O 1.34227 * 119.99520 * 179.97438 * 8 7 6 11 11 C 1.45206 * 117.00039 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46843 * 59.99485 * 11 10 8 13 13 C 1.52995 * 109.47410 * 179.97438 * 11 10 8 14 14 C 1.53004 * 109.46736 * 300.00172 * 11 10 8 15 15 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 16 16 N 1.30448 * 108.02337 * 359.61207 * 15 3 2 17 17 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75762 * 359.97438 * 17 2 1 19 19 C 1.50696 * 109.46974 * 90.00112 * 18 17 2 20 20 H 1.08001 * 120.00163 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99873 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99984 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47063 * 90.00165 * 23 21 19 25 25 H 1.48501 * 109.47045 * 210.00089 * 23 21 19 26 26 H 1.48501 * 109.46990 * 330.00178 * 23 21 19 27 27 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 28 28 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 29 29 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 30 30 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 32 32 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 33 33 H 1.08997 * 109.47217 * 60.01040 * 12 11 10 34 34 H 1.09007 * 109.46748 * 179.97438 * 12 11 10 35 35 H 1.08998 * 109.47785 * 300.00501 * 12 11 10 36 36 H 1.08999 * 109.46813 * 59.99612 * 13 11 10 37 37 H 1.08994 * 109.47178 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47343 * 299.99938 * 13 11 10 39 39 H 1.08998 * 109.47135 * 59.99963 * 14 11 10 40 40 H 1.09004 * 109.46949 * 179.97438 * 14 11 10 41 41 H 1.09003 * 109.46640 * 299.99601 * 14 11 10 42 42 H 1.08000 * 125.99145 * 179.77305 * 15 3 2 43 43 H 1.09004 * 109.46911 * 210.00324 * 18 17 2 44 44 H 1.09002 * 109.46643 * 329.99944 * 18 17 2 45 45 H 0.96997 * 120.00146 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5717 5.8114 0.0126 9 8 4.6819 5.3347 0.0178 10 8 3.4136 7.1443 0.0134 11 6 4.6207 7.9513 0.0201 12 6 5.4515 7.6365 -1.2255 13 6 4.2430 9.4339 0.0194 14 6 5.4395 7.6336 1.2730 15 6 3.6589 0.6498 -0.0059 16 7 3.6340 -0.6545 -0.0007 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4759 -0.0006 19 6 1.6946 -2.9535 -1.4214 20 1 1.9103 -2.2855 -2.2423 21 6 1.2772 -4.2431 -1.6734 22 7 1.0141 -5.0563 -0.6739 23 14 1.0839 -4.8349 -3.4347 24 1 2.3648 -5.4227 -3.9027 25 1 0.0152 -5.8641 -3.4966 26 1 0.7182 -3.6884 -4.3048 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2972 0.0098 31 1 1.7699 5.1049 -0.8874 32 1 1.7618 5.1023 0.8925 33 1 4.8683 7.8629 -2.1180 34 1 6.3575 8.2427 -1.2206 35 1 5.7206 6.5803 -1.2255 36 1 3.6509 9.6584 0.9065 37 1 5.1491 10.0397 0.0249 38 1 3.6599 9.6599 -0.8734 39 1 5.7086 6.5774 1.2730 40 1 6.3459 8.2391 1.2778 41 1 4.8475 7.8579 2.1603 42 1 4.5448 1.2675 -0.0108 43 1 2.5848 -3.0960 0.5130 44 1 0.8915 -2.5472 0.5136 45 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889005768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:38 Heat of formation + Delta-G solvation = -80.281133 kcal Electronic energy + Delta-G solvation = -26900.853920 eV Core-core repulsion = 22919.145075 eV Total energy + Delta-G solvation = -3981.708845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36408 -41.97046 -40.12776 -38.20846 -35.84663 -35.56625 -35.04463 -33.81460 -32.76973 -30.21213 -28.74413 -28.35855 -28.28043 -27.86614 -25.36632 -23.82921 -22.83510 -21.32692 -20.92838 -20.45224 -18.95929 -18.81405 -17.83621 -17.59802 -17.49011 -16.74157 -16.68728 -16.43034 -16.14407 -15.71174 -15.45442 -15.23579 -14.86969 -14.58839 -14.36923 -14.24785 -14.03578 -13.85948 -13.66830 -13.56665 -13.38179 -13.08311 -13.05233 -12.96779 -12.93879 -12.86448 -12.70200 -12.43701 -12.30918 -12.18716 -11.85473 -11.74492 -11.41558 -11.09898 -10.91444 -10.75997 -10.28709 -10.26371 -9.47738 -8.37688 -6.53848 0.65946 1.05298 1.28231 1.31334 1.37630 1.38947 1.49414 1.70001 2.32247 2.40531 2.49523 2.94560 3.46012 3.73854 3.74432 3.76115 3.79942 3.96400 4.10081 4.23071 4.28514 4.38228 4.53610 4.58878 4.62711 4.65292 4.78762 4.80767 4.81290 4.88536 4.90045 4.90143 5.06939 5.15275 5.17588 5.28140 5.29254 5.30259 5.48290 5.49619 5.64480 5.75031 6.04419 6.46695 6.54983 6.66683 6.82734 7.17056 7.24032 8.70230 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027679 B = 0.002188 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.351120 B =12794.316450 C =12949.941866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.150 3.850 3 C -0.331 4.331 4 C 0.615 3.385 5 O -0.572 6.572 6 N -0.715 5.715 7 C 0.129 3.871 8 C 0.469 3.531 9 O -0.514 6.514 10 O -0.349 6.349 11 C 0.107 3.893 12 C -0.182 4.182 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.079 3.921 16 N -0.336 5.336 17 N -0.337 5.337 18 C 0.266 3.734 19 C -0.555 4.555 20 H 0.052 0.948 21 C 0.023 3.977 22 N -0.916 5.916 23 Si 0.972 3.028 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.269 1.269 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.415 0.585 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.220 0.780 43 H 0.031 0.969 44 H 0.053 0.947 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 28.115 2.053 28.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.014 3.986 3 C -0.347 4.347 4 C 0.405 3.595 5 O -0.453 6.453 6 N -0.371 5.371 7 C 0.005 3.995 8 C 0.312 3.688 9 O -0.403 6.403 10 O -0.265 6.265 11 C 0.072 3.928 12 C -0.239 4.239 13 C -0.195 4.195 14 C -0.239 4.239 15 C -0.108 4.108 16 N -0.156 5.156 17 N -0.114 5.114 18 C 0.148 3.852 19 C -0.593 4.593 20 H 0.070 0.930 21 C -0.178 4.178 22 N -0.554 5.554 23 Si 0.795 3.205 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.194 1.194 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.253 0.747 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.236 0.764 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.508 26.801 2.123 27.444 hybrid contribution 0.187 -0.303 -0.700 0.785 sum 5.696 26.498 1.423 27.141 Atomic orbital electron populations 1.20583 0.85501 1.04253 1.04104 1.21992 0.96059 0.86537 0.94049 1.19834 0.93165 0.92865 1.28806 1.16920 0.84714 0.83460 0.74415 1.90700 1.17373 1.84501 1.52695 1.45333 1.10954 1.04068 1.76751 1.20704 0.92428 0.79062 1.07302 1.23397 0.90771 0.82736 0.71888 1.90596 1.27315 1.76563 1.45869 1.86527 1.39273 1.17441 1.83302 1.22551 0.82171 0.91429 0.96643 1.22481 1.01055 1.03774 0.96597 1.21885 1.03780 0.90033 1.03762 1.22477 1.01108 1.03784 0.96482 1.24443 0.97704 0.91649 0.97028 1.77111 0.98439 1.14309 1.25728 1.49131 1.03327 1.07844 1.51123 1.19395 0.95376 0.72261 0.98191 1.21384 1.47903 0.98464 0.91539 0.93004 1.25732 0.93860 0.95957 1.02274 1.69993 1.44835 1.07571 1.33010 0.85346 0.78295 0.78220 0.78596 1.19914 1.19579 1.19390 0.89709 0.90984 0.87643 0.74658 0.86185 0.85991 0.91720 0.89219 0.91816 0.91101 0.88352 0.91161 0.91796 0.89234 0.91630 0.76417 0.95082 0.92906 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.09 9.57 71.24 0.68 -2.41 16 2 C 0.15 6.10 7.01 42.14 0.30 6.40 16 3 C -0.33 -11.81 6.13 -20.15 -0.12 -11.93 16 4 C 0.62 18.98 7.81 86.67 0.68 19.66 16 5 O -0.57 -19.81 14.84 -4.04 -0.06 -19.87 16 6 N -0.71 -16.55 5.52 -470.10 -2.59 -19.14 16 7 C 0.13 2.35 6.27 85.63 0.54 2.88 16 8 C 0.47 8.58 7.34 71.24 0.52 9.10 16 9 O -0.51 -11.12 11.17 21.98 0.25 -10.87 16 10 O -0.35 -5.76 9.89 -51.38 -0.51 -6.27 16 11 C 0.11 1.42 1.13 -10.79 -0.01 1.41 16 12 C -0.18 -2.44 8.37 71.98 0.60 -1.83 16 13 C -0.14 -1.12 8.85 71.98 0.64 -0.48 16 14 C -0.18 -2.38 8.37 71.98 0.60 -1.78 16 15 C 0.08 2.71 11.50 85.65 0.99 3.69 16 16 N -0.34 -14.72 12.50 -56.28 -0.70 -15.42 16 17 N -0.34 -15.63 3.56 -336.70 -1.20 -16.83 16 18 C 0.27 13.77 5.97 85.63 0.51 14.28 16 19 C -0.55 -30.59 9.39 25.60 0.24 -30.35 16 20 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 21 C 0.02 1.25 5.46 84.65 0.46 1.72 16 22 N -0.92 -51.24 13.29 21.45 0.28 -50.95 16 23 Si 0.97 42.72 29.54 68.60 2.03 44.74 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.07 2.55 7.05 -2.39 -0.02 2.54 16 29 H 0.11 3.49 6.50 -2.39 -0.02 3.47 16 30 H 0.41 8.85 6.39 -92.71 -0.59 8.26 16 31 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.06 1.15 5.89 -2.39 -0.01 1.14 16 36 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 1.14 5.89 -2.39 -0.01 1.12 16 40 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.22 5.29 7.50 -2.91 -0.02 5.27 16 43 H 0.03 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.05 2.72 7.02 -2.39 -0.02 2.70 16 45 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -67.18 376.70 4.53 -62.65 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.42 Total: 21.61 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 6.62 Total: 10.35 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -4.21 Total: -102.34 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.32 Total: -37.02 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -67.18 4.53 -62.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889005768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.631 kcal (2) G-P(sol) polarization free energy of solvation -67.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds