Wall clock time and date at job start Tue Mar 31 2020 14:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99637 * 2 1 4 4 O 1.20828 * 120.00020 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99813 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46779 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47112 * 60.00402 * 6 5 3 8 8 C 1.52991 * 109.47452 * 299.99995 * 6 5 3 9 9 N 1.46506 * 109.47041 * 179.97438 * 6 5 3 10 10 C 1.34773 * 119.99968 * 179.97438 * 9 6 5 11 11 O 1.21602 * 119.99987 * 359.73127 * 10 9 6 12 12 C 1.47436 * 119.99867 * 180.02562 * 10 9 6 13 13 C 1.41286 * 126.41299 * 359.41281 * 12 10 9 14 14 N 1.30448 * 108.02337 * 179.87788 * 13 12 10 15 15 N 1.39938 * 108.89467 * 0.38911 * 14 13 12 16 16 C 1.46503 * 125.75356 * 179.75148 * 15 14 13 17 17 C 1.50696 * 109.46974 * 269.99715 * 16 15 14 18 18 H 1.08001 * 120.00163 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99873 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99784 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99944 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47036 * 89.99828 * 21 19 17 23 23 H 1.48501 * 109.47338 * 209.99683 * 21 19 17 24 24 H 1.48499 * 109.47125 * 329.99973 * 21 19 17 25 25 C 1.34259 * 108.48882 * 359.74809 * 15 14 13 26 26 C 1.50699 * 126.28729 * 179.97438 * 25 15 14 27 27 H 1.08996 * 109.47280 * 299.99748 * 1 2 3 28 28 H 1.09001 * 109.47466 * 60.00201 * 1 2 3 29 29 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47048 * 60.00383 * 5 3 2 31 31 H 1.08993 * 109.47202 * 299.99849 * 5 3 2 32 32 H 1.09001 * 109.47281 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.46837 * 299.99685 * 7 6 5 34 34 H 1.08998 * 109.46909 * 59.99241 * 7 6 5 35 35 H 1.09002 * 109.47337 * 299.99567 * 8 6 5 36 36 H 1.09002 * 109.47025 * 59.99992 * 8 6 5 37 37 H 1.09001 * 109.47264 * 179.97438 * 8 6 5 38 38 H 0.97004 * 120.00014 * 0.02562 * 9 6 5 39 39 H 1.08000 * 125.99145 * 0.03887 * 13 12 10 40 40 H 1.09004 * 109.46911 * 29.99927 * 16 15 14 41 41 H 1.09002 * 109.46643 * 149.99548 * 16 15 14 42 42 H 0.97003 * 119.99565 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.47568 * 269.99949 * 26 25 15 44 44 H 1.09002 * 109.47528 * 29.99975 * 26 25 15 45 45 H 1.08998 * 109.46953 * 150.00240 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 3.9999 2.7423 -0.0011 7 6 3.4534 3.4361 1.2483 8 6 3.4524 3.4355 -1.2502 9 7 5.4630 2.8191 -0.0011 10 6 6.0747 4.0199 -0.0020 11 8 5.4124 5.0397 -0.0078 12 6 7.5471 4.0972 -0.0025 13 6 8.4442 3.0057 0.0095 14 7 9.6588 3.4815 0.0020 15 7 9.5978 4.8796 -0.0060 16 6 10.7483 5.7865 -0.0107 17 6 11.1421 6.1057 1.4085 18 1 10.5903 5.6762 2.2316 19 6 12.2068 6.9459 1.6561 20 7 12.5502 7.2248 2.8947 21 14 13.1607 7.6893 0.2324 22 1 12.5470 8.9860 -0.1511 23 1 14.5704 7.9111 0.6433 24 1 13.1230 6.7617 -0.9266 25 6 8.3071 5.2494 -0.0087 26 6 7.7844 6.6628 -0.0165 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9556 0.7811 -0.8908 31 1 3.9563 0.7808 0.8891 32 1 3.7627 4.4813 1.2481 33 1 2.3648 3.3790 1.2487 34 1 3.8434 2.9421 2.1381 35 1 3.8419 2.9413 -2.1403 36 1 2.3639 3.3784 -1.2498 37 1 3.7610 4.4809 -1.2503 38 1 5.9914 2.0056 -0.0011 39 1 8.1721 1.9606 0.0202 40 1 11.5848 5.3096 -0.5215 41 1 10.4828 6.7074 -0.5300 42 1 13.2990 7.8162 3.0688 43 1 7.6577 7.0091 1.0093 44 1 8.4934 7.3097 -0.5333 45 1 6.8240 6.6921 -0.5310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889144112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:23 Heat of formation + Delta-G solvation = -71.119118 kcal Electronic energy + Delta-G solvation = -27485.793863 eV Core-core repulsion = 23504.482313 eV Total energy + Delta-G solvation = -3981.311550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.35948 -41.79961 -40.41042 -38.03430 -36.72421 -35.76425 -34.10085 -33.10040 -32.60392 -30.28663 -29.46695 -28.20520 -28.14506 -27.85615 -25.09056 -23.93931 -22.65465 -21.46984 -20.52821 -20.29546 -19.28088 -18.67266 -18.55227 -17.53425 -17.29056 -16.92209 -16.52947 -16.25536 -16.03724 -15.56624 -15.42755 -15.09997 -14.94463 -14.59768 -14.49750 -14.33771 -14.16797 -14.11710 -13.76128 -13.68688 -13.14534 -13.02492 -12.99412 -12.92100 -12.71306 -12.56135 -12.53313 -12.19477 -12.12108 -12.08488 -11.84970 -11.66026 -11.60817 -11.31587 -10.91657 -10.46929 -10.23724 -10.05522 -9.40916 -8.42903 -6.54693 0.69546 1.19617 1.33879 1.34737 1.37010 1.45201 1.53629 1.73831 2.24662 2.52283 2.60306 2.89517 3.43762 3.73791 3.78493 3.92006 3.93149 4.14417 4.19852 4.23663 4.35219 4.38453 4.40546 4.55172 4.58435 4.62440 4.70389 4.72978 4.76948 4.87379 4.89163 4.96697 5.00482 5.07547 5.17997 5.18400 5.32406 5.45054 5.55779 5.65716 5.72652 5.84843 6.21959 6.48204 6.70848 6.78269 6.85293 7.09083 7.46281 8.73500 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.035437 B = 0.002358 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.950791 B =11871.963115 C =12048.064393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.523 6.523 5 C -0.114 4.114 6 C 0.194 3.806 7 C -0.172 4.172 8 C -0.170 4.170 9 N -0.708 5.708 10 C 0.609 3.391 11 O -0.571 6.571 12 C -0.328 4.328 13 C 0.082 3.918 14 N -0.335 5.335 15 N -0.339 5.339 16 C 0.234 3.766 17 C -0.552 4.552 18 H 0.026 0.974 19 C 0.022 3.978 20 N -0.935 5.935 21 Si 0.949 3.051 22 H -0.253 1.253 23 H -0.277 1.277 24 H -0.242 1.242 25 C 0.145 3.855 26 C -0.088 4.088 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.415 0.585 39 H 0.231 0.769 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.274 0.726 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.919 -15.583 -9.955 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.312 3.688 4 O -0.412 6.412 5 C -0.151 4.151 6 C 0.108 3.892 7 C -0.230 4.230 8 C -0.228 4.228 9 N -0.361 5.361 10 C 0.398 3.602 11 O -0.452 6.452 12 C -0.343 4.343 13 C -0.105 4.105 14 N -0.154 5.154 15 N -0.116 5.116 16 C 0.114 3.886 17 C -0.590 4.590 18 H 0.044 0.956 19 C -0.178 4.178 20 N -0.573 5.573 21 Si 0.770 3.230 22 H -0.178 1.178 23 H -0.203 1.203 24 H -0.165 1.165 25 C 0.010 3.990 26 C -0.146 4.146 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.252 0.748 39 H 0.247 0.753 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.099 -14.714 -9.846 26.784 hybrid contribution -0.008 0.573 0.298 0.646 sum -20.107 -14.140 -9.547 26.370 Atomic orbital electron populations 1.23521 0.74899 1.05563 1.02481 1.86495 1.24820 1.32658 1.83784 1.23631 0.92386 0.81202 0.71602 1.90615 1.67964 1.36708 1.45923 1.21601 0.87651 0.96574 1.09281 1.19868 0.79130 0.93972 0.96199 1.22402 1.02539 1.01561 0.96494 1.22381 1.02469 1.01612 0.96302 1.45550 1.06273 1.08028 1.76246 1.17027 0.85196 0.83519 0.74454 1.90654 1.66383 1.35941 1.52180 1.19995 0.94074 0.92373 1.27853 1.24567 0.88376 1.00896 0.96689 1.77088 1.23873 0.88663 1.25769 1.48739 1.05815 1.04969 1.52096 1.19872 0.83190 0.88234 0.97330 1.21182 1.16496 1.30321 0.90983 0.95591 1.25830 0.97222 0.95705 0.99079 1.70028 1.28909 1.36674 1.21680 0.85699 0.78131 0.80095 0.79065 1.17758 1.20261 1.16513 1.21960 0.84414 0.98300 0.94353 1.20573 1.02389 0.88025 1.03648 0.92121 0.91970 0.85279 0.83941 0.84301 0.93060 0.90198 0.92433 0.91939 0.90308 0.92889 0.74797 0.75297 0.92549 0.91326 0.91681 0.90689 0.90350 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.36 -4.72 10.57 -51.47 -0.54 -5.26 16 3 C 0.47 7.24 7.37 71.23 0.53 7.76 16 4 O -0.52 -11.27 11.10 21.96 0.24 -11.03 16 5 C -0.11 -1.24 4.99 29.85 0.15 -1.09 16 6 C 0.19 3.72 0.80 3.60 0.00 3.73 16 7 C -0.17 -4.13 8.10 71.98 0.58 -3.54 16 8 C -0.17 -3.83 8.10 71.98 0.58 -3.24 16 9 N -0.71 -14.13 5.10 -426.14 -2.17 -16.30 16 10 C 0.61 18.18 7.23 86.67 0.63 18.81 16 11 O -0.57 -20.32 11.04 -4.04 -0.04 -20.37 16 12 C -0.33 -11.01 6.13 -20.15 -0.12 -11.14 16 13 C 0.08 2.50 11.50 85.65 0.99 3.49 16 14 N -0.33 -13.58 12.50 -56.28 -0.70 -14.29 16 15 N -0.34 -14.82 3.56 -336.70 -1.20 -16.02 16 16 C 0.23 10.81 5.03 85.63 0.43 11.24 16 17 C -0.55 -31.13 9.94 25.60 0.25 -30.88 16 18 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 19 C 0.02 1.21 5.47 84.65 0.46 1.67 16 20 N -0.93 -56.46 13.96 21.45 0.30 -56.16 16 21 Si 0.95 40.35 27.47 68.60 1.88 42.24 16 22 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.24 -9.39 6.54 99.48 0.65 -8.74 16 25 C 0.14 5.70 7.01 42.14 0.30 6.00 16 26 C -0.09 -3.13 9.57 71.24 0.68 -2.45 16 27 H 0.06 0.59 8.13 -2.39 -0.02 0.58 16 28 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 29 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 1.57 6.17 -2.39 -0.01 1.56 16 33 H 0.08 1.96 5.52 -2.39 -0.01 1.94 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.85 5.52 -2.39 -0.01 1.83 16 37 H 0.05 1.54 6.15 -2.39 -0.01 1.52 16 38 H 0.41 5.22 7.43 -92.71 -0.69 4.53 16 39 H 0.23 4.11 7.50 -2.91 -0.02 4.08 16 40 H 0.06 2.57 7.20 -2.38 -0.02 2.55 16 41 H 0.07 2.85 6.44 -2.39 -0.02 2.84 16 42 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 43 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.08 2.57 7.05 -2.39 -0.02 2.55 16 45 H 0.10 3.47 6.50 -2.39 -0.02 3.45 16 Total: -1.00 -77.81 364.84 4.70 -73.11 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.28 Total: 22.27 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 6.65 Total: 1.80 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -3.78 Total: -102.76 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.34 Total: -36.65 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.88 Total: 42.24 kcal Total: -77.81 4.70 -73.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889144112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.988 kcal (2) G-P(sol) polarization free energy of solvation -77.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds