Wall clock time and date at job start Tue Mar 31 2020 14:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99637 * 2 1 4 4 O 1.20828 * 120.00020 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99813 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46779 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47112 * 60.00402 * 6 5 3 8 8 C 1.52991 * 109.47452 * 299.99995 * 6 5 3 9 9 N 1.46506 * 109.47041 * 179.97438 * 6 5 3 10 10 C 1.34773 * 119.99968 * 179.97438 * 9 6 5 11 11 O 1.21602 * 119.99987 * 359.73127 * 10 9 6 12 12 C 1.47436 * 119.99867 * 180.02562 * 10 9 6 13 13 C 1.41286 * 126.41299 * 359.41281 * 12 10 9 14 14 N 1.30448 * 108.02337 * 179.87788 * 13 12 10 15 15 N 1.39938 * 108.89467 * 0.38911 * 14 13 12 16 16 C 1.46503 * 125.75356 * 179.75148 * 15 14 13 17 17 C 1.50696 * 109.46974 * 269.99715 * 16 15 14 18 18 H 1.08001 * 120.00163 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99873 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99784 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99944 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47036 * 89.99828 * 21 19 17 23 23 H 1.48501 * 109.47338 * 209.99683 * 21 19 17 24 24 H 1.48499 * 109.47125 * 329.99973 * 21 19 17 25 25 C 1.34259 * 108.48882 * 359.74809 * 15 14 13 26 26 C 1.50699 * 126.28729 * 179.97438 * 25 15 14 27 27 H 1.08996 * 109.47280 * 299.99748 * 1 2 3 28 28 H 1.09001 * 109.47466 * 60.00201 * 1 2 3 29 29 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47048 * 60.00383 * 5 3 2 31 31 H 1.08993 * 109.47202 * 299.99849 * 5 3 2 32 32 H 1.09001 * 109.47281 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.46837 * 299.99685 * 7 6 5 34 34 H 1.08998 * 109.46909 * 59.99241 * 7 6 5 35 35 H 1.09002 * 109.47337 * 299.99567 * 8 6 5 36 36 H 1.09002 * 109.47025 * 59.99992 * 8 6 5 37 37 H 1.09001 * 109.47264 * 179.97438 * 8 6 5 38 38 H 0.97004 * 120.00014 * 0.02562 * 9 6 5 39 39 H 1.08000 * 125.99145 * 0.03887 * 13 12 10 40 40 H 1.09004 * 109.46911 * 29.99927 * 16 15 14 41 41 H 1.09002 * 109.46643 * 149.99548 * 16 15 14 42 42 H 0.97003 * 119.99565 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.47568 * 269.99949 * 26 25 15 44 44 H 1.09002 * 109.47528 * 29.99975 * 26 25 15 45 45 H 1.08998 * 109.46953 * 150.00240 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 3.9999 2.7423 -0.0011 7 6 3.4534 3.4361 1.2483 8 6 3.4524 3.4355 -1.2502 9 7 5.4630 2.8191 -0.0011 10 6 6.0747 4.0199 -0.0020 11 8 5.4124 5.0397 -0.0078 12 6 7.5471 4.0972 -0.0025 13 6 8.4442 3.0057 0.0095 14 7 9.6588 3.4815 0.0020 15 7 9.5978 4.8796 -0.0060 16 6 10.7483 5.7865 -0.0107 17 6 11.1421 6.1057 1.4085 18 1 10.5903 5.6762 2.2316 19 6 12.2068 6.9459 1.6561 20 7 12.5502 7.2248 2.8947 21 14 13.1607 7.6893 0.2324 22 1 12.5470 8.9860 -0.1511 23 1 14.5704 7.9111 0.6433 24 1 13.1230 6.7617 -0.9266 25 6 8.3071 5.2494 -0.0087 26 6 7.7844 6.6628 -0.0165 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9556 0.7811 -0.8908 31 1 3.9563 0.7808 0.8891 32 1 3.7627 4.4813 1.2481 33 1 2.3648 3.3790 1.2487 34 1 3.8434 2.9421 2.1381 35 1 3.8419 2.9413 -2.1403 36 1 2.3639 3.3784 -1.2498 37 1 3.7610 4.4809 -1.2503 38 1 5.9914 2.0056 -0.0011 39 1 8.1721 1.9606 0.0202 40 1 11.5848 5.3096 -0.5215 41 1 10.4828 6.7074 -0.5300 42 1 13.2990 7.8162 3.0688 43 1 7.6577 7.0091 1.0093 44 1 8.4934 7.3097 -0.5333 45 1 6.8240 6.6921 -0.5310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889144112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:24 Heat of formation + Delta-G solvation = -47.562114 kcal Electronic energy + Delta-G solvation = -27484.772355 eV Core-core repulsion = 23504.482313 eV Total energy + Delta-G solvation = -3980.290042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20037 -40.80867 -39.32528 -37.24054 -35.78120 -33.94204 -32.42924 -31.85361 -31.14584 -29.53879 -27.76894 -27.32219 -27.22838 -26.71092 -23.41047 -22.63476 -21.69558 -20.36303 -19.34071 -18.93899 -18.00621 -17.29628 -17.21618 -16.91512 -16.60812 -15.55977 -15.10284 -15.02733 -14.66516 -14.39725 -14.21364 -14.01772 -13.77157 -13.60470 -13.40293 -13.23196 -12.69615 -12.56451 -12.45809 -12.27343 -12.14127 -12.07740 -11.91962 -11.74648 -11.59913 -11.28266 -11.19488 -11.12837 -10.93301 -10.84165 -10.56778 -10.39421 -10.18656 -9.79619 -9.21798 -8.97298 -8.85248 -8.65135 -7.96190 -6.33181 -4.37813 1.84028 2.13968 2.22738 2.73266 3.06393 3.12457 3.17944 3.23062 3.54140 3.89008 4.15402 4.19067 4.57941 4.60655 4.72029 4.80812 4.91202 4.95344 5.06108 5.15157 5.16844 5.22855 5.35158 5.50097 5.64838 5.75642 5.80566 5.91369 5.91670 5.95598 6.03864 6.11547 6.26612 6.42879 6.45649 6.49547 6.50026 6.60135 6.69965 7.01983 7.18182 7.41269 7.56317 7.75440 8.19673 8.27936 8.62312 8.70092 9.20708 10.79016 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.035437 B = 0.002358 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.950791 B =11871.963115 C =12048.064393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.491 6.491 5 C -0.121 4.121 6 C 0.194 3.806 7 C -0.176 4.176 8 C -0.175 4.175 9 N -0.730 5.730 10 C 0.610 3.390 11 O -0.546 6.546 12 C -0.329 4.329 13 C 0.060 3.940 14 N -0.293 5.293 15 N -0.314 5.314 16 C 0.225 3.775 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.081 3.919 20 N -0.883 5.883 21 Si 0.873 3.127 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 C 0.169 3.831 26 C -0.094 4.094 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.396 0.604 39 H 0.177 0.823 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.270 0.730 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.365 -13.419 -7.899 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.310 3.690 4 O -0.378 6.378 5 C -0.159 4.159 6 C 0.108 3.892 7 C -0.234 4.234 8 C -0.233 4.233 9 N -0.382 5.382 10 C 0.400 3.600 11 O -0.425 6.425 12 C -0.345 4.345 13 C -0.127 4.127 14 N -0.113 5.113 15 N -0.090 5.090 16 C 0.106 3.894 17 C -0.583 4.583 18 H 0.100 0.900 19 C -0.124 4.124 20 N -0.519 5.519 21 Si 0.698 3.302 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.188 1.188 25 C 0.032 3.968 26 C -0.152 4.152 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.230 0.770 39 H 0.194 0.806 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.512 -12.486 -7.783 24.438 hybrid contribution 0.026 0.020 -0.439 0.441 sum -19.486 -12.466 -8.222 24.550 Atomic orbital electron populations 1.23280 0.76095 1.03741 1.02714 1.86504 1.23620 1.33415 1.84205 1.23354 0.91800 0.81345 0.72505 1.90615 1.67195 1.35675 1.44330 1.21628 0.88555 0.99195 1.06501 1.19874 0.80044 0.91620 0.97682 1.22473 1.02521 1.03260 0.95113 1.22467 1.02548 1.03207 0.95054 1.45793 1.05729 1.08663 1.78042 1.17167 0.85981 0.82592 0.74235 1.90644 1.66181 1.34594 1.51083 1.19682 0.92969 0.92678 1.29135 1.23738 0.90097 0.98865 1.00006 1.77143 1.21519 0.89009 1.23598 1.48894 1.05755 1.04526 1.49867 1.20149 0.82149 0.86917 1.00198 1.21084 1.16711 1.30448 0.90032 0.90039 1.24796 0.96263 0.95459 0.95887 1.69866 1.27853 1.35402 1.18781 0.86903 0.80245 0.80295 0.82720 1.19505 1.20369 1.18792 1.21470 0.84584 0.96775 0.93974 1.20594 1.01840 0.88548 1.04218 0.91757 0.91776 0.88092 0.86976 0.86915 0.89797 0.90017 0.93263 0.93375 0.90014 0.89813 0.76970 0.80597 0.92748 0.93440 0.91978 0.89495 0.91203 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.85 10.57 -39.27 -0.41 -3.26 16 3 C 0.47 4.19 7.37 36.00 0.27 4.45 16 4 O -0.49 -5.57 11.10 -18.75 -0.21 -5.78 16 5 C -0.12 -0.89 4.99 -27.88 -0.14 -1.03 16 6 C 0.19 2.07 0.80 -131.82 -0.11 1.97 16 7 C -0.18 -2.17 8.10 37.16 0.30 -1.87 16 8 C -0.18 -2.08 8.10 37.15 0.30 -1.78 16 9 N -0.73 -8.32 5.10 -48.67 -0.25 -8.57 16 10 C 0.61 9.52 7.23 -12.52 -0.09 9.43 16 11 O -0.55 -9.70 11.04 5.28 0.06 -9.64 16 12 C -0.33 -5.74 6.13 -105.07 -0.64 -6.38 16 13 C 0.06 0.99 11.50 -16.98 -0.20 0.80 16 14 N -0.29 -6.07 12.50 30.86 0.39 -5.69 16 15 N -0.31 -6.84 3.56 -57.77 -0.21 -7.05 16 16 C 0.22 5.20 5.03 -5.19 -0.03 5.17 16 17 C -0.54 -14.86 9.94 -34.44 -0.34 -15.21 16 18 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 20 N -0.88 -25.79 13.96 55.43 0.77 -25.02 16 21 Si 0.87 19.72 27.47 -169.99 -4.67 15.05 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 25 C 0.17 3.31 7.01 -81.61 -0.57 2.74 16 26 C -0.09 -1.64 9.57 36.01 0.34 -1.30 16 27 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 28 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.27 6.17 -51.93 -0.32 0.95 16 33 H 0.08 1.01 5.52 -51.93 -0.29 0.73 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.98 5.52 -51.93 -0.29 0.70 16 37 H 0.08 1.21 6.15 -51.93 -0.32 0.89 16 38 H 0.40 3.39 7.43 -40.82 -0.30 3.09 16 39 H 0.18 2.00 7.50 -52.49 -0.39 1.60 16 40 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 41 H 0.05 1.01 6.44 -51.93 -0.33 0.68 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.07 1.15 7.05 -51.93 -0.37 0.78 16 45 H 0.10 1.58 6.50 -51.93 -0.34 1.25 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -33.40 364.84 -5.26 -38.66 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.29 Total: 5.43 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 0.07 Total: 0.37 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.71 Total: -46.32 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.56 Total: -18.68 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.40 -5.26 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889144112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.904 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds